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Fine-scale ecological and transcriptomic data reveal niche differentiation of an allopolyploid from diploid parents in Cardamine

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Can niche plasticity promote biodiversity–productivity relationships through increased complementarity?

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What we still don't know about polyploidy

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Biodiversity effects on ecosystem functioning in a 15-year grassland experiment: Patterns, mechanisms, and open questions

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Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress

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Genomics meets remote sensing in global change studies: monitoring and predicting phenology, evolution and biodiversity

inferredcites →https://doi.org/10.1016/j.cub.2007.08.030openalex-snapshot

Expression Partitioning between Genes Duplicated by Polyploidy under Abiotic Stress and during Organ Development

inferredcites →https://doi.org/10.1016/j.cub.2018.03.054openalex-snapshot

Plant–Pathogen Warfare under Changing Climate Conditions

inferredcites →https://doi.org/10.1016/j.tree.2004.09.003openalex-snapshot

Plant coexistence and the niche

inferredcites →https://doi.org/10.1016/j.tree.2011.01.009openalex-snapshot

Why intraspecific trait variation matters in community ecology

inferredcites →https://doi.org/10.1016/j.ygeno.2008.08.011openalex-snapshot

Genome-wide identification of osmotic stress response gene in Arabidopsis thaliana

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1038/1611015a0openalex-snapshot

Chromosome Number of Cardamine pratensis

inferredcites →https://doi.org/10.1038/161277a0openalex-snapshot

Chromosome Number of Cardamine pratensis

inferredcites →https://doi.org/10.1038/hdy.2012.79openalex-snapshot

Polyploidy and its effect on evolutionary success: old questions revisited with new tools

inferredcites →https://doi.org/10.1038/hdy.2012.94openalex-snapshot

Homoeolog expression bias and expression level dominance in allopolyploid cotton

inferredcites →https://doi.org/10.1038/nplants.2016.167openalex-snapshot

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity

inferredcites →https://doi.org/10.1038/s41467-018-06108-1openalex-snapshot

Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica

inferredcites →https://doi.org/10.1038/s41477-018-0253-3openalex-snapshot

Molecular basis of flowering under natural long-day conditions in Arabidopsis

inferredcites →https://doi.org/10.1046/j.1442-1984.2003.00086.xopenalex-snapshot

Ecological distribution and phenology of an invasive species, Cardamine hirsuta L., and its native counterpart, Cardamine flexuosa With., in central Japan

inferredcites →https://doi.org/10.1073/pnas.0914293107openalex-snapshot

Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment

inferredcites →https://doi.org/10.1073/pnas.1412277112openalex-snapshot

Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris

inferredcites →https://doi.org/10.1078/1439-1791-00165openalex-snapshot

Cardamine amara L. (Brassicaceae) in dynamic habitats: Genetic composition and diversity of seed bank and established populations

inferredcites →https://doi.org/10.1093/aob/mci016openalex-snapshot

Evolution of Genome Size in Brassicaceae

inferredcites →https://doi.org/10.1093/aob/mcr180openalex-snapshot

Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology

inferredcites →https://doi.org/10.1093/aob/mcr277openalex-snapshot

The more the better? The role of polyploidy in facilitating plant invasions

inferredcites →https://doi.org/10.1093/aob/mcv006openalex-snapshot

Female sterility associated with increased clonal propagation suggests a unique combination of androdioecy and asexual reproduction in populations of Cardamine amara (Brassicaceae)

inferredcites →https://doi.org/10.1093/bib/bby121openalex-snapshot

Homeolog expression quantification methods for allopolyploids

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot

STAR: ultrafast universal RNA-seq aligner

inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/molbev/msw141openalex-snapshot

Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica

inferredcites →https://doi.org/10.1093/mp/ssu013openalex-snapshot

Short-Term and Continuing Stresses Differentially Interplay with Multiple Hormones to Regulate Plant Survival and Growth

inferredcites →https://doi.org/10.1093/nar/gkt1376openalex-snapshot

Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis

inferredcites →https://doi.org/10.1098/rstb.2013.0346openalex-snapshot

Altitudinal gradients, plant hybrid zones and evolutionary novelty

inferredcites →https://doi.org/10.1098/rstb.2013.0351openalex-snapshot

Polyploidy and novelty: Gottlieb's legacy

inferredcites →https://doi.org/10.1098/rstb.2013.0354openalex-snapshot

The legacy of diploid progenitors in allopolyploid gene expression patterns

inferredcites →https://doi.org/10.1104/pp.105.070110openalex-snapshot

Enhanced Tolerance to Environmental Stress in Transgenic Plants Expressing the Transcriptional Coactivator Multiprotein Bridging Factor 1c

inferredcites →https://doi.org/10.1105/tpc.105.035881openalex-snapshot

Functional Analysis of anArabidopsisTranscription Factor, DREB2A, Involved in Drought-Responsive Gene Expression

inferredcites →https://doi.org/10.1105/tpc.113.114405openalex-snapshot

The More the Merrier: Recent Hybridization and Polyploidy in Cardamine

inferredcites →https://doi.org/10.1105/tpc.113.115352openalex-snapshot

Expression Quantitative Trait Locus Mapping across Water Availability Environments Reveals Contrasting Associations with Genomic Features in Arabidopsis

inferredcites →https://doi.org/10.1111/ele.12259openalex-snapshot

Evidence for shared broad‐scale climatic niches of diploid and polyploid plants

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04313.xopenalex-snapshot

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

inferredcites →https://doi.org/10.1111/j.1461-0248.2005.00792.xopenalex-snapshot

Predicting species distribution: offering more than simple habitat models

inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03650.xopenalex-snapshot

Differential contributions to the transcriptome of duplicated genes in response to abiotic stresses in natural and synthetic polyploids

inferredcites →https://doi.org/10.1111/jbi.12085openalex-snapshot

Divergent and narrower climatic niches characterize polyploid species of European primroses inPrimulasect.Aleuritia

inferredcites →https://doi.org/10.1111/mec.13055openalex-snapshot

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

inferredcites →https://doi.org/10.1111/mec.13738openalex-snapshot

Plant adaptive radiation mediated by polyploid plasticity in transcriptomes

inferredcites →https://doi.org/10.1111/nph.12371openalex-snapshot

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures

inferredcites →https://doi.org/10.1111/nph.12567openalex-snapshot

The widespread crucifer species C ardamine flexuosa is an allotetraploid with a conserved subgenomic structure

inferredcites →https://doi.org/10.1111/nph.14069openalex-snapshot

Patterns of abiotic niche shifts in allopolyploids relative to their progenitors

inferredcites →https://doi.org/10.1146/annurev.arplant.043008.092039openalex-snapshot

The Role of Hybridization in Plant Speciation

inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103835openalex-snapshot

Genetic and Epigenetic Mechanisms for Gene Expression and Phenotypic Variation in Plant Polyploids

inferredcites →https://doi.org/10.1146/annurev.ecolsys.29.1.467openalex-snapshot

PATHWAYS, MECHANISMS, AND RATES OF POLYPLOID FORMATION IN FLOWERING PLANTS

inferredcites →https://doi.org/10.1146/annurev.genet.34.1.401openalex-snapshot

POLYPLOID INCIDENCE AND EVOLUTION

inferredcites →https://doi.org/10.1146/annurev.phyto.121107.104959openalex-snapshot

Role of Stomata in Plant Innate Immunity and Foliar Bacterial Diseases

inferredcites →https://doi.org/10.1186/s12859-017-1911-6openalex-snapshot

Reference-guided de novo assembly approach improves genome reconstruction for related species

inferredcites →https://doi.org/10.1186/s12864-017-4067-xopenalex-snapshot

Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica

inferredcites →https://doi.org/10.1186/s12870-015-0511-8openalex-snapshot

Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)

inferredcites →https://doi.org/10.1371/journal.pgen.1002662openalex-snapshot

Genome-Wide Patterns of Arabidopsis Gene Expression in Nature

inferredcites →https://doi.org/10.1534/genetics.109.102608openalex-snapshot

Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium)

inferredcites →https://doi.org/10.3417/2007047openalex-snapshot

Biogeography and Phylogeny of Cardamine (Brassicaceae)1

inferredcites →https://doi.org/10.3732/ajb.1300417openalex-snapshot

Climate niche modeling in the perennial Glycine (Leguminosae) allopolyploid complex

inferredcites →https://doi.org/10.3732/ajb.1400178openalex-snapshot

The polyploidy revolution then…and now: Stebbins revisited

inferredcites →https://doi.org/10.3732/ajb.1500501openalex-snapshot

Polyploidy: Pitfalls and paths to a paradigm

inferredcites →https://doi.org/10.3732/ajb.93.8.1206openalex-snapshot

Worldwide phylogeny and biogeography of Cardamine flexuosa (Brassicaceae) and its relatives

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10265-019-01164-0openalex-snapshot

Trait-dependent resemblance of the flowering phenology and floral morphology of the allopolyploid Cardamine flexuosa to those of the parental diploids in natural habitats

inferred← citeshttps://doi.org/10.3389/fgene.2020.565854openalex-snapshot

Experimental and Field Data Support Range Expansion in an Allopolyploid Arabidopsis Owing to Parental Legacy of Heavy Metal Hyperaccumulation

inferred← citeshttps://doi.org/10.3389/fgene.2020.567262openalex-snapshot

A Recently Formed Triploid Cardamine insueta Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents

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