On the public citation graph

Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment

https://doi.org/10.1101/605634
0 signed · 111 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-030-00934-2_35openalex-snapshot
Synaptic Partner Prediction from Point Annotations in Insect Brains
inferredcites →https://doi.org/10.1007/978-3-030-00934-2_36openalex-snapshot
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain
inferredcites →https://doi.org/10.1007/978-3-319-24553-9_81openalex-snapshot
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain
inferredcites →https://doi.org/10.1007/s12021-017-9341-1openalex-snapshot
A Topological Representation of Branching Neuronal Morphologies
inferredcites →https://doi.org/10.1016/b978-0-12-336156-1.50061-6openalex-snapshot
Contrast Limited Adaptive Histogram Equalization
inferredcites →https://doi.org/10.1016/j.bpj.2018.11.1651openalex-snapshot
Dendritic Spine Geometry and Ultrastructure Dictate the Spatiotemporal Dynamics of Second Messengers
inferredcites →https://doi.org/10.1016/j.cell.2015.06.054openalex-snapshot
Saturated Reconstruction of a Volume of Neocortex
inferredcites →https://doi.org/10.1016/j.cell.2018.06.019openalex-snapshot
A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
inferredcites →https://doi.org/10.1016/j.conb.2018.04.030openalex-snapshot
Progress and remaining challenges in high-throughput volume electron microscopy
inferredcites →https://doi.org/10.1016/j.cub.2022.06.031openalex-snapshot
Structured sampling of olfactory input by the fly mushroom body
inferredcites →https://doi.org/10.1016/j.neuron.2015.09.003openalex-snapshot
SegEM: Efficient Image Analysis for High-Resolution Connectomics
inferredcites →https://doi.org/10.1016/j.neuron.2016.06.012openalex-snapshot
NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases
inferredcites →https://doi.org/10.1016/j.neuron.2018.08.037openalex-snapshot
Communication from Learned to Innate Olfactory Processing Centers Is Required for Memory Retrieval in Drosophila
inferredcites →https://doi.org/10.1016/s0165-0173(02)00158-3openalex-snapshot
Dendritic Spine Pathology: Cause or Consequence of Neurological Disorders?
inferredcites →https://doi.org/10.1038/nature09802openalex-snapshot
Network anatomy and in vivo physiology of visual cortical neurons
inferredcites →https://doi.org/10.1038/nature12346openalex-snapshot
Connectomic reconstruction of the inner plexiform layer in the mouse retina
inferredcites →https://doi.org/10.1038/nature12450openalex-snapshot
A visual motion detection circuit suggested by Drosophila connectomics
inferredcites →https://doi.org/10.1038/nature13240openalex-snapshot
Space–time wiring specificity supports direction selectivity in the retina
inferredcites →https://doi.org/10.1038/nature14297openalex-snapshot
A multilevel multimodal circuit enhances action selection in Drosophila
inferredcites →https://doi.org/10.1038/nature17192openalex-snapshot
Anatomy and function of an excitatory network in the visual cortex
inferredcites →https://doi.org/10.1038/nature22356openalex-snapshot
Whole-brain serial-section electron microscopy in larval zebrafish
inferredcites →https://doi.org/10.1038/nature24005openalex-snapshot
Axonal synapse sorting in medial entorhinal cortex
inferredcites →https://doi.org/10.1038/ncomms4512openalex-snapshot
A genetic and computational approach to structurally classify neuronal types
inferredcites →https://doi.org/10.1038/nmeth.2072openalex-snapshot
Elastic volume reconstruction from series of ultra-thin microscopy sections
inferredcites →https://doi.org/10.1038/nn.4290openalex-snapshot
Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb
inferredcites →https://doi.org/10.1038/s41592-018-0049-4openalex-snapshot
High-precision automated reconstruction of neurons with flood-filling networks
inferredcites →https://doi.org/10.1038/s41592-021-01330-0openalex-snapshot
FlyWire: online community for whole-brain connectomics
inferredcites →https://doi.org/10.1038/srep20259openalex-snapshot
Organization of descending neurons in Drosophila melanogaster
inferredcites →https://doi.org/10.1073/pnas.1509820112openalex-snapshot
Synaptic circuits and their variations within different columns in the visual system of Drosophila
inferredcites →https://doi.org/10.1093/bioinformatics/btp266openalex-snapshot
CATMAID: collaborative annotation toolkit for massive amounts of image data
inferredcites →https://doi.org/10.1093/med/9780190636111.001.0001openalex-snapshot
Handbook of Brain Microcircuits
inferredcites →https://doi.org/10.1093/med/9780195389883.001.0001openalex-snapshot
Handbook of Brain Microcircuits
inferredcites →https://doi.org/10.1098/rspb.2018.2727openalex-snapshot
Neural arbors are Pareto optimal
inferredcites →https://doi.org/10.1098/rstb.1986.0056openalex-snapshot
The structure of the nervous system of the nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1101/2019.12.12.874172openalex-snapshot
Automatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM Dataset
inferredcites →https://doi.org/10.1101/2020.01.21.911859openalex-snapshot
A Connectome of the Adult Drosophila Central Brain
inferredcites →https://doi.org/10.1101/394403openalex-snapshot
Neural circuit basis of aversive odour processing in Drosophila from sensory input to descending output
inferredcites →https://doi.org/10.1101/548081openalex-snapshot
Segmentation-Enhanced CycleGAN
inferredcites →https://doi.org/10.1109/aipr.2016.8010595openalex-snapshot
Registering large volume serial-section electron microscopy image sets for neural circuit reconstruction using FFT signal whitening
inferredcites →https://doi.org/10.1109/pccga.2000.883951openalex-snapshot
TEASAR: tree-structure extraction algorithm for accurate and robust skeletons
inferredcites →https://doi.org/10.1109/tpami.2018.2835450openalex-snapshot
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction
inferredcites →https://doi.org/10.1371/journal.pcbi.1001066openalex-snapshot
Structural Properties of the Caenorhabditis elegans Neuronal Network
inferredcites →https://doi.org/10.3389/fncir.2018.00087openalex-snapshot
Fully-Automatic Synapse Prediction and Validation on a Large Data Set
inferredcites →https://doi.org/10.3390/molecules17010355openalex-snapshot
Synthesis and 5α-Reductase Inhibitory Activity of C21 Steroids Having 1,4-diene or 4,6-diene 20-ones and 4-Azasteroid 20-Oximes
inferredcites →https://doi.org/10.48550/arxiv.1409.1892openalex-snapshot
Automatic Neuron Type Identification by Neurite Localization in the Drosophila Medulla
inferredcites →https://doi.org/10.48550/arxiv.1706.00120openalex-snapshot
Superhuman Accuracy on the SNEMI3D Connectomics Challenge
inferredcites →https://doi.org/10.48550/arxiv.1804.10019openalex-snapshot
Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach
inferredcites →https://doi.org/10.7554/elife.12059openalex-snapshot
Quantitative neuroanatomy for connectomics in Drosophila
inferredcites →https://doi.org/10.7554/elife.24364openalex-snapshot
EM connectomics reveals axonal target variation in a sequence-generating network
inferredcites →https://doi.org/10.7554/elife.24394openalex-snapshot
The comprehensive connectome of a neural substrate for ‘ON’ motion detection in Drosophila
inferredcites →https://doi.org/10.7554/elife.26975openalex-snapshot
A connectome of a learning and memory center in the adult Drosophila brain
inferredcites →https://doi.org/10.7554/elife.44590openalex-snapshot
Functional and anatomical specificity in a higher olfactory centre

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/cne.24877openalex-snapshot
Wiring patterns from auditory sensory neurons to the escape and song‐relay pathways in fruit flies
inferred← citeshttps://doi.org/10.1007/978-3-030-59722-1_9openalex-snapshot
Neuronal Subcompartment Classification and Merge Error Correction
inferred← citeshttps://doi.org/10.1007/978-3-030-66415-2_26openalex-snapshot
Learning to Restore ssTEM Images from Deformation and Corruption
inferred← citeshttps://doi.org/10.1007/s00359-023-01616-yopenalex-snapshot
Lineages to circuits: the developmental and evolutionary architecture of information channels into the central complex
inferred← citeshttps://doi.org/10.1007/s00422-019-00810-zopenalex-snapshot
The case for emulating insect brains using anatomical “wiring diagrams” equipped with biophysical models of neuronal activity
inferred← citeshttps://doi.org/10.1007/s10921-020-00734-wopenalex-snapshot
Exploring Flood Filling Networks for Instance Segmentation of XXL-Volumetric and Bulk Material CT Data
inferred← citeshttps://doi.org/10.1016/j.cell.2020.12.013openalex-snapshot
Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy
inferred← citeshttps://doi.org/10.1016/j.cell.2023.04.038openalex-snapshot
Generating parallel representations of position and identity in the olfactory system
inferred← citeshttps://doi.org/10.1016/j.cois.2019.09.001openalex-snapshot
What can a non-eusocial insect tell us about the neural basis of group behaviour?
inferred← citeshttps://doi.org/10.1016/j.cois.2019.09.004openalex-snapshot
The prandial process in flies
inferred← citeshttps://doi.org/10.1016/j.conb.2019.03.012openalex-snapshot
Big data in nanoscale connectomics, and the greed for training labels
inferred← citeshttps://doi.org/10.1016/j.cub.2020.05.077openalex-snapshot
Input Connectivity Reveals Additional Heterogeneity of Dopaminergic Reinforcement in Drosophila
inferred← citeshttps://doi.org/10.1016/j.cub.2020.06.028openalex-snapshot
Connectomics Analysis Reveals First-, Second-, and Third-Order Thermosensory and Hygrosensory Neurons in the Adult Drosophila Brain
inferred← citeshttps://doi.org/10.1016/j.cub.2020.06.042openalex-snapshot
Complete Connectomic Reconstruction of Olfactory Projection Neurons in the Fly Brain
inferred← citeshttps://doi.org/10.1016/j.cub.2022.06.031openalex-snapshot
Structured sampling of olfactory input by the fly mushroom body
inferred← citeshttps://doi.org/10.1016/j.jneumeth.2020.108804openalex-snapshot
DDeep3M: Docker-powered deep learning for biomedical image segmentation
inferred← citeshttps://doi.org/10.1016/j.pbiomolbio.2021.06.005openalex-snapshot
It's clearly the heart! Optical transparency, cardiac tissue imaging, and computer modelling
inferred← citeshttps://doi.org/10.1017/s1431927621013799openalex-snapshot
Fast Improvement of TEM Images with Low-Dose Electrons by Deep Learning
inferred← citeshttps://doi.org/10.1038/s41467-023-44354-0openalex-snapshot
Petascale pipeline for precise alignment of images from serial section electron microscopy
inferred← citeshttps://doi.org/10.1038/s41586-025-09276-5openalex-snapshot
Eye structure shapes neuron function in Drosophila motion vision
inferred← citeshttps://doi.org/10.1038/s41592-019-0403-1openalex-snapshot
Deep learning for cellular image analysis
inferred← citeshttps://doi.org/10.1038/s41592-021-01330-0openalex-snapshot
FlyWire: online community for whole-brain connectomics
inferred← citeshttps://doi.org/10.1038/s41592-022-01711-zopenalex-snapshot
Local shape descriptors for neuron segmentation
inferred← citeshttps://doi.org/10.1038/s41598-019-55431-0openalex-snapshot
UNI-EM: An Environment for Deep Neural Network-Based Automated Segmentation of Neuronal Electron Microscopic Images
inferred← citeshttps://doi.org/10.1080/01677063.2020.1712598openalex-snapshot
Towards a functional connectome in Drosophila
inferred← citeshttps://doi.org/10.1101/006353openalex-snapshot
The natverse: a versatile computational toolbox to combine and analyse neuroanatomical data
inferred← citeshttps://doi.org/10.1101/2019.12.12.874172openalex-snapshot
Automatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM Dataset
inferred← citeshttps://doi.org/10.1101/2020.01.21.911859openalex-snapshot
A Connectome of the Adult Drosophila Central Brain
inferred← citeshttps://doi.org/10.1101/2020.06.08.141341openalex-snapshot
Convergence of distinct subpopulations of mechanosensory neurons onto a neural circuit that elicits grooming
inferred← citeshttps://doi.org/10.1101/2020.06.12.148775openalex-snapshot
Neurotransmitter Classification from Electron Microscopy Images at Synaptic Sites in Drosophila Melanogaster
inferred← citeshttps://doi.org/10.1101/2021.07.28.454025openalex-snapshot
Functional connectomics spanning multiple areas of mouse visual cortex
inferred← citeshttps://doi.org/10.1101/2021.07.29.454371openalex-snapshot
Large-scale dendritic spine extraction and analysis through petascale computing
inferred← citeshttps://doi.org/10.1101/2021.08.04.455162openalex-snapshot
Petascale neural circuit reconstruction: automated methods
inferred← citeshttps://doi.org/10.1101/2022.12.14.520178openalex-snapshot
Eye structure shapes neuron function in Drosophila motion vision
inferred← citeshttps://doi.org/10.1101/2023.06.07.544074openalex-snapshot
Organization of an Ascending Circuit that Conveys Flight Motor State
inferred← citeshttps://doi.org/10.1101/2023.10.16.562634openalex-snapshot
A comprehensive neuroanatomical survey of the Drosophila Lobula Plate Tangential Neurons with predictions for their optic flow sensitivity
inferred← citeshttps://doi.org/10.1101/2024.02.26.582148openalex-snapshot
Neurons underlying aggressive actions that are shared by both males and females in Drosophila
inferred← citeshttps://doi.org/10.1109/iccea50009.2020.00199openalex-snapshot
Breast Lesion Segmentation in Ultrasound Images by CDeep3M
inferred← citeshttps://doi.org/10.1523/jneurosci.0552-20.2020openalex-snapshot
The Wiring Logic of an Identified Serotonergic Neuron That Spans Sensory Networks
inferred← citeshttps://doi.org/10.3389/fnana.2021.759816openalex-snapshot
Efficient and Accurate Synapse Detection With Selective Structured Illumination Microscopy on the Putative Regions of Interest of Ultrathin Serial Sections
inferred← citeshttps://doi.org/10.3389/fncom.2020.00039openalex-snapshot
Crossing the Cleft: Communication Challenges Between Neuroscience and Artificial Intelligence
inferred← citeshttps://doi.org/10.3390/brainsci10050314openalex-snapshot
Massive Data Management and Sharing Module for Connectome Reconstruction
inferred← citeshttps://doi.org/10.48550/arxiv.2111.11647openalex-snapshot
Inducing Functions through Reinforcement Learning without Task Specification
inferred← citeshttps://doi.org/10.64898/2026.07.13.738197openalex-snapshot
Deep anatomical and ultrastructural classification of neurons in the zebrafish olfactory bulb
inferred← citeshttps://doi.org/10.7554/elife.112715openalex-snapshot
Deep anatomical and ultrastructural classification of neurons in the zebrafish olfactory bulb
inferred← citeshttps://doi.org/10.7554/elife.112715.1openalex-snapshot
Deep anatomical and ultrastructural classification of neurons in the zebrafish olfactory bulb
inferred← citeshttps://doi.org/10.7554/elife.53350openalex-snapshot
The natverse, a versatile toolbox for combining and analysing neuroanatomical data
inferred← citeshttps://doi.org/10.7554/elife.57443openalex-snapshot
A connectome and analysis of the adult Drosophila central brain
inferred← citeshttps://doi.org/10.7554/elife.59976openalex-snapshot
Distinct subpopulations of mechanosensory chordotonal organ neurons elicit grooming of the fruit fly antennae
inferred← citeshttps://doi.org/10.7554/elife.66018openalex-snapshot
Information flow, cell types and stereotypy in a full olfactory connectome
inferred← citeshttps://doi.org/10.7554/elife.66039openalex-snapshot
A connectome of the Drosophila central complex reveals network motifs suitable for flexible navigation and context-dependent action selection
inferred← citeshttps://doi.org/10.7554/elife.76120openalex-snapshot
Binary and analog variation of synapses between cortical pyramidal neurons
inferred← citeshttps://doi.org/10.7554/elife.79887openalex-snapshot
Taste quality and hunger interactions in a feeding sensorimotor circuit
inferred← citeshttps://doi.org/10.7554/elife.88824openalex-snapshot
The unique synaptic circuitry of specialized olfactory glomeruli in Drosophila melanogaster
inferred← citeshttps://doi.org/10.7554/elife.88824.1openalex-snapshot
The unique synaptic circuitry of specialized olfactory glomeruli in Drosophila melanogaster
inferred← citeshttps://doi.org/10.7554/elife.88824.2openalex-snapshot
The unique synaptic circuitry of specialized olfactory glomeruli in Drosophila melanogaster
inferred← citeshttps://doi.org/10.7554/elife.88824.3openalex-snapshot
The unique synaptic circuitry of specialized olfactory glomeruli in Drosophila melanogaster
inferred← citeshttps://doi.org/10.7554/elife.93659openalex-snapshot
A comprehensive neuroanatomical survey of the Drosophila Lobula Plate Tangential Neurons with predictions for their optic flow sensitivity
inferred← citeshttps://doi.org/10.7554/elife.93659.1openalex-snapshot
A comprehensive neuroanatomical survey of the Drosophila Lobula Plate Tangential Neurons with predictions for their optic flow sensitivity
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.