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Research applications of primary biodiversity databases in the digital age

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Museum specimen data reveal emergence of a plant disease may be linked to increases in the insect vector population
inferredcites →https://doi.org/10.1007/bf00045216openalex-snapshot
The phenology of Guyanese timber species: a compilation of a century of observations
inferredcites →https://doi.org/10.1007/s10531-012-0383-2openalex-snapshot
Assessing declines of North American bumble bees (Bombus spp.) using museum specimens
inferredcites →https://doi.org/10.1007/s10531-014-0707-5openalex-snapshot
Changes in occurrence, richness, and biological traits of dragonflies and damselflies (Odonata) in California and Nevada over the past century
inferredcites →https://doi.org/10.1007/s10531-014-0718-2openalex-snapshot
Data exchange gaps in knowledge of biodiversity: implications for the management and conservation of Biosphere Reserves
inferredcites →https://doi.org/10.1007/s10531-017-1399-4openalex-snapshot
Detecting long-term occupancy changes in Californian odonates from natural history and citizen science records
inferredcites →https://doi.org/10.1007/s10750-012-1368-6openalex-snapshot
Biodiversity in Mediterranean-climate streams of California
inferredcites →https://doi.org/10.1007/s10822-014-9768-5openalex-snapshot
Encouraging data citation and discovery with the Data Citation Index
inferredcites →https://doi.org/10.1016/j.biocon.2013.06.034openalex-snapshot
Knowledge behind conservation status decisions: Data basis for “Data Deficient” Brazilian plant species
inferredcites →https://doi.org/10.1016/j.biocon.2013.07.042openalex-snapshot
Strategies for the sustainability of online open-access biodiversity databases
inferredcites →https://doi.org/10.1016/j.biocon.2013.10.018openalex-snapshot
Best practice for biodiversity data management and publication
inferredcites →https://doi.org/10.1016/j.biocon.2013.11.003openalex-snapshot
The eBird enterprise: An integrated approach to development and application of citizen science
inferredcites →https://doi.org/10.1016/j.cub.2013.11.014openalex-snapshot
The Availability of Research Data Declines Rapidly with Article Age
inferredcites →https://doi.org/10.1016/j.cub.2015.10.002openalex-snapshot
Widespread mistaken identity in tropical plant collections
inferredcites →https://doi.org/10.1016/j.gecco.2017.11.002openalex-snapshot
Predicting species distribution combining multi-scale drivers
inferredcites →https://doi.org/10.1016/j.procs.2012.04.177openalex-snapshot
Kurator: A Kepler Package for Data Curation Workflows
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New developments in museum-based informatics and applications in biodiversity analysis
inferredcites →https://doi.org/10.1016/j.tree.2010.11.006openalex-snapshot
Data archiving in ecology and evolution: best practices
inferredcites →https://doi.org/10.1016/j.tree.2013.05.002openalex-snapshot
Biodiversity data should be published, cited, and peer reviewed
inferredcites →https://doi.org/10.1016/j.tree.2015.08.008openalex-snapshot
Emerging Technologies to Conserve Biodiversity
inferredcites →https://doi.org/10.1016/s0169-5347(97)01177-4openalex-snapshot
The role of natural history collections in documenting species declines
inferredcites →https://doi.org/10.1016/s1286-4579(02)00010-2openalex-snapshot
Tracking historic migrations of the Irish potato famine pathogen, Phytophthora infestans
inferredcites →https://doi.org/10.1038/d41586-018-05256-0openalex-snapshot
Before reproducibility must come preproducibility
inferredcites →https://doi.org/10.1038/ncomms9221openalex-snapshot
Global priorities for an effective information basis of biodiversity distributions
inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot
The FAIR Guiding Principles for scientific data management and stewardship
inferredcites →https://doi.org/10.1038/sdata.2018.259openalex-snapshot
A data citation roadmap for scientific publishers
inferredcites →https://doi.org/10.1046/j.1523-1739.2001.015003648.xopenalex-snapshot
Evaluation of Museum Collection Data for Use in Biodiversity Assessment
inferredcites →https://doi.org/10.1073/pnas.1423041112openalex-snapshot
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
inferredcites →https://doi.org/10.1073/pnas.1502350112openalex-snapshot
Mass extinction in poorly known taxa
inferredcites →https://doi.org/10.1073/pnas.1508681112openalex-snapshot
Current extinction rates of reptiles and amphibians
inferredcites →https://doi.org/10.1080/13658810412331280211openalex-snapshot
The point-radius method for georeferencing locality descriptions and calculating associated uncertainty
inferredcites →https://doi.org/10.1093/ae/56.4.206openalex-snapshot
Specimen Databases: A Case Study in Entomology using Web-based Software
inferredcites →https://doi.org/10.1093/bioinformatics/btn659openalex-snapshot
Biodiversity informatics: automated approaches for documenting global biodiversity patterns and processes
inferredcites →https://doi.org/10.1093/bioinformatics/btw057openalex-snapshot
The geospatial data quality REST API for primary biodiversity data
inferredcites →https://doi.org/10.1093/biosci/biv104openalex-snapshot
Digitization of Biodiversity Collections Reveals Biggest Data on Biodiversity
inferredcites →https://doi.org/10.1093/database/bay033openalex-snapshot
The tragedy of the biodiversity data commons: a data impediment creeping nigher?
inferredcites →https://doi.org/10.1093/sysbio/syr080openalex-snapshot
Predicting Total Global Species Richness Using Rates of Species Description and Estimates of Taxonomic Effort
inferredcites →https://doi.org/10.1109/escience.2013.48openalex-snapshot
A Computational- and Storage-Cloud for Integration of Biodiversity Collections
inferredcites →https://doi.org/10.1109/escience.2017.88openalex-snapshot
Designing a High-Throughput Pipeline for Digitizing Pinned Insects
inferredcites →https://doi.org/10.1111/2041-210x.12254openalex-snapshot
Statistics for citizen science: extracting signals of change from noisy ecological data
inferredcites →https://doi.org/10.1111/ddi.12083openalex-snapshot
Online solutions and the ‘ W allacean shortfall’: what does GBIF contribute to our knowledge of species' ranges?
inferredcites →https://doi.org/10.1111/ele.12624openalex-snapshot
Multidimensional biases, gaps and uncertainties in global plant occurrence information
inferredcites →https://doi.org/10.1111/ele.12770openalex-snapshot
Linking macroecology and community ecology: refining predictions of species distributions using biotic interaction networks
inferredcites →https://doi.org/10.1111/geb.12039openalex-snapshot
Mapping the biodiversity of tropical insects: species richness and inventory completeness of A frican sphingid moths
inferredcites →https://doi.org/10.1111/geb.12216openalex-snapshot
Accounting for imperfect detection and survey bias in statistical analysis of presence‐only data
inferredcites →https://doi.org/10.1111/geb.12326openalex-snapshot
Estimating species diversity and distribution in the era of B ig D ata: to what extent can we trust public databases?
inferredcites →https://doi.org/10.1111/geb.12483openalex-snapshot
Range geometry and socio‐economics dominate species‐level biases in occurrence information
inferredcites →https://doi.org/10.1111/j.1095-8649.2011.03073.xopenalex-snapshot
Communication gaps in knowledge of freshwater fish biodiversity: implications for the management and conservation of Mexican biosphere reserves
inferredcites →https://doi.org/10.1111/j.1365-2699.2010.02416.xopenalex-snapshot
Improving species distribution models for climate change studies: variable selection and scale
inferredcites →https://doi.org/10.1111/j.1366-9516.2005.00164.xopenalex-snapshot
Strengths and weaknesses of museum and national survey data sets for predicting regional species richness: comparative and combined approaches
inferredcites →https://doi.org/10.1111/j.1469-185x.2009.00098.xopenalex-snapshot
Biological collections and ecological/environmental research: a review, some observations and a look to the future
inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01678.xopenalex-snapshot
bold : The Barcode of Life Data System (http://www.barcodinglife.org)
inferredcites →https://doi.org/10.1111/j.1472-4642.2008.00474.xopenalex-snapshot
Bias in freshwater biodiversity sampling: the case of Iberian water beetles
inferredcites →https://doi.org/10.1111/j.1502-3931.1976.tb00958.xopenalex-snapshot
Relative abundances of living and dead molluscs in two Californian lagoons
inferredcites →https://doi.org/10.1111/j.1523-1739.2004.00233.xopenalex-snapshot
Significance of Specimen Databases from Taxonomic Revisions for Estimating and Mapping the Global Species Diversity of Invertebrates and Repatriating Reliable Specimen Data
inferredcites →https://doi.org/10.1111/j.1600-0587.2012.07364.xopenalex-snapshot
What's on the horizon for macroecology?
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00157.xopenalex-snapshot
Combining static and dynamic variables in species distribution models under climate change
inferredcites →https://doi.org/10.1111/nph.14855openalex-snapshot
Widespread sampling biases in herbaria revealed from large‐scale digitization
inferredcites →https://doi.org/10.1126/science.1194442openalex-snapshot
The Impact of Conservation on the Status of the World’s Vertebrates
inferredcites →https://doi.org/10.1126/science.1246752openalex-snapshot
The biodiversity of species and their rates of extinction, distribution, and protection
inferredcites →https://doi.org/10.1139/z82-173openalex-snapshot
Overcoming sampling bias in studies of terrestrial gastropods
inferredcites →https://doi.org/10.1186/1471-2105-12-s15-s1openalex-snapshot
Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group
inferredcites →https://doi.org/10.1186/1471-2105-12-s15-s2openalex-snapshot
The data paper: a mechanism to incentivize data publishing in biodiversity science
inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s1openalex-snapshot
Overview of the BioCreative III Workshop
inferredcites →https://doi.org/10.1186/1471-2105-12-s9-s2openalex-snapshot
Evolution of orthologous tandemly arrayed gene clusters
inferredcites →https://doi.org/10.1186/1471-2105-14-16openalex-snapshot
The taxonomic name resolution service: an online tool for automated standardization of plant names
inferredcites →https://doi.org/10.1186/1742-9994-8-25openalex-snapshot
The taxonomist - an endangered race. A practical proposal for its survival
inferredcites →https://doi.org/10.1186/s12898-015-0046-8openalex-snapshot
A global perspective on decadal challenges and priorities in biodiversity informatics
inferredcites →https://doi.org/10.12688/f1000research.2-191.v1openalex-snapshot
taxize: taxonomic search and retrieval in R
inferredcites →https://doi.org/10.12688/f1000research.2-191.v2openalex-snapshot
taxize: taxonomic search and retrieval in R.
inferredcites →https://doi.org/10.1371/journal.pbio.1000385openalex-snapshot
Distorted Views of Biodiversity: Spatial and Temporal Bias in Species Occurrence Data
inferredcites →https://doi.org/10.1371/journal.pbio.2001414openalex-snapshot
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
inferredcites →https://doi.org/10.1371/journal.pone.0051629openalex-snapshot
Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases
inferredcites →https://doi.org/10.1371/journal.pone.0125629openalex-snapshot
Are We Filling the Data Void? An Assessment of the Amount and Extent of Plant Collection Records and Census Data Available for Tropical South America
inferredcites →https://doi.org/10.1371/journal.pone.0131080openalex-snapshot
Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps
inferredcites →https://doi.org/10.1371/journal.pone.0143402openalex-snapshot
Inselect: Automating the Digitization of Natural History Collections
inferredcites →https://doi.org/10.1371/journal.pone.0146894openalex-snapshot
A Standardized Reference Data Set for Vertebrate Taxon Name Resolution
inferredcites →https://doi.org/10.1371/journal.pone.0185809openalex-snapshot
More than 75 percent decline over 27 years in total flying insect biomass in protected areas
inferredcites →https://doi.org/10.1371/journal.pone.0195736openalex-snapshot
The tempo and mode of the taxonomic correction process: How taxonomists have corrected and recorrected North American bird species over the last 127 years
inferredcites →https://doi.org/10.1371/journal.pone.0199327openalex-snapshot
Spatial and topical imbalances in biodiversity research
inferredcites →https://doi.org/10.1525/bio.2009.59.5.9openalex-snapshot
Motivating Online Publication of Data
inferredcites →https://doi.org/10.1525/bio.2011.61.12.4openalex-snapshot
Are We Losing the Science of Taxonomy?
inferredcites →https://doi.org/10.1525/bio.2011.61.9.4openalex-snapshot
New Push to Bring US Biological Collections to the World's Online Community
inferredcites →https://doi.org/10.1525/bio.2013.63.1.2openalex-snapshot
Biodiversity Data Sharing: Will Peer-Reviewed Data Papers Work?
inferredcites →https://doi.org/10.1603/0013-8746(2005)098[0941:jhiaai]2.0.co;2openalex-snapshot
Just How Imperiled Are Aquatic Insects? A Case Study of Stoneflies (Plecoptera) in Illinois
inferredcites →https://doi.org/10.1641/0006-3568(2004)054[0066:tvomcf]2.0.co;2openalex-snapshot
The Value of Museum Collections for Research and Society
inferredcites →https://doi.org/10.17161/bi.v7i2.3987openalex-snapshot
Leveraging the fullest potential of scientific collections through digitisation.
inferredcites →https://doi.org/10.17161/bi.v7i2.3990openalex-snapshot
TOWARDS DEMAND DRIVEN PUBLISHING: APPROCHES TO THE PRIORITISATION OF DIGITISATION OF NATURAL HISTORY COLLECTIONS DATA
inferredcites →https://doi.org/10.17161/bi.v8i2.4094openalex-snapshot
Assessment of user needs of primary biodiversity data: Analysis, concerns, and challenges
inferredcites →https://doi.org/10.17161/bi.v8i2.4126openalex-snapshot
Bridging the biodiversity data gaps: Recommendations to meet users’ data needs
inferredcites →https://doi.org/10.31219/osf.io/s2p73openalex-snapshot
ALICE: Angled Label Image Capture and Extraction for high throughput insect specimen digitisation
inferredcites →https://doi.org/10.3354/esr00345openalex-snapshot
Rediscovery, conservation status and taxonomic assessment of Melicope degeneri (Rutaceae), Kaua‘i, Hawai‘i
inferredcites →https://doi.org/10.3897/bdj.2.e4221openalex-snapshot
A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control
inferredcites →https://doi.org/10.3897/bdj.3.e5361openalex-snapshot
Displaying bias in sampling effort of data accessed from biodiversity databases using ignorance maps
inferredcites →https://doi.org/10.3897/bdj.7.e32342openalex-snapshot
A Novel Automated Mass Digitisation Workflow for Natural History Microscope Slides
inferredcites →https://doi.org/10.3897/biss.2.25738openalex-snapshot
Biodiversity Information Services: A (not-so-) little knowledge that acts
inferredcites →https://doi.org/10.3897/biss.2.26003openalex-snapshot
Challenges For Implementing Collections Data Quality Feedback: synthesizing the community experience
inferredcites →https://doi.org/10.3897/biss.2.26300openalex-snapshot
Putting your Finger upon the Simplest Data
inferredcites →https://doi.org/10.3897/zookeys.209.3125openalex-snapshot
Increasing the efficiency of digitization workflows for herbarium specimens
inferredcites →https://doi.org/10.3897/zookeys.209.3135openalex-snapshot
Five task clusters that enable efficient and effective digitization of biological collections
inferredcites →https://doi.org/10.3897/zookeys.209.3169openalex-snapshot
Whole-drawer imaging for digital management and curation of a large entomological collection
inferredcites →https://doi.org/10.3897/zookeys.209.3178openalex-snapshot
No specimen left behind: industrial scale digitization of natural history collections
inferredcites →https://doi.org/10.3897/zookeys.209.3313openalex-snapshot
Mass digitization of scientific collections: New opportunities to transform the use of biological specimens and underwrite biodiversity science
inferredcites →https://doi.org/10.3897/zookeys.482.8453openalex-snapshot
California dragonfly and damselfly (Odonata) database: temporal and spatial distribution of species records collected over the past century
inferredcites →https://doi.org/10.4003/006.032.0204openalex-snapshot
A New Critical Estimate of Named Species-Level Diversity of the Recent Mollusca*
inferredcites →https://doi.org/10.4003/006.036.0202openalex-snapshot
Mobilizing Mollusks: Status Update on Mollusk Collections in the U.S.A. and Canada
inferredcites →https://doi.org/10.5281/zenodo.2589438openalex-snapshot
Bibliographic dataset characterizing studies that use online biodiversity databases
inferredcites →https://doi.org/10.5334/dsj-2017-009openalex-snapshot
20 Years of Persistent Identifiers – Which Systems are Here to Stay?
inferredcites →https://doi.org/10.5334/jcms.1021218openalex-snapshot
Whole-Drawer Imaging of Entomological Collections: Benefits, Limitations and Alternative Applications
inferredcites →https://doi.org/10.7287/peerj.preprints.26819openalex-snapshot
Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal?
inferredcites →https://doi.org/10.7287/peerj.preprints.26819v1openalex-snapshot
Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal?
inferredcites →https://doi.org/10.7710/2162-3309.1035openalex-snapshot
The Anatomy of a Data Citation: Discovery, Reuse, and Credit
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics
inferredcites →https://doi.org/10.7717/peerj.2743openalex-snapshot
Biodiversity data obsolescence and land uses changes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Check list of the Venezuelan millipedes species
inferred← citeshttps://doi.org/10.1002/ece3.8299openalex-snapshot
occAssess: An R package for assessing potential biases in species occurrence data
inferred← citeshttps://doi.org/10.1016/j.pld.2023.06.003openalex-snapshot
How to fill the biodiversity data gap: Is it better to invest in fieldwork or curation?
inferred← citeshttps://doi.org/10.1038/s41597-025-05333-wopenalex-snapshot
Spatial occurrence records and distributions of tropical Asian butterflies
inferred← citeshttps://doi.org/10.1093/oso/9780192898623.003.0029openalex-snapshot
Bridging people and nature through Odonata
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Impact of obscured data on species distribution models
inferred← citeshttps://doi.org/10.1111/jfb.14167openalex-snapshot
Awareness and use of biodiversity collections by fish biologists
inferred← citeshttps://doi.org/10.11606/t.41.2020.tde-05042021-152618openalex-snapshot
Desvendando padrões de endemismo e sua relação com o clima na região Neotropical: um estudo de caso com a tribo Bignonieae (Bignoniaceae)
inferred← citeshttps://doi.org/10.12681/mms.23117openalex-snapshot
Ecology, distribution and expansion of a Mediterranean native invader, the fireworm Hermodice carunculata (Annelida)
inferred← citeshttps://doi.org/10.12681/mms.28526openalex-snapshot
Τhe fish fauna in lentic ecosystems of Greece
inferred← citeshttps://doi.org/10.1371/journal.pone.0306440openalex-snapshot
Biodiversity patterns of epipelagic copepods in the South Pacific Ocean: Strengths and limitations of current data bases
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The South African National Red List of spiders: patterns, threats, and conservation
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3326362/v1openalex-snapshot
Classification of Aerial Cactus for Conserving Biodiversity Hotspot Zones using Deep Convolutional Neural Network VGG16
inferred← citeshttps://doi.org/10.2139/ssrn.4871564openalex-snapshot
Association of Iucn-Threatened Indian Mangroves: A Novel Data-Driven Rule Filtering Approach for Restoration Strategy
inferred← citeshttps://doi.org/10.3119/20-13openalex-snapshot
Declining Native Species Richness in Natural Areas in Eastern North America: An Example from Baker Woodlot in Central Michigan
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Sales and Marketing Strategies in The Marketplace by Businesses in Solo Raya
inferred← citeshttps://doi.org/10.32942/osf.io/rsbaxopenalex-snapshot
Fine-scale spatial distribution of biodiversity citizen science in a natural area depends on area accessibility and differs from other recreational area use
inferred← citeshttps://doi.org/10.3390/d13060255openalex-snapshot
Citizen Science Contributions to Address Biodiversity Loss and Conservation Planning in a Rapidly Developing Region
inferred← citeshttps://doi.org/10.3390/data8050076openalex-snapshot
A Dataset of Marine Macroinvertebrate Diversity from Mozambique and São Tomé and Príncipe
inferred← citeshttps://doi.org/10.3390/fishes6030024openalex-snapshot
Integrating Literature, Biodiversity Databases, and Citizen-Science to Reconstruct the Checklist of Chondrichthyans in Cyprus (Eastern Mediterranean Sea)
inferred← citeshttps://doi.org/10.3390/su17209062openalex-snapshot
Advancing Sustainable Construction Through 5D Digital EIA and Ecosystem Restoration
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Outlining the aims and format of the project «Digitisation of natural history collections damaged as a result of hostilities and related factors: development of protocols and implementation based on the State Museum of Natural History of the National Academy of Sciences of Ukraine»
inferred← citeshttps://doi.org/10.46232/glashbod.8.2.4openalex-snapshot
Thirty years with Flora Croatica database
inferred← citeshttps://doi.org/10.5334/cstp.825openalex-snapshot
Consistency and Validity of Participatory Science Data: A Comparison of Seasonality Patterns of Northern California and Nevada Birds Across eBird and iNaturalist
inferred← citeshttps://doi.org/10.5334/dsj-2021-011openalex-snapshot
Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences
inferred← citeshttps://doi.org/10.7287/peerj-cs.277v0.1/reviews/1openalex-snapshot
Peer Review #1 of "An expert study on hierarchy comparison methods applied to biological taxonomies curation (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj-cs.277v0.1/reviews/2openalex-snapshot
Peer Review #2 of "An expert study on hierarchy comparison methods applied to biological taxonomies curation (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj-cs.277v0.1/reviews/3openalex-snapshot
Peer Review #3 of "An expert study on hierarchy comparison methods applied to biological taxonomies curation (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj-cs.277v0.2/reviews/1openalex-snapshot
Peer Review #1 of "An expert study on hierarchy comparison methods applied to biological taxonomies curation (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj-cs.277v0.2/reviews/3openalex-snapshot
Peer Review #3 of "An expert study on hierarchy comparison methods applied to biological taxonomies curation (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.8086v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Assessment of North American arthropod collections: prospects and challenges for addressing biodiversity research (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.8086v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Assessment of North American arthropod collections: prospects and challenges for addressing biodiversity research (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.8086openalex-snapshot
Assessment of North American arthropod collections: prospects and challenges for addressing biodiversity research
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.