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4q-D4Z4 chromatin architecture regulates the transcription of muscle atrophic genes in FSHD

https://doi.org/10.1101/623363
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/humu.21091openalex-snapshot
Common epigenetic changes of D4Z4 in contraction-dependent and contraction-independent FSHD
inferredcites →https://doi.org/10.1002/mus.20522openalex-snapshot
Facioscapulohumeral muscular dystrophy
inferredcites →https://doi.org/10.1002/mus.880181309openalex-snapshot
The FSHD-linked locus D4F104S1 (p13E-11) ON 4q35 has a homologue on 10qter
inferredcites →https://doi.org/10.1006/geno.1995.1166openalex-snapshot
The FSHD-Associated Repeat, D4Z4, Is a Member of a Dispersed Family of Homeobox-Containing Repeats, Subsets of Which Are Clustered on the Short Arms of the Acrocentric Chromosomes
inferredcites →https://doi.org/10.1007/978-1-4939-6380-5_19openalex-snapshot
Chromosome Conformation Capture in Primary Human Cells
inferredcites →https://doi.org/10.1007/978-1-59745-406-3_15openalex-snapshot
Multicolor 3D Fluorescence In Situ Hybridization for Imaging Interphase Chromosomes
inferredcites →https://doi.org/10.1007/s00415-003-1116-yopenalex-snapshot
Facioscapulohumeral muscular dystrophy
inferredcites →https://doi.org/10.1007/s00421-010-1617-1openalex-snapshot
Responses of muscle mass, strength and gene transcripts to long-term heat stress in healthy human subjects
inferredcites →https://doi.org/10.1016/j.bbadis.2014.05.021openalex-snapshot
Facioscapulohumeral muscular dystrophy
inferredcites →https://doi.org/10.1016/j.ceb.2014.09.002openalex-snapshot
Repetitive elements dynamics in cell identity programming, maintenance and disease
inferredcites →https://doi.org/10.1016/j.cell.2012.03.035openalex-snapshot
A Long ncRNA Links Copy Number Variation to a Polycomb/Trithorax Epigenetic Switch in FSHD Muscular Dystrophy
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.04.004openalex-snapshot
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
inferredcites →https://doi.org/10.1016/j.cell.2017.03.024openalex-snapshot
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
inferredcites →https://doi.org/10.1016/j.cell.2017.03.026openalex-snapshot
Can We Just Say: Transcription Second?
inferredcites →https://doi.org/10.1016/j.cell.2018.05.007openalex-snapshot
SMCHD1 Merges Chromosome Compartments and Assists Formation of Super-Structures on the Inactive X
inferredcites →https://doi.org/10.1016/j.cell.2019.01.020openalex-snapshot
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization
inferredcites →https://doi.org/10.1016/j.devcel.2011.11.013openalex-snapshot
DUX4 Activates Germline Genes, Retroelements, and Immune Mediators: Implications for Facioscapulohumeral Dystrophy
inferredcites →https://doi.org/10.1016/j.gde.2015.08.007openalex-snapshot
Genetic and epigenetic contributors to FSHD
inferredcites →https://doi.org/10.1016/j.gde.2016.01.002openalex-snapshot
The three-dimensional cancer genome
inferredcites →https://doi.org/10.1016/j.mod.2015.07.006openalex-snapshot
Tetrapod axial evolution and developmental constraints; Empirical underpinning by a mouse model
inferredcites →https://doi.org/10.1016/j.molmed.2016.10.004openalex-snapshot
Genomic Alterations of Non-Coding Regions Underlie Human Cancer: Lessons from T-ALL
inferredcites →https://doi.org/10.1016/j.tig.2016.01.003openalex-snapshot
Breaking TADs: How Alterations of Chromatin Domains Result in Disease
inferredcites →https://doi.org/10.1016/j.ygeno.2006.05.001openalex-snapshot
The boundary of macaque rDNA is constituted by low-copy sequences conserved during evolution
inferredcites →https://doi.org/10.1016/j.ygeno.2017.01.005openalex-snapshot
Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis
inferredcites →https://doi.org/10.1016/j.ymeth.2012.04.009openalex-snapshot
Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation
inferredcites →https://doi.org/10.1016/s0092-8674(02)00826-7openalex-snapshot
Inappropriate Gene Activation in FSHD
inferredcites →https://doi.org/10.1016/s0092-8674(04)00400-3openalex-snapshot
Foxo Transcription Factors Induce the Atrophy-Related Ubiquitin Ligase Atrogin-1 and Cause Skeletal Muscle Atrophy
inferredcites →https://doi.org/10.1016/s0378-1119(99)00267-xopenalex-snapshot
Nucleotide sequence of the partially deleted D4Z4 locus in a patient with FSHD identifies a putative gene within each 3.3 kb element
inferredcites →https://doi.org/10.1038/emboj.2008.201openalex-snapshot
An isogenetic myoblast expression screen identifies DUX4‐mediated FSHD‐associated molecular pathologies
inferredcites →https://doi.org/10.1038/nature12753openalex-snapshot
Topology of mammalian developmental enhancers and their regulatory landscapes
inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature18589openalex-snapshot
Structural organization of the inactive X chromosome in the mouse
inferredcites →https://doi.org/10.1038/nbt.2450openalex-snapshot
Differential analysis of gene regulation at transcript resolution with RNA-seq
inferredcites →https://doi.org/10.1038/ng.2454openalex-snapshot
Digenic inheritance of an SMCHD1 mutation and an FSHD-permissive D4Z4 allele causes facioscapulohumeral muscular dystrophy type 2
inferredcites →https://doi.org/10.1038/ng.3844openalex-snapshot
Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons
inferredcites →https://doi.org/10.1038/ng0592-137openalex-snapshot
A novel GC–rich human macrosatellite VNTR in Xq24 is differentially methylated on active and inactive X chromosomes
inferredcites →https://doi.org/10.1038/ng1262openalex-snapshot
Hypomethylation of D4Z4 in 4q-linked and non-4q-linked facioscapulohumeral muscular dystrophy
inferredcites →https://doi.org/10.1038/ng999openalex-snapshot
Facioscapulohumeral muscular dystrophy is uniquely associated with one of the two variants of the 4q subtelomere
inferredcites →https://doi.org/10.1038/nmeth.1906openalex-snapshot
ChromHMM: automating chromatin-state discovery and characterization
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrg1674openalex-snapshot
Synergy between sequence and size in Large-scale genomics
inferredcites →https://doi.org/10.1038/nrm.2016.138openalex-snapshot
Regulation of disease-associated gene expression in the 3D genome
inferredcites →https://doi.org/10.1038/nsmb.3392openalex-snapshot
A cytosolic Ezh1 isoform modulates a PRC2–Ezh1 epigenetic adaptive response in postmitotic cells
inferredcites →https://doi.org/10.1038/s41467-018-05945-4openalex-snapshot
Loss of PRC1 induces higher-order opening of Hox loci independently of transcription during Drosophila embryogenesis
inferredcites →https://doi.org/10.1038/s41586-019-0949-1openalex-snapshot
Multiplex chromatin interactions with single-molecule precision
inferredcites →https://doi.org/10.1038/s41594-018-0111-zopenalex-snapshot
Smchd1 regulates long-range chromatin interactions on the inactive X chromosome and at Hox clusters
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.0511235103openalex-snapshot
Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts
inferredcites →https://doi.org/10.1073/pnas.0708659104openalex-snapshot
DUX4 , a candidate gene of facioscapulohumeral muscular dystrophy, encodes a transcriptional activator of PITX1
inferredcites →https://doi.org/10.1073/pnas.1609643113openalex-snapshot
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
inferredcites →https://doi.org/10.1073/pnas.251541198openalex-snapshot
Atrogin-1, a muscle-specific F-box protein highly expressed during muscle atrophy
inferredcites →https://doi.org/10.1083/jcb.200403128openalex-snapshot
The 4q subtelomere harboring the FSHD locus is specifically anchored with peripheral heterochromatin unlike most human telomeres
inferredcites →https://doi.org/10.1083/jcb.201007028openalex-snapshot
FSHD: copy number variations on the theme of muscular dystrophy
inferredcites →https://doi.org/10.1086/521986openalex-snapshot
Specific Sequence Variations within the 4q35 Region Are Associated with Facioscapulohumeral Muscular Dystrophy
inferredcites →https://doi.org/10.1093/bioinformatics/btp101openalex-snapshot
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/hmg/2.12.2037openalex-snapshot
FSHD associated DNA rearrangements are due to deletions of integral copies of a 3.2 kb tandemly repeated unit
inferredcites →https://doi.org/10.1093/hmg/3.8.1287openalex-snapshot
Analysis of the tandem repeat locus D4Z4 associated with facioscapulohumeral muscular dystropothhy
inferredcites →https://doi.org/10.1093/hmg/ddg323openalex-snapshot
Testing the position-effect variegation hypothesis for facioscapulohumeral muscular dystrophy by analysis of histone modification and gene expression in subtelomeric 4q
inferredcites →https://doi.org/10.1093/hmg/ddt272openalex-snapshot
Dysregulation of 4q35- and muscle-specific genes in fetuses with a short D4Z4 array linked to facio-scapulo-humeral dystrophy
inferredcites →https://doi.org/10.1093/hmg/ddt314openalex-snapshot
Wnt/β-catenin signaling suppresses DUX4 expression and prevents apoptosis of FSHD muscle cells
inferredcites →https://doi.org/10.1093/hmg/ddu251openalex-snapshot
DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle
inferredcites →https://doi.org/10.1093/hmg/ddv315openalex-snapshot
Endogenous DUX4 expression in FSHD myotubes is sufficient to cause cell death and disrupts RNA splicing and cell migration pathways
inferredcites →https://doi.org/10.1093/nar/gkw568openalex-snapshot
Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions
inferredcites →https://doi.org/10.1096/fj.03-0610comopenalex-snapshot
Multiple types of skeletal muscle atrophy involve a common program of changes in gene expression
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1101/gr.186643.114openalex-snapshot
Characterization and dynamics of pericentromere-associated domains in mice
inferredcites →https://doi.org/10.1101/gr.190660.115openalex-snapshot
SORBS2transcription is activated by telomere position effect–over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy
inferredcites →https://doi.org/10.1126/science.1189044openalex-snapshot
A Unifying Genetic Model for Facioscapulohumeral Muscular Dystrophy
inferredcites →https://doi.org/10.1128/mcb.00149-14openalex-snapshot
Myogenic Enhancers Regulate Expression of the Facioscapulohumeral Muscular Dystrophy-Associated DUX4 Gene
inferredcites →https://doi.org/10.1146/annurev-cellbio-101512-122317openalex-snapshot
Something Silent This Way Forms: The Functional Organization of the Repressive Nuclear Compartment
inferredcites →https://doi.org/10.1152/ajpendo.00204.2014openalex-snapshot
Skeletal muscle atrophy and the E3 ubiquitin ligases MuRF1 and MAFbx/atrogin-1
inferredcites →https://doi.org/10.1152/japplphysiol.00444.2010openalex-snapshot
Forty-eight hours of unloading and 24 h of reloading lead to changes in global gene expression patterns related to ubiquitination and oxidative stress in humans
inferredcites →https://doi.org/10.1155/2012/256892openalex-snapshot
Epigenetic Alterations in Muscular Disorders
inferredcites →https://doi.org/10.1159/000472291openalex-snapshot
Physical Mapping Evidence for a Duplicated Region on Chromosome 10qter Showing High Homology with the Facioscapulohumeral Muscular Dystrophy Locus on Chromosome 4qter
inferredcites →https://doi.org/10.1186/1471-2148-7-39openalex-snapshot
Evolutionary genomic remodelling of the human 4q subtelomere (4q35.2)
inferredcites →https://doi.org/10.1186/1741-7007-7-41openalex-snapshot
Remodeling of the chromatin structure of the facioscapulohumeral muscular dystrophy (FSHD) locus and upregulation of FSHD-related gene 1 (FRG1) expression during human myogenic differentiation
inferredcites →https://doi.org/10.1186/s13059-015-0728-8openalex-snapshot
Bipartite structure of the inactive mouse X chromosome
inferredcites →https://doi.org/10.1212/con.0000000000000399openalex-snapshot
Facioscapulohumeral Muscular Dystrophy
inferredcites →https://doi.org/10.1212/wnl.43.2.345openalex-snapshot
Extreme variability of expression in monozygotic twins with FSH muscular dystrophy
inferredcites →https://doi.org/10.1371/journal.pbio.1001773openalex-snapshot
Conservation and Divergence of Regulatory Strategies at Hox Loci and the Origin of Tetrapod Digits
inferredcites →https://doi.org/10.1371/journal.pcbi.1004780openalex-snapshot
4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments
inferredcites →https://doi.org/10.1371/journal.pgen.1000559openalex-snapshot
Specific Loss of Histone H3 Lysine 9 Trimethylation and HP1γ/Cohesin Binding at D4Z4 Repeats Is Associated with Facioscapulohumeral Dystrophy (FSHD)
inferredcites →https://doi.org/10.1371/journal.pgen.1001181openalex-snapshot
Facioscapulohumeral Dystrophy: Incomplete Suppression of a Retrotransposed Gene
inferredcites →https://doi.org/10.1371/journal.pgen.1003947openalex-snapshot
DUX4 Binding to Retroelements Creates Promoters That Are Active in FSHD Muscle and Testis
inferredcites →https://doi.org/10.2144/03354rr02openalex-snapshot
Parameters influencing high-efficiency transfection of bacterial artificial chromosomes into cultured mammalian cells
inferredcites →https://doi.org/10.2217/epi-2016-0111openalex-snapshot
Disruption of the 3D Cancer Genome Blueprint
inferredcites →https://doi.org/10.2217/epi.10.8openalex-snapshot
In Junk We Trust: Repetitive Dna, Epigenetics and Facioscapulohumeral Muscular Dystrophy
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