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Mapping-based Genome Size Estimation
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/anbo.1998.0730openalex-snapshot
Plant Genome Size Estimation by Flow Cytometry: Inter-laboratory Comparison*1
inferredcites →https://doi.org/10.1007/bf02672069openalex-snapshot
Nuclear DNA content of some important plant species
inferredcites →https://doi.org/10.1007/s00122-017-2991-4openalex-snapshot
Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato
inferredcites →https://doi.org/10.1007/s13199-012-0154-6openalex-snapshot
Simultaneous genome sequencing of symbionts and their hosts
inferredcites →https://doi.org/10.1016/0147-5975(90)90053-vopenalex-snapshot
Genome size and complexity of the obligate fungal pathogen, Bremia lactucae
inferredcites →https://doi.org/10.1016/j.bpj.2010.10.052openalex-snapshot
Sequence-Specific Ultrasonic Cleavage of DNA
inferredcites →https://doi.org/10.1016/j.cell.2016.05.063openalex-snapshot
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/j.cj.2016.04.001openalex-snapshot
Comprehensive cytological characterization of the Gossypium hirsutum genome based on the development of a set of chromosome cytological markers
inferredcites →https://doi.org/10.1016/j.cj.2021.04.003openalex-snapshot
Oryza pan-genomics: A new foundation for future rice research and improvement
inferredcites →https://doi.org/10.1016/j.molp.2015.08.011openalex-snapshot
The Structural Features of Thousands of T-DNA Insertion Sites Are Consistent with a Double-Strand Break Repair-Based Insertion Mechanism
inferredcites →https://doi.org/10.1016/j.molp.2021.06.018openalex-snapshot
Two gap-free reference genomes and a global view of the centromere architecture in rice
inferredcites →https://doi.org/10.1016/j.molp.2022.05.014openalex-snapshot
A near-complete assembly of an Arabidopsis thaliana genome
inferredcites →https://doi.org/10.1016/j.molp.2023.08.003openalex-snapshot
A complete assembly of the rice Nipponbare reference genome
inferredcites →https://doi.org/10.1016/j.xplc.2023.100722openalex-snapshot
High-quality Gossypium hirsutum and Gossypium barbadense genome assemblies reveal the landscape and evolution of centromeres
inferredcites →https://doi.org/10.1017/qpb.2021.18openalex-snapshot
Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
inferredcites →https://doi.org/10.1038/35048692openalex-snapshot
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/hdy.2013.51openalex-snapshot
Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: size, relative age and chromosomal localization
inferredcites →https://doi.org/10.1038/nature08747openalex-snapshot
Genome sequencing and analysis of the model grass Brachypodium distachyon
inferredcites →https://doi.org/10.1038/nature12817openalex-snapshot
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
inferredcites →https://doi.org/10.1038/nbt.3238openalex-snapshot
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
inferredcites →https://doi.org/10.1038/nbt.3682openalex-snapshot
Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation
inferredcites →https://doi.org/10.1038/nprot.2016.182openalex-snapshot
DNA sequencing technologies: 2006–2016
inferredcites →https://doi.org/10.1038/nrg.2016.49openalex-snapshot
Coming of age: ten years of next-generation sequencing technologies
inferredcites →https://doi.org/10.1038/nrg2626openalex-snapshot
Sequencing technologies — the next generation
inferredcites →https://doi.org/10.1038/s41467-018-03016-2openalex-snapshot
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
inferredcites →https://doi.org/10.1038/s41467-020-14998-3openalex-snapshot
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
inferredcites →https://doi.org/10.1038/s41477-018-0166-1openalex-snapshot
A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits
inferredcites →https://doi.org/10.1038/s41588-020-0614-5openalex-snapshot
Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
inferredcites →https://doi.org/10.1038/s41588-024-01715-9openalex-snapshot
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range
inferredcites →https://doi.org/10.1038/sdata.2014.45openalex-snapshot
Long-read, whole-genome shotgun sequence data for five model organisms
inferredcites →https://doi.org/10.1038/srep04532openalex-snapshot
Non-random DNA fragmentation in next-generation sequencing
inferredcites →https://doi.org/10.1046/j.1365-313x.1994.6050665.xopenalex-snapshot
Analysis of phytochrome‐ and ABA‐deficient mutants suggests that ABA degradation is controlled by light in Nicotiana plumbaginifolia
inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
inferredcites →https://doi.org/10.1073/pnas.1607532113openalex-snapshot
Chromosome-level assembly of Arabidopsis thaliana L er reveals the extent of translocation and inversion polymorphisms
inferredcites →https://doi.org/10.1073/pnas.1705233114openalex-snapshot
Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit
inferredcites →https://doi.org/10.1073/pnas.212325299openalex-snapshot
Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate
inferredcites →https://doi.org/10.1093/aob/mcg057openalex-snapshot
Comparisons with Caenorhabditis (100 Mb) and Drosophila (175 Mb) Using Flow Cytometry Show Genome Size in Arabidopsis to be 157 Mb and thus 25 % Larger than the Arabidopsis Genome Initiative Estimate of 125 Mb
inferredcites →https://doi.org/10.1093/aob/mch037openalex-snapshot
Genome Size Variation among Accessions of Arabidopsis thaliana
inferredcites →https://doi.org/10.1093/aob/mcq258openalex-snapshot
Nuclear DNA amounts in angiosperms: targets, trends and tomorrow
inferredcites →https://doi.org/10.1093/bib/bbac146openalex-snapshot
Benchmarking of long-read sequencing, assemblers and polishers for yeast genome
inferredcites →https://doi.org/10.1093/bioinformatics/btab705openalex-snapshot
New strategies to improve minimap2 alignment accuracy
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr011openalex-snapshot
A fast, lock-free approach for efficient parallel counting of occurrences of k -mers
inferredcites →https://doi.org/10.1093/bioinformatics/btt310openalex-snapshot
Informed and automated k -mer size selection for genome assembly
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/btx153openalex-snapshot
GenomeScope: fast reference-free genome profiling from short reads
inferredcites →https://doi.org/10.1093/bioinformatics/btx396openalex-snapshot
PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btx637openalex-snapshot
findGSE : estimating genome size variation within human and Arabidopsis using k -mer frequencies
inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot
Minimap2: pairwise alignment for nucleotide sequences
inferredcites →https://doi.org/10.1093/hr/uhad252openalex-snapshot
Phased gap-free genome assembly of octoploid cultivated strawberry illustrates the genetic and epigenetic divergence among subgenomes
inferredcites →https://doi.org/10.1093/nar/28.13.2571openalex-snapshot
The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNACys(GCA)
inferredcites →https://doi.org/10.1093/nar/gkn425openalex-snapshot
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
inferredcites →https://doi.org/10.1093/nar/gkr1090openalex-snapshot
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
inferredcites →https://doi.org/10.1093/nar/gks001openalex-snapshot
Summarizing and correcting the GC content bias in high-throughput sequencing
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025977openalex-snapshot
Analysis of plastid DNA-like sequences within the nuclear genomes of higher plants
inferredcites →https://doi.org/10.1098/rstb.1976.0044openalex-snapshot
Nuclear DNA amounts in angiosperms
inferredcites →https://doi.org/10.1098/rstb.1991.0120openalex-snapshot
Nuclear DNA amounts in angiosperms
inferredcites →https://doi.org/10.1101/103747openalex-snapshot
European Flint reference sequences complement the maize pan-genome
inferredcites →https://doi.org/10.1101/2024.05.18.594796openalex-snapshot
Telomere-to-Telomere Phased Genome Assembly Using HERRO-Corrected Simplex Nanopore Reads
inferredcites →https://doi.org/10.1101/gr.097261.109openalex-snapshot
De novo assembly of human genomes with massively parallel short read sequencing
inferredcites →https://doi.org/10.1101/gr.1251803openalex-snapshot
Estimating the Repeat Structure and Length of DNA Sequences Using ℓ-Tuples
inferredcites →https://doi.org/10.1101/gr.188573.114openalex-snapshot
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans
inferredcites →https://doi.org/10.1101/gr.213652.116openalex-snapshot
Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data
inferredcites →https://doi.org/10.1101/gr.220673.117openalex-snapshot
Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data
inferredcites →https://doi.org/10.1101/gr.244830.118openalex-snapshot
Recompleting the Caenorhabditis elegans genome
inferredcites →https://doi.org/10.1101/gr.3723405openalex-snapshot
The Arabidopsis genome: A foundation for plant research
inferredcites →https://doi.org/10.1105/tpc.18.00167openalex-snapshot
Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants
inferredcites →https://doi.org/10.1105/tpc.18.00287openalex-snapshot
APURINIC/APYRIMIDINIC ENDONUCLEASE2 and ZINC FINGER DNA 3′-PHOSPHOESTERASE Play Overlapping Roles in the Maintenance of Epigenome and Genome Stability
inferredcites →https://doi.org/10.1111/j.1365-313x.1994.00665.xopenalex-snapshot
A karyotype of the Arabidopsis thaliana genome derived from synaptonemal complex analysis at prophase I of meiosis
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04345.xopenalex-snapshot
Elongator subunit 2 is an accelerator of immune responses in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/jipb.12778openalex-snapshot
Critical function of DNA methyltransferase 1 in tomato development and regulation of the DNA methylome and transcriptome
inferredcites →https://doi.org/10.1111/nph.14856openalex-snapshot
WRINKLED 1 and ACYL‐COA:DIACYLGLYCEROL ACYLTRANSFERASE 1 regulate tocochromanol metabolism in Arabidopsis
inferredcites →https://doi.org/10.1111/tpj.13977openalex-snapshot
Nucleotide‐binding resistance gene signatures in sugar beet, insights from a new reference genome
inferredcites →https://doi.org/10.1126/science.277.5331.1453openalex-snapshot
The Complete Genome Sequence of Escherichia coli K-12
inferredcites →https://doi.org/10.1146/annurev.genet.33.1.479openalex-snapshot
Plant Retrotransposons
inferredcites →https://doi.org/10.1186/1471-2164-9-517openalex-snapshot
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
inferredcites →https://doi.org/10.1186/1475-2859-11-36openalex-snapshot
De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology
inferredcites →https://doi.org/10.1186/gb-2011-12-2-r18openalex-snapshot
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r33openalex-snapshot
Systematic biases in DNA copy number originate from isolation procedures
inferredcites →https://doi.org/10.1186/gb-2013-14-5-r51openalex-snapshot
Characterizing and measuring bias in sequence data
inferredcites →https://doi.org/10.1186/s12263-020-0659-1openalex-snapshot
Effects of excess sugars and lipids on the growth and development of Caenorhabditis elegans
inferredcites →https://doi.org/10.1186/s12859-015-0726-6openalex-snapshot
SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome
inferredcites →https://doi.org/10.1186/s12864-016-2523-7openalex-snapshot
Indica rice genome assembly, annotation and mining of blast disease resistance genes
inferredcites →https://doi.org/10.1186/s12864-018-5360-zopenalex-snapshot
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes
inferredcites →https://doi.org/10.1186/s12864-021-07877-8openalex-snapshot
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis
inferredcites →https://doi.org/10.1186/s12864-023-09823-2openalex-snapshot
Genomic characterization of a nematode tolerance locus in sugar beet
inferredcites →https://doi.org/10.1186/s12870-016-0805-5openalex-snapshot
Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris)
inferredcites →https://doi.org/10.1186/s12915-014-0087-zopenalex-snapshot
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
inferredcites →https://doi.org/10.1186/s13073-023-01183-6openalex-snapshot
Comprehensive de novo mutation discovery with HiFi long-read sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1005854openalex-snapshot
The Epigenomic Landscape of Prokaryotes
inferredcites →https://doi.org/10.1371/journal.pgen.1007807openalex-snapshot
Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay
inferredcites →https://doi.org/10.1371/journal.pone.0094077openalex-snapshot
Dissecting a Hidden Gene Duplication: The Arabidopsis thaliana SEC10 Locus
inferredcites →https://doi.org/10.1371/journal.pone.0164321openalex-snapshot
A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny
inferredcites →https://doi.org/10.1371/journal.pone.0216233openalex-snapshot
A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set
inferredcites →https://doi.org/10.1371/journal.ppat.1004437openalex-snapshot
Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples
inferredcites →https://doi.org/10.1534/g3.120.401028openalex-snapshot
Measuring Genome Sizes Using Read-Depth, k-mers, and Flow Cytometry: Methodological Comparisons in Beetles (Coleoptera)
inferredcites →https://doi.org/10.3389/fpls.2016.01662openalex-snapshot
A Detailed Analysis of the BR1 Locus Suggests a New Mechanism for Bolting after Winter in Sugar Beet (Beta vulgaris L.)
inferredcites →https://doi.org/10.3390/plants9020261openalex-snapshot
Mitochondrial DNA Repair in an Arabidopsis thaliana Uracil N-Glycosylase Mutant
inferredcites →https://doi.org/10.4230/lipics.cpm.2021.16openalex-snapshot
Compressed Weighted de Bruijn Graphs
inferredcites →https://doi.org/10.48550/arxiv.1609.05626openalex-snapshot
Kmerlight: fast and accurate k-mer abundance estimation
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41598-021-04264-xopenalex-snapshot
Genome survey sequencing and characterization of simple sequence repeat (SSR) markers in Platostoma palustre (Blume) A.J.Paton (Chinese mesona)
inferred← citeshttps://doi.org/10.1093/dnares/dsac033openalex-snapshot
A contiguous de novo genome assembly of sugar beet EL10 ( Beta vulgaris L.)
inferred← citeshttps://doi.org/10.1093/gigascience/giac027openalex-snapshot
A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
inferred← citeshttps://doi.org/10.1093/gigascience/giad005openalex-snapshot
Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
inferred← citeshttps://doi.org/10.1093/nar/gkac1115openalex-snapshot
Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes
inferred← citeshttps://doi.org/10.1101/2021.05.18.444645openalex-snapshot
ModEst - Precise estimation of genome size from NGS data
inferred← citeshttps://doi.org/10.1101/2022.05.13.491861openalex-snapshot
Genes ruler for genomes, Gnodes, measures assembly accuracy in animals and plants
inferred← citeshttps://doi.org/10.1101/2024.10.06.616888openalex-snapshot
Measuring DNA contents of animal and plant genomes with Gnodes, the long and short of it
inferred← citeshttps://doi.org/10.1101/2025.11.26.690794openalex-snapshot
Do DNA and cytometric measures agree on genome sizes?
inferred← citeshttps://doi.org/10.1111/1755-0998.13570openalex-snapshot
ModEst: Accurate estimation of genome size from next generation sequencing data
inferred← citeshttps://doi.org/10.1111/nph.16261openalex-snapshot
The Plant DNA C‐values database (release 7.1): an updated online repository of plant genome size data for comparative studies
inferred← citeshttps://doi.org/10.24072/pcjournal.128openalex-snapshot
A deep dive into genome assemblies of non-vertebrate animals
inferred← citeshttps://doi.org/10.3389/fpls.2024.1328966openalex-snapshot
LocoGSE, a sequence-based genome size estimator for plants
inferred← citeshttps://doi.org/10.3390/genes11030274openalex-snapshot
High Contiguity de novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing
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