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KPHMMER: Hidden Markov Model generator for detecting KEGG PATHWAY-specific genes

https://doi.org/10.1101/636290
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cpbi.40openalex-snapshot
The HMMER Web Server for Protein Sequence Similarity Search
inferredcites →https://doi.org/10.1021/ci800213gopenalex-snapshot
Eliciting Possible Reaction Equations and Metabolic Pathways Involving Orphan Metabolites
inferredcites →https://doi.org/10.1073/pnas.211433198openalex-snapshot
Genome sequence of an industrial microorganism Streptomyces avermitilis : Deducing the ability of producing secondary metabolites
inferredcites →https://doi.org/10.1093/dnares/dsn027openalex-snapshot
MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gki458openalex-snapshot
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot
The Pfam protein families database: towards a more sustainable future
inferredcites →https://doi.org/10.1093/nar/gkw1092openalex-snapshot
KEGG: new perspectives on genomes, pathways, diseases and drugs
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.