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Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Spatial and Temporal Dynamics of Phytoplankton Communities in a Freshwater Tidal Estuary (Schelde, Belgium)
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ggplot2: Elegant Graphics for Data Analysis
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Desulfuromonas acetexigens sp. nov., a dissimilatory sulfur-reducing eubacterium from anoxic freshwater sediments
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The effects of light quality on the growth of phototrophic bacteria in lakes
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Desulfuromonas acetoxidans gen. nov. and sp. nov., a new anaerobic, sulfur-reducing, acetate-oxidizing bacterium
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Particle trapping in stratified estuaries: Application to observations
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Chromatium glycolicum sp. nov., a moderately halophilic purple sulfur bacterium that uses glycolate as substrate
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Vertical physico-chemical gradients with distinct microbial communities in the hypersaline and heliothermal Lake Ursu (Sovata, Romania)
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Spatial, geomorphological, and seasonal variability of CDOM in estuaries of the Florida Coastal Everglades
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The Effects of Oxygen Transition on Community Respiration and Potential Chemoautotrophic Production in a Seasonally Stratified Anoxic Estuary
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Effects of tides on mixing and suspended sediment transport in macrotidal estuaries
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The effect of the spring-neap tidal cycle on the vertical salinity structure of the James, York and Rappahannock Rivers, Virginia, U.S.A.
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Competition between purple and brown phototrophic bacteria in stratified lakes: sulfide, acetate, and light as limiting factors
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Structure of a microbiol mat at Great Sippewissett Marsh, Cape Cod, Massachusetts
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Pigments, light penetration, and photosynthetic activity in the multi-layered microbial mats of Great Sippewissett Salt Marsh, Massachusetts
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Characterization of Pigments of Prokaryotes and Their Use in Taxonomy and Classification
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Seasonal and spatial variability of free-living bacterial community composition along an estuarine gradient (Ria de Aveiro, Portugal)
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Interaction between Sox proteins of two physiologically distinct bacteria and a new protein involved in thiosulfate oxidation
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Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries
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Distributions and seasonal variability of dissolved organic nitrogen in two estuaries in SW England
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Influence of water column dynamics on sulfide oxidation and other major biogeochemical processes in the chemocline of Mariager Fjord (Denmark)
inferredcites →https://doi.org/10.1016/s0304-4203(99)00014-6openalex-snapshot
The subterranean estuary: a reaction zone of ground water and sea water
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Ferrozine---a new spectrophotometric reagent for iron
inferredcites →https://doi.org/10.1023/a:1006161302838openalex-snapshot
Light intensity effects on pigment composition and organisation in the green sulfur bacterium Chlorobium tepidum
inferredcites →https://doi.org/10.1023/a:1020550215012openalex-snapshot
The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments
inferredcites →https://doi.org/10.1029/92rg02584openalex-snapshot
Coastal metabolism and the oceanic organic carbon balance
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A simple model of estuarine subtidal fluctuations forced by local and remote wind stress
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Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing
inferredcites →https://doi.org/10.1038/ismej.2016.93openalex-snapshot
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
inferredcites →https://doi.org/10.1038/nbt.3704openalex-snapshot
Measurement of bacterial replication rates in microbial communities
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.146openalex-snapshot
Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales
inferredcites →https://doi.org/10.1038/nrmicro3569openalex-snapshot
An updated evolutionary classification of CRISPR–Cas systems
inferredcites →https://doi.org/10.1038/s41467-017-00912-xopenalex-snapshot
Oxic-anoxic regime shifts mediated by feedbacks between biogeochemical processes and microbial community dynamics
inferredcites →https://doi.org/10.1038/s41564-018-0312-6openalex-snapshot
Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing
inferredcites →https://doi.org/10.1038/s41598-018-27973-2openalex-snapshot
Stratification Modelling of Key Bacterial Taxa Driven by Metabolic Dynamics in Meromictic Lakes
inferredcites →https://doi.org/10.1038/srep36550openalex-snapshot
Bacterial community structure and function shift along a successional series of tidal flats in the Yellow River Delta
inferredcites →https://doi.org/10.1086/591680openalex-snapshot
The Timescale of Phenotypic Plasticity and Its Impact on Competition in Fluctuating Environments
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btr026openalex-snapshot
Quality control and preprocessing of metagenomic datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btx364openalex-snapshot
UpSetR: an R package for the visualization of intersecting sets and their properties
inferredcites →https://doi.org/10.1093/femsle/fnw103openalex-snapshot
Microbial impact on polysulfide dynamics in the environment
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkw1017openalex-snapshot
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
inferredcites →https://doi.org/10.1093/nar/gky425openalex-snapshot
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
inferredcites →https://doi.org/10.1098/rstb.1982.0057openalex-snapshot
Responses of microorganisms to physical and chemical gradients
inferredcites →https://doi.org/10.1099/00207713-47-3-754openalex-snapshot
Desulfuromonas thiophila sp. nov., a New Obligately Sulfur-Reducing Bacterium from Anoxic Freshwater Sediment
inferredcites →https://doi.org/10.1099/ijs.0.65647-0openalex-snapshot
Allochromatium phaeobacterium sp. nov.
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1462-2920.14467openalex-snapshot
Comparative genomics and physiology of the genus Methanohalophilus , a prevalent methanogen in hydraulically fractured shale
inferredcites →https://doi.org/10.1111/1574-6941.12408openalex-snapshot
Molecular ecology of microbial mats
inferredcites →https://doi.org/10.1111/1758-2229.12538openalex-snapshot
The life sulfuric: microbial ecology of sulfur cycling in marine sediments
inferredcites →https://doi.org/10.1111/gbi.12092openalex-snapshot
Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake
inferredcites →https://doi.org/10.1111/j.1365-2672.1977.tb00770.xopenalex-snapshot
The Isolation and Some Characteristics of Photosynthetic Bacteria ( Chromatiaceae and Chlorobiaceae ) from Antarctic Marine Sediments
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00883.xopenalex-snapshot
Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River
inferredcites →https://doi.org/10.1111/j.1462-2920.2009.02058.xopenalex-snapshot
Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia
inferredcites →https://doi.org/10.1111/j.1574-6941.2003.tb01040.xopenalex-snapshot
Using ecological diversity measures with bacterial communities
inferredcites →https://doi.org/10.1111/j.1574-6941.2009.00737.xopenalex-snapshot
Dominance of a clonal green sulfur bacterial population in a stratified lake
inferredcites →https://doi.org/10.1111/j.2153-3490.1976.tb00695.xopenalex-snapshot
Mass and salt transfers and halocline depths in an estuary
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.02062-15openalex-snapshot
Light-Dependent Sulfide Oxidation in the Anoxic Zone of the Chesapeake Bay Can Be Explained by Small Populations of Phototrophic Bacteria
inferredcites →https://doi.org/10.1128/aem.02435-14openalex-snapshot
Community Shift from Phototrophic to Chemotrophic Sulfide Oxidation following Anoxic Holomixis in a Stratified Seawater Lake
inferredcites →https://doi.org/10.1128/aem.06268-11openalex-snapshot
Abundance and Genetic Diversity of Aerobic Anoxygenic Phototrophic Bacteria of Coastal Regions of the Pacific Ocean
inferredcites →https://doi.org/10.1128/aem.45.4.1261-1270.1983openalex-snapshot
Colorless Sulfur Bacteria, Beggiatoa spp. and Thiovulum spp., in O 2 and H 2 S Microgradients
inferredcites →https://doi.org/10.1128/aem.50.2.373-382.1985openalex-snapshot
Oxygen Responses and Mat Formation by Beggiatoa spp
inferredcites →https://doi.org/10.1128/aem.71.12.8049-8060.2005openalex-snapshot
Physiology and Phylogeny of Green Sulfur Bacteria Forming a Monospecific Phototrophic Assemblage at a Depth of 100 Meters in the Black Sea
inferredcites →https://doi.org/10.1128/aem.71.7.3544-3550.2005openalex-snapshot
Long-Term Population Dynamics of Phototrophic Sulfur Bacteria in the Chemocline of Lake Cadagno, Switzerland
inferredcites →https://doi.org/10.1128/jb.00027-08openalex-snapshot
Ultrastructural Characterization of the Prokaryotic Symbiosis in “ Chlorochromatium aggregatum ”
inferredcites →https://doi.org/10.1128/jb.00634-08openalex-snapshot
SoxAX Binding Protein, a Novel Component of the Thiosulfate-Oxidizing Multienzyme System in the Green Sulfur Bacterium Chlorobium tepidum
inferredcites →https://doi.org/10.1128/jb.172.11.6333-6338.1990openalex-snapshot
Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product
inferredcites →https://doi.org/10.1128/mspheredirect.00069-18openalex-snapshot
A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection
inferredcites →https://doi.org/10.1139/m86-169openalex-snapshot
Competitive development of Thiocapsa roseopersicina and Chlorobium phaebacteroides in Lake Kinneret
inferredcites →https://doi.org/10.1186/1471-2105-8-1openalex-snapshot
Comparing sequences without using alignments: application to HIV/SIV subtyping
inferredcites →https://doi.org/10.1186/1471-2105-8-172openalex-snapshot
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
inferredcites →https://doi.org/10.1186/1471-2105-9-386openalex-snapshot
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
inferredcites →https://doi.org/10.1186/s12859-017-1512-4openalex-snapshot
Not all predicted CRISPR–Cas systems are equal: isolated cas genes and classes of CRISPR like elements
inferredcites →https://doi.org/10.1371/journal.pone.0038558openalex-snapshot
Salt Marsh as a Coastal Filter for the Oceans: Changes in Function with Experimental Increases in Nitrogen Loading and Sea-Level Rise
inferredcites →https://doi.org/10.1371/journal.pone.0101443openalex-snapshot
Chemoautotrophic Carbon Fixation Rates and Active Bacterial Communities in Intertidal Marine Sediments
inferredcites →https://doi.org/10.1371/journal.pone.0178755openalex-snapshot
Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.15786/wyoscholar/9645openalex-snapshot
Value of Wetlands in Protecting Southeast Louisiana from Hurricane Storm Surges, The
inferredcites →https://doi.org/10.1890/10-1510.1openalex-snapshot
The value of estuarine and coastal ecosystem services
inferredcites →https://doi.org/10.2134/jeq2001.3041474xopenalex-snapshot
Phosphorus Sorption Characteristics of Estuarine Sediments under Different Redox Conditions
inferredcites →https://doi.org/10.2307/1351581openalex-snapshot
Tidal Straining, Density Currents, and Stirring in the Control of Estuarine Stratification
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3354/meps071163openalex-snapshot
Decomposition and significance of sea-grass leaf litter (Cymodocea nodosa) for the microbial food web in coastal waters (Gulf of Trieste, Northern Adriatic Sea)
inferredcites →https://doi.org/10.3389/fmicb.2012.00293openalex-snapshot
Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat
inferredcites →https://doi.org/10.3402/tellusa.v28i5.11315openalex-snapshot
Mass and salt transfers and halocline depths in an estuary
inferredcites →https://doi.org/10.4081/jlimnol.2004.161openalex-snapshot
Phototropic sulfur and sulfate-reducing bacteria in the chemocline of meromictic Lake Cadagno, Switzerland
inferredcites →https://doi.org/10.4319/lo.1969.14.3.0454openalex-snapshot
SPECTROPHOTOMETRIC DETERMINATION OF HYDROGEN SULFIDE IN NATURAL WATERS1
inferredcites →https://doi.org/10.4319/lo.1988.33.4_part_2.0725openalex-snapshot
Comparison of microbial dynamics in marine and freshwater sediments: Contrasts in anaerobic carbon catabolism
inferredcites →https://doi.org/10.4319/lo.2000.45.6.1254openalex-snapshot
Carbon loss and optical property changes during long‐term photochemical and biological degradation of estuarine dissolved organic matter
inferredcites →https://doi.org/10.6084/m9.figshare.833944openalex-snapshot
16S amplicon fusion primers and protocol for Illumina platform sequencing
inferredcites →https://doi.org/10.7717/peerj.1165openalex-snapshot
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
inferredcites →https://doi.org/10.7717/peerj.1319openalex-snapshot
Anvi’o: an advanced analysis and visualization platform for ‘omics data
inferredcites →https://doi.org/10.7717/peerj.425openalex-snapshot
FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
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