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Evolutionary contingency’s impact on laboratory evolution of Escherichia coli under fluctuating environments

https://doi.org/10.1101/598995
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Adaptation to fluctuations in temperature by nine species of bacteria
inferredcites →https://doi.org/10.1007/978-1-4939-0554-6openalex-snapshot
Engineering and Analyzing Multicellular Systems
inferredcites →https://doi.org/10.1007/bf02270698openalex-snapshot
Evolution in heterogeneous environments: Effects of migration on habitat specialization
inferredcites →https://doi.org/10.1007/s10539-007-9076-8openalex-snapshot
Enabling conditions for ‘open-ended evolution’
inferredcites →https://doi.org/10.1007/s10955-012-0563-1openalex-snapshot
Evolution of Robustness and Plasticity under Environmental Fluctuation: Formulation in Terms of Phenotypic Variances
inferredcites →https://doi.org/10.1007/s11467-009-0067-xopenalex-snapshot
Spin qubits for quantum simulations
inferredcites →https://doi.org/10.1016/0092-8674(83)90505-6openalex-snapshot
Mutations in the Lon gene of E. coli K12 phenotypically suppress a mutation in the sigma subunit of RNA polymerase
inferredcites →https://doi.org/10.1016/j.celrep.2015.03.018openalex-snapshot
Individual and Collective Contributions of Chaperoning and Degradation to Protein Homeostasis in E. coli
inferredcites →https://doi.org/10.1016/j.csda.2004.06.015openalex-snapshot
How many principal components? stopping rules for determining the number of non-trivial axes revisited
inferredcites →https://doi.org/10.1016/j.molcel.2012.11.004openalex-snapshot
Protein Quality Control Acts on Folding Intermediates to Shape the Effects of Mutations on Organismal Fitness
inferredcites →https://doi.org/10.1016/j.resmic.2004.10.003openalex-snapshot
SulA-dependent hypersensitivity to high pressure and hyperfilamentation after high-pressure treatment of Escherichia coli lon mutants
inferredcites →https://doi.org/10.1016/j.resmic.2009.08.021openalex-snapshot
Regulation and quality control by Lon-dependent proteolysis
inferredcites →https://doi.org/10.1016/s0378-1097(01)00557-2openalex-snapshot
Protein aggregation in Escherichia coli: role of proteases
inferredcites →https://doi.org/10.1038/35037572openalex-snapshot
The population genetics of ecological specialization in evolving Escherichia coli populations
inferredcites →https://doi.org/10.1038/nature08480openalex-snapshot
Genome evolution and adaptation in a long-term experiment with Escherichia coli
inferredcites →https://doi.org/10.1038/nature08504openalex-snapshot
Experimental evolution of bet hedging
inferredcites →https://doi.org/10.1038/nature18959openalex-snapshot
Tempo and mode of genome evolution in a 50,000-generation experiment
inferredcites →https://doi.org/10.1038/nrg1088openalex-snapshot
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
inferredcites →https://doi.org/10.1073/pnas.0602917103openalex-snapshot
Tests of parallel molecular evolution in a long-term experiment with Escherichia coli
inferredcites →https://doi.org/10.1073/pnas.1406886111openalex-snapshot
Different tradeoffs result from alternate genetic adaptations to a common environment
inferredcites →https://doi.org/10.1073/pnas.1408589111openalex-snapshot
Evolutionary tipping points in the capacity to adapt to environmental change
inferredcites →https://doi.org/10.1073/pnas.98.2.525openalex-snapshot
Genetic architecture of thermal adaptation in Escherichia coli
inferredcites →https://doi.org/10.1074/jbc.m110.103374openalex-snapshot
Evolution of Escherichia coli for Growth at High Temperatures
inferredcites →https://doi.org/10.1086/285289openalex-snapshot
Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations
inferredcites →https://doi.org/10.1093/bioinformatics/btw313openalex-snapshot
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
inferredcites →https://doi.org/10.1093/gbe/evw054openalex-snapshot
How Archiving by Freezing Affects the Genome-Scale Diversity ofEscherichia coliPopulations
inferredcites →https://doi.org/10.1093/molbev/msu209openalex-snapshot
Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations
inferredcites →https://doi.org/10.1093/molbev/msx216openalex-snapshot
Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression
inferredcites →https://doi.org/10.1093/ve/vez028openalex-snapshot
DISSEQT—DIStribution-based modeling of SEQuence space Time dynamics†
inferredcites →https://doi.org/10.1101/gad.1428206openalex-snapshot
Regulon and promoter analysis of the E. coli heat-shock factor, σ 32 , reveals a multifaceted cellular response to heat stress
inferredcites →https://doi.org/10.1111/evo.12148openalex-snapshot
FLUCTUATING TEMPERATURE LEADS TO EVOLUTION OF THERMAL GENERALISM AND PREADAPTATION TO NOVEL ENVIRONMENTS
inferredcites →https://doi.org/10.1111/evo.12710openalex-snapshot
Constraints on adaptation ofEscherichia colito mixed-resource environments increase over time
inferredcites →https://doi.org/10.1111/gtc.12298openalex-snapshot
Functional specialization in regulation and quality control in thermal adaptive evolution
inferredcites →https://doi.org/10.1111/j.1420-9101.2011.02378.xopenalex-snapshot
Natural selection. I. Variable environments and uncertain returns on investment*
inferredcites →https://doi.org/10.1111/j.1558-5646.1992.tb01981.xopenalex-snapshot
EVOLUTIONARY ADAPTATION TO TEMPERATURE. I. FITNESS RESPONSES OF ESCHERICHIA COLI TO CHANGES IN ITS THERMAL ENVIRONMENT
inferredcites →https://doi.org/10.1126/science.1152763openalex-snapshot
Termination Factor Rho and Its Cofactors NusA and NusG Silence Foreign DNA in E. coli
inferredcites →https://doi.org/10.1126/science.1212986openalex-snapshot
The Molecular Diversity of Adaptive Convergence
inferredcites →https://doi.org/10.1128/jb.169.4.1772-1776.1987openalex-snapshot
Structural inhibition and reactivation of Escherichia coli septation by elements of the SOS and TER pathways
inferredcites →https://doi.org/10.1128/jb.183.9.2834-2841.2001openalex-snapshot
Mechanisms Causing Rapid and Parallel Losses of Ribose Catabolism in Evolving Populations ofEscherichia coliB
inferredcites →https://doi.org/10.1146/annurev.es.19.110188.001231openalex-snapshot
THE EVOLUTION OF ECOLOGICAL SPECIALIZATION
inferredcites →https://doi.org/10.1186/1475-2859-12-64openalex-snapshot
Adaptive laboratory evolution – principles and applications for biotechnology
inferredcites →https://doi.org/10.1186/s12862-015-0457-3openalex-snapshot
The phenotypic signature of adaptation to thermal stress in Escherichia coli
inferredcites →https://doi.org/10.1371/journal.pbio.1001490openalex-snapshot
Parallel Evolutionary Dynamics of Adaptive Diversification in Escherichia coli
inferredcites →https://doi.org/10.1371/journal.pgen.1001164openalex-snapshot
Transition from Positive to Neutral in Mutation Fixation along with Continuing Rising Fitness in Thermal Adaptive Evolution
inferredcites →https://doi.org/10.1371/journal.pone.0026172openalex-snapshot
Cumulative Number of Cell Divisions as a Meaningful Timescale for Adaptive Laboratory Evolution of Escherichia coli
inferredcites →https://doi.org/10.1515/9780691209418openalex-snapshot
Evolution in Changing Environments
inferredcites →https://doi.org/10.1534/genetics.167.1.523openalex-snapshot
Stochastic Gene Expression in Fluctuating Environments
inferredcites →https://doi.org/10.2307/2409801openalex-snapshot
Evolutionary Adaptation to Temperature. I. Fitness Responses of Escherichia coli to Changes in its Thermal Environment
inferredcites →https://doi.org/10.3389/fphy.2017.00016openalex-snapshot
Environmental Fluctuations and Their Consequences for the Evolution of Phenotypic Diversity
inferredcites →https://doi.org/10.3389/fpsyg.2016.01139openalex-snapshot
Systematicity and a Categorical Theory of Cognitive Architecture: Universal Construction in Context
inferredcites →https://doi.org/10.5840/tpm20021941openalex-snapshot
Beyond nature versus nurture
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