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Estimation of Non-null SNP Effect Size Distributions Enables the Detection of Enriched Genes Underlying Complex Traits
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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New candidate loci identified by array‐CGH in a cohort of 100 children presenting with syndromic obesity
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Gene‐based genetic association test with adaptive optimal weights
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Powerful SNP-Set Analysis for Case-Control Genome-wide Association Studies
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A Versatile Gene-Based Test for Genome-wide Association Studies
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Estimating Missing Heritability for Disease from Genome-wide Association Studies
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Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test
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Mutations in EZH2 Cause Weaver Syndrome
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Five Years of GWAS Discovery
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Optimal Unified Approach for Rare-Variant Association Testing with Application to Small-Sample Case-Control Whole-Exome Sequencing Studies
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Sequence Kernel Association Tests for the Combined Effect of Rare and Common Variants
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Fine Mapping and Identification of BMI Loci in African Americans
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Rare-Variant Association Analysis: Study Designs and Statistical Tests
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Platelet-Related Variants Identified by Exomechip Meta-analysis in 157,293 Individuals
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Contrasting the Genetic Architecture of 30 Complex Traits from Summary Association Data
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Colocalization of GWAS and eQTL Signals Detects Target Genes
inferredcites →https://doi.org/10.1016/j.cell.2016.10.042openalex-snapshot
The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease
inferredcites →https://doi.org/10.1016/j.cell.2017.05.038openalex-snapshot
An Expanded View of Complex Traits: From Polygenic to Omnigenic
inferredcites →https://doi.org/10.1016/j.cell.2018.05.051openalex-snapshot
Common Disease Is More Complex Than Implied by the Core Gene Omnigenic Model
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Computing the distribution of quadratic forms: Further comparisons between the Liu–Tang–Zhang approximation and exact methods
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Finding the missing heritability of complex diseases
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Obesity-associated variants within FTO form long-range functional connections with IRX3
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Genetic studies of body mass index yield new insights for obesity biology
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Integrative analysis of 111 reference human epigenomes
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High-throughput discovery of novel developmental phenotypes
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Rare and low-frequency coding variants alter human adult height
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Genetic effects on gene expression across human tissues
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Environment dominates over host genetics in shaping human gut microbiota
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Mutations in TMPRSS6 cause iron-refractory iron deficiency anemia (IRIDA)
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Advantages and pitfalls in the application of mixed-model association methods
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Defining the role of common variation in the genomic and biological architecture of adult human height
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LD Score regression distinguishes confounding from polygenicity in genome-wide association studies
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Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index
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Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps
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Reevaluation of SNP heritability in complex human traits
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Genotype–covariate interaction effects and the heritability of adult body mass index
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Common variants in TMPRSS6 are associated with iron status and erythrocyte volume
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Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels
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Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium
inferredcites →https://doi.org/10.1038/ng.467openalex-snapshot
A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium
inferredcites →https://doi.org/10.1038/ng.608openalex-snapshot
Common SNPs explain a large proportion of the heritability for human height
inferredcites →https://doi.org/10.1038/ng1109-1161openalex-snapshot
Genes determining blood cell traits
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Accurate liability estimation improves power in ascertained case-control studies
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Heritability in the genomics era — concepts and misconceptions
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Non-parametric genetic prediction of complex traits with latent Dirichlet process regression models
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Integrative analysis of omics summary data reveals putative mechanisms underlying complex traits
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Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes
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Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes
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Improved polygenic prediction by Bayesian multiple regression on summary statistics
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The UK Biobank resource with deep phenotyping and genomic data
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Estimation of complex effect-size distributions using summary-level statistics from genome-wide association studies across 32 complex traits
inferredcites →https://doi.org/10.1038/s41588-018-0231-8openalex-snapshot
Functional architecture of low-frequency variants highlights strength of negative selection across coding and non-coding annotations
inferredcites →https://doi.org/10.1038/s41588-019-0379-xopenalex-snapshot
Clinical use of current polygenic risk scores may exacerbate health disparities
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FTO Obesity Variant Circuitry and Adipocyte Browning in Humans
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Common Genetic Variation and Human Traits
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Canonical Wnt signaling negatively regulates platelet function
inferredcites →https://doi.org/10.1073/pnas.1322563111openalex-snapshot
Searching for missing heritability: Designing rare variant association studies
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Measuring missing heritability: Inferring the contribution of common variants
inferredcites →https://doi.org/10.1073/pnas.1510497113openalex-snapshot
Linear mixed model for heritability estimation that explicitly addresses environmental variation
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DYRK1A regulates Hap1–Dcaf7/WDR68 binding with implication for delayed growth in Down syndrome
inferredcites →https://doi.org/10.1073/pnas.96.17.9648openalex-snapshot
Wiskott-Aldrich syndrome protein regulates podosomes in primary human macrophages
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Computing the Distribution of Quadratic Forms in Normal Variables
inferredcites →https://doi.org/10.1093/biomet/asq017openalex-snapshot
The horseshoe estimator for sparse signals
inferredcites →https://doi.org/10.1093/biostatistics/kxw041openalex-snapshot
False discovery rates: a new deal
inferredcites →https://doi.org/10.1093/database/baq020openalex-snapshot
GeneCards Version 3: the human gene integrator
inferredcites →https://doi.org/10.1093/hmg/dds534openalex-snapshot
GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children
inferredcites →https://doi.org/10.1093/humupd/dmh012openalex-snapshot
Precocious puberty and statural growth
inferredcites →https://doi.org/10.1093/nar/gki476openalex-snapshot
PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes
inferredcites →https://doi.org/10.1093/nar/gkl1003openalex-snapshot
The mouse Gene Expression Database (GXD): 2007 update
inferredcites →https://doi.org/10.1093/nar/gkq1224openalex-snapshot
TEFM (c17orf42) is necessary for transcription of human mtDNA
inferredcites →https://doi.org/10.1093/nar/gku987openalex-snapshot
Mouse Tumor Biology (MTB): a database of mouse models for human cancer
inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
inferredcites →https://doi.org/10.1093/nar/gkx1006openalex-snapshot
Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse
inferredcites →https://doi.org/10.1111/j.1467-9868.2005.00503.xopenalex-snapshot
Regularization and Variable Selection Via the Elastic Net
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Maximum Likelihood from Incomplete Data Via the EM Algorithm
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Regression Shrinkage and Selection Via the Lasso
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The Collinearity Problem in Linear Regression. The Partial Least Squares (PLS) Approach to Generalized Inverses
inferredcites →https://doi.org/10.1159/000353591openalex-snapshot
TFAP2B-Dietary Protein and Glycemic Index Interactions and Weight Maintenance after Weight Loss in the DiOGenes Trial
inferredcites →https://doi.org/10.1182/blood-2012-03-416875openalex-snapshot
Canonical Wnt signaling in megakaryocytes regulates proplatelet formation
inferredcites →https://doi.org/10.1182/blood-2016-03-378588openalex-snapshot
Inherited platelet disorders: toward DNA-based diagnosis
inferredcites →https://doi.org/10.1186/1471-2105-14-128openalex-snapshot
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
inferredcites →https://doi.org/10.1214/009053604000000238openalex-snapshot
Optimal predictive model selection
inferredcites →https://doi.org/10.1214/17-aoas1046openalex-snapshot
Bayesian large-scale multiple regression with summary statistics from genome-wide association studies
inferredcites →https://doi.org/10.1214/17-aoas1052openalex-snapshot
A unified framework for variance component estimation with summary statistics in genome-wide association studies
inferredcites →https://doi.org/10.1214/aos/1176344136openalex-snapshot
Estimating the Dimension of a Model
inferredcites →https://doi.org/10.1371/journal.pcbi.1004219openalex-snapshot
MAGMA: Generalized Gene-Set Analysis of GWAS Data
inferredcites →https://doi.org/10.1371/journal.pcbi.1004714openalex-snapshot
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics
inferredcites →https://doi.org/10.1371/journal.pgen.1002491openalex-snapshot
A Meta-Analysis and Genome-Wide Association Study of Platelet Count and Mean Platelet Volume in African Americans
inferredcites →https://doi.org/10.1371/journal.pgen.1002637openalex-snapshot
Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits
inferredcites →https://doi.org/10.1371/journal.pgen.1003264openalex-snapshot
Polygenic Modeling with Bayesian Sparse Linear Mixed Models
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Integrated Enrichment Analysis of Variants and Pathways in Genome-Wide Association Studies Indicates Central Role for IL-2 Signaling Genes in Type 1 Diabetes, and Cytokine Signaling Genes in Crohn's Disease
inferredcites →https://doi.org/10.1371/journal.pgen.1005804openalex-snapshot
Pedigree- and SNP-Associated Genetics and Recent Environment are the Major Contributors to Anthropometric and Cardiometabolic Trait Variation
inferredcites →https://doi.org/10.1371/journal.pgen.1006711openalex-snapshot
Phenome-wide heritability analysis of the UK Biobank
inferredcites →https://doi.org/10.1371/journal.pgen.1006869openalex-snapshot
Detecting epistasis with the marginal epistasis test in genetic mapping studies of quantitative traits
inferredcites →https://doi.org/10.1371/journal.pgen.1006925openalex-snapshot
Rare coding variants pinpoint genes that control human hematological traits
inferredcites →https://doi.org/10.1371/journal.pgen.1007222openalex-snapshot
A high throughput, functional screen of human Body Mass Index GWAS loci using tissue-specific RNAi Drosophila melanogaster crosses
inferredcites →https://doi.org/10.1371/journal.pmed.1002383openalex-snapshot
Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis
inferredcites →https://doi.org/10.1534/genetics.114.167908openalex-snapshot
Identifying Causal Variants at Loci with Multiple Signals of Association
inferredcites →https://doi.org/10.1534/genetics.116.188391openalex-snapshot
Gene and Network Analysis of Common Variants Reveals Novel Associations in Multiple Complex Diseases
inferredcites →https://doi.org/10.1534/genetics.117.300257openalex-snapshot
COMBAT: A Combined Association Test for Genes Using Summary Statistics
inferredcites →https://doi.org/10.1534/genetics.117.300287openalex-snapshot
A Powerful Variant-Set Association Test Based on Chi-Square Distribution
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Accurate Genomic Prediction of Human Height
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mixtools : An R Package for Analyzing Finite Mixture Models
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Ridge Regression: Biased Estimation for Nonorthogonal Problems
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Estimating Effect Sizes and Expected Replication Probabilities from GWAS Summary Statistics
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.ajhg.2022.03.005openalex-snapshot
Enrichment analyses identify shared associations for 25 quantitative traits in over 600,000 individuals from seven diverse ancestries
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