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Genic evidence that gnetophytes are sister to all other seed plants
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-94-007-2920-9openalex-snapshot
Genomics of Chloroplasts and Mitochondria
inferredcites →https://doi.org/10.1007/978-94-007-2920-9_13openalex-snapshot
Land Plant RNA Editing or: Don’t Be Fooled by Plant Organellar DNA Sequences
inferredcites →https://doi.org/10.1007/bf02861082openalex-snapshot
Seed plant phylogeny and the origin of angiosperms: An experimental cladistic approach
inferredcites →https://doi.org/10.1007/s00239-001-0042-9openalex-snapshot
The Evolution of Gymnosperms Redrawn by Phytochrome Genes: The Gnetatae Appear at the Base of the Gymnosperms
inferredcites →https://doi.org/10.1007/s00294-004-0522-8openalex-snapshot
The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective
inferredcites →https://doi.org/10.1016/j.ympev.2008.09.009openalex-snapshot
Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
inferredcites →https://doi.org/10.1016/j.ympev.2009.09.011openalex-snapshot
Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms
inferredcites →https://doi.org/10.1016/j.ympev.2013.05.029openalex-snapshot
Identifying localized biases in large datasets: A case study using the avian tree of life
inferredcites →https://doi.org/10.1016/j.ympev.2014.02.005openalex-snapshot
Evolution and biogeography of gymnosperms
inferredcites →https://doi.org/10.1038/s41477-017-0097-2openalex-snapshot
A genome for gnetophytes and early evolution of seed plants
inferredcites →https://doi.org/10.1038/s41559-017-0126openalex-snapshot
Contentious relationships in phylogenomic studies can be driven by a handful of genes
inferredcites →https://doi.org/10.1046/j.1462-2920.2002.00362.xopenalex-snapshot
A fluorimetric method for the estimation of G + C mol% content in microorganisms by thermal denaturation temperature
inferredcites →https://doi.org/10.1073/pnas.0900233106openalex-snapshot
Evidence for an ancient adaptive episode of convergent molecular evolution
inferredcites →https://doi.org/10.1073/pnas.1323926111openalex-snapshot
Phylotranscriptomic analysis of the origin and early diversification of land plants
inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1086/338321openalex-snapshot
Seed Plant Relationships and the Systematic Position of Gnetales Based on Nuclear and Chloroplast DNA: Conflicting Data, Rooting Problems, and the Monophyly of Conifers
inferredcites →https://doi.org/10.1093/bioinformatics/bti191openalex-snapshot
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot
ProtTest: selection of best-fit models of protein evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot
phangorn: phylogenetic analysis in R
inferredcites →https://doi.org/10.1093/gbe/evt032openalex-snapshot
Missing Data and Influential Sites: Choice of Sites for Phylogenetic Analysis Can Be As Important As Taxon Sampling and Model Choice
inferredcites →https://doi.org/10.1093/gbe/evx070openalex-snapshot
Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants
inferredcites →https://doi.org/10.1093/molbev/msn030openalex-snapshot
Influence Function for Robust Phylogenetic Reconstructions
inferredcites →https://doi.org/10.1093/molbev/msq170openalex-snapshot
The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gki198openalex-snapshot
MAFFT version 5: improvement in accuracy of multiple sequence alignment
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026290openalex-snapshot
Multigene Phylogeny of Land Plants with Special Reference to Bryophytes and the Earliest Land Plants
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026357openalex-snapshot
Error, Bias, and Long-Branch Attraction in Data for Two Chloroplast Photosystem Genes in Seed Plants
inferredcites →https://doi.org/10.1093/sysbio/syt108openalex-snapshot
Another Look at the Root of the Angiosperms Reveals a Familiar Tale
inferredcites →https://doi.org/10.1093/sysbio/syu049openalex-snapshot
Mitochondrial Phylogenomics of Early Land Plants: Mitigating the Effects of Saturation, Compositional Heterogeneity, and Codon-Usage Bias
inferredcites →https://doi.org/10.1093/sysbio/syw101openalex-snapshot
Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1111/cla.12170openalex-snapshot
Resolution of a concatenation/coalescence kerfuffle: partitioned coalescence support and a robust family‐level tree for Mammalia
inferredcites →https://doi.org/10.1111/j.1095-8339.1996.tb00476.xopenalex-snapshot
Wood, bark and stem anatomy of New World species of Gnetum
inferredcites →https://doi.org/10.1111/j.1759-6831.2010.00097.xopenalex-snapshot
Angiosperm phylogeny inferred from sequences of four mitochondrial genes
inferredcites →https://doi.org/10.1111/jse.12190openalex-snapshot
The Gnetales: Recent insights on their morphology, reproductive biology, chromosome numbers, biogeography, and divergence times
inferredcites →https://doi.org/10.1111/jse.12219openalex-snapshot
Tree of life for the genera of Chinese vascular plants
inferredcites →https://doi.org/10.1111/jse.12233openalex-snapshot
Relative benefits of amino‐acid, codon, degeneracy, DNA, and purine‐pyrimidine character coding for phylogenetic analyses of exons
inferredcites →https://doi.org/10.1111/nph.14135openalex-snapshot
Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns
inferredcites →https://doi.org/10.1126/science.247.4945.951openalex-snapshot
Double Fertilization in Ephedra, a Nonflowering Seed Plant: Its Bearing on the Origin of Angiosperms
inferredcites →https://doi.org/10.1139/b08-062openalex-snapshot
Inference of higher-order conifer relationships from a multi-locus plastid data setThis paper is one of a selection of papers published in the Special Issue on Systematics Research.
inferredcites →https://doi.org/10.1146/annurev-earth-042711-105313openalex-snapshot
Molecular and Fossil Evidence on the Origin of Angiosperms
inferredcites →https://doi.org/10.1186/1471-2148-14-23openalex-snapshot
From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
inferredcites →https://doi.org/10.1186/1471-2148-8-130openalex-snapshot
The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
inferredcites →https://doi.org/10.1186/1471-2164-13-1openalex-snapshot
Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
inferredcites →https://doi.org/10.1186/1471-2164-13-s3-s1openalex-snapshot
The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage
inferredcites →https://doi.org/10.1371/journal.pgen.1002411openalex-snapshot
A Functional Phylogenomic View of the Seed Plants
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
inferredcites →https://doi.org/10.2307/2399221openalex-snapshot
Phylogenetic Analysis of Seed Plants and the Origin of Angiosperms
inferredcites →https://doi.org/10.2307/2399899openalex-snapshot
Integration of Morphological and Ribosomal RNA Data on the Origin of Angiosperms
inferredcites →https://doi.org/10.2307/2666635openalex-snapshot
The Mostly Male Theory of Flower Evolutionary Origins: From Genes to Fossils
inferredcites →https://doi.org/10.3732/ajb.0800178openalex-snapshot
Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data
inferredcites →https://doi.org/10.3732/ajb.91.10.1599openalex-snapshot
Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life
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