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Characterizing the serotonin biosynthesis pathway upon aphid infestation in Setaria viridis leaves

https://doi.org/10.1101/642041

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/meth.2001.1262openalex-snapshot

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

inferredcites →https://doi.org/10.1007/978-3-319-45105-3openalex-snapshot

Genetics and Genomics of Setaria

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Agrobacterium tumefaciens-Mediated Transformation of Setaria viridis

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Damage effects of cereal aphids in wheat

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Characterization of tryptamine 5-hydroxylase and serotonin synthesis in rice plants

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Induction of serotonin biosynthesis is uncoupled from the coordinated induction of tryptophan biosynthesis in pepper fruits (Capsicum annuum) upon pathogen infection

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Brevicoryne brassicae aphids interfere with transcriptome responses of Arabidopsis thaliana to feeding by Plutella xylostella caterpillars in a density-dependent manner

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Methyl Jasmonate Application Induces Increased Densities of Glandular Trichomes on Tomato, Lycopersicon esculentum

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Arabidopsis thaliana Plants with Different Levels of Aliphatic- and Indolyl-Glucosinolates Affect Host Selection and Performance of Bemisia tabaci

inferredcites →https://doi.org/10.1007/s11056-005-2719-1openalex-snapshot

Over-expression of Tryptophan Decarboxylase Gene in Poplar and its Possible Role in Resistance Against Malacosoma disstria

inferredcites →https://doi.org/10.1007/s11105-015-0909-3openalex-snapshot

Molecular Cloning and Characterization of Two Genes Encoding Tryptophan Decarboxylase from Aegilops variabilis with Resistance to the Cereal Cyst Nematode (Heterodera avenae) and Root-Knot Nematode (Meloidogyne naasi)

inferredcites →https://doi.org/10.1016/0022-1910(92)90037-eopenalex-snapshot

A test of the hypotheses that nitrogen is upgraded and recycled in an aphid (Acyrthosiphon pisum) symbiosis

inferredcites →https://doi.org/10.1016/j.biotechadv.2016.10.002openalex-snapshot

Serotonin: An ancient molecule and an important regulator of plant processes

inferredcites →https://doi.org/10.1016/j.jbiotec.2005.12.020openalex-snapshot

Plant expression of chicken secretory antibodies derived from combinatorial libraries

inferredcites →https://doi.org/10.1016/j.phytochem.2004.09.006openalex-snapshot

Accumulation of HDMBOA-Glc is induced by biotic stresses prior to the release of MBOA in maize leaves

inferredcites →https://doi.org/10.1016/j.phytochem.2005.01.024openalex-snapshot

Evolution of the indole alkaloid biosynthesis in the genus Hordeum: Distribution of gramine and DIBOA and isolation of the benzoxazinoid biosynthesis genes from Hordeum lechleri

inferredcites →https://doi.org/10.1016/j.phytochem.2010.11.001openalex-snapshot

Probing the role of tryptophan-derived secondary metabolism in defense responses against Bipolaris oryzae infection in rice leaves by a suicide substrate of tryptophan decarboxylase

inferredcites →https://doi.org/10.1016/j.plantsci.2016.06.011openalex-snapshot

Effects of abiotic stress on physiological plasticity and water use of Setaria viridis (L.)

inferredcites →https://doi.org/10.1016/j.tplants.2012.01.003openalex-snapshot

Role of phytohormones in insect-specific plant reactions

inferredcites →https://doi.org/10.1016/s0031-9422(00)80376-3openalex-snapshot

Effects of indole alkaloids from gramineae on aphids

inferredcites →https://doi.org/10.1021/ac051437yopenalex-snapshot

XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification

inferredcites →https://doi.org/10.1021/ac202450gopenalex-snapshot

CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets

inferredcites →https://doi.org/10.1021/jf8034034openalex-snapshot

Hydroxamic Acids Derived from 2-Hydroxy-2 H -1,4-Benzoxazin-3(4 H )-one: Key Defense Chemicals of Cereals

inferredcites →https://doi.org/10.1023/a:1022983529555openalex-snapshot

Tryptamine-Induced Resistance in Tryptophan Decarboxylase Transgenic Poplar and Tobacco Plants Against Their Specific Herbivores

inferredcites →https://doi.org/10.1038/nbt.2196openalex-snapshot

Reference genome sequence of the model plant Setaria

inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot

HISAT: a fast spliced aligner with low memory requirements

inferredcites →https://doi.org/10.1038/nplants.2015.62openalex-snapshot

Model grasses hold key to crop improvement

inferredcites →https://doi.org/10.1038/s41477-018-0152-7openalex-snapshot

Resistance of rice to insect pests mediated by suppression of serotonin biosynthesis

inferredcites →https://doi.org/10.1038/srep20612openalex-snapshot

Individual Differences in Rhythmic Cortical Entrainment Correlate with Predictive Behavior in Sensorimotor Synchronization

inferredcites →https://doi.org/10.1038/srep28348openalex-snapshot

Selection of reliable reference genes for RT-qPCR analysis during developmental stages and abiotic stress in Setaria viridis

inferredcites →https://doi.org/10.1038/srep30059openalex-snapshot

Serotonin biosynthesis as a predictive marker of serotonin pharmacodynamics and disease-induced dysregulation

inferredcites →https://doi.org/10.1038/srep44729openalex-snapshot

Simulated herbivory in chickpea causes rapid changes in defense pathways and hormonal transcription networks of JA/ethylene/GA/auxin within minutes of wounding

inferredcites →https://doi.org/10.1051/agro/2009025openalex-snapshot

Defence mechanisms of Brassicaceae: implications for plant-insect interactions and potential for integrated pest management. A review

inferredcites →https://doi.org/10.1074/jbc.m109.091371openalex-snapshot

Sekiguchi Lesion Gene Encodes a Cytochrome P450 Monooxygenase That Catalyzes Conversion of Tryptamine to Serotonin in Rice

inferredcites →https://doi.org/10.1080/09168451.2016.1256758openalex-snapshot

Distribution of the tryptophan pathway-derived defensive secondary metabolites gramine and benzoxazinones in Poaceae

inferredcites →https://doi.org/10.1080/09168451.2017.1290520openalex-snapshot

Induced accumulation of tyramine, serotonin, and related amines in response to Bipolaris sorokiniana infection in barley

inferredcites →https://doi.org/10.1080/17429140802567173openalex-snapshot

Aphid-plant interactions: a review

inferredcites →https://doi.org/10.1093/aesa/84.5.549openalex-snapshot

Stylet Penetration and Feeding Sites of Rhopalosiphum maidis (Homoptera: Aphididae) on Two Growth Stages of Maize

inferredcites →https://doi.org/10.1093/aesa/90.5.521openalex-snapshot

Arthropod Transmission of Plant Viruses: a New Synthesis

inferredcites →https://doi.org/10.1093/biolinnean/blx020openalex-snapshot

Reconstructing the macroevolutionary patterns of aphids (Hemiptera: Aphididae) using nuclear and mitochondrial DNA sequences

inferredcites →https://doi.org/10.1093/ee/18.3.388openalex-snapshot

Development and Reproduction of the English Grain Aphid (Homoptera: Aphididae) on Wheat Cultivars Infected with Barley Yellow Dwarf Virus

inferredcites →https://doi.org/10.1093/jxb/err096openalex-snapshot

Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses

inferredcites →https://doi.org/10.1093/jxb/erx274openalex-snapshot

Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding

inferredcites →https://doi.org/10.1093/nar/gkp356openalex-snapshot

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

inferredcites →https://doi.org/10.1093/pcp/pcy064openalex-snapshot

Beyond Defense: Multiple Functions of Benzoxazinoids in Maize Metabolism

inferredcites →https://doi.org/10.1101/pdb.prot5652openalex-snapshot

High-Throughput Illumina Strand-Specific RNA Sequencing Library Preparation

inferredcites →https://doi.org/10.1104/pp.103.026294openalex-snapshot

Synthesis of the Arabidopsis Bifunctional Lysine-Ketoglutarate Reductase/Saccharopine Dehydrogenase Enzyme of Lysine Catabolism Is Concertedly Regulated by Metabolic and Stress-Associated Signals

inferredcites →https://doi.org/10.1104/pp.109.138552openalex-snapshot

Senescence-Induced Serotonin Biosynthesis and Its Role in Delaying Senescence in Rice Leaves

inferredcites →https://doi.org/10.1104/pp.109.145169openalex-snapshot

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

inferredcites →https://doi.org/10.1104/pp.15.01039openalex-snapshot

Dynamic maize responses to aphid feeding are revealed by a time series of transcriptomic and metabolomic assays

inferredcites →https://doi.org/10.1104/pp.15.01405openalex-snapshot

Alteration of plant primary metabolism in response to insect herbivory

inferredcites →https://doi.org/10.1104/pp.16.00010openalex-snapshot

Foxtail Mosaic Virus -Induced Gene Silencing in Monocot Plants

inferredcites →https://doi.org/10.1105/tpc.110.075309openalex-snapshot

Setaria viridis: A Model for C4 Photosynthesis

inferredcites →https://doi.org/10.1105/tpc.113.250110openalex-snapshot

Blue Light Checkpoint: How Blue Light Controls the Onset of Cell Division in Diatoms

inferredcites →https://doi.org/10.1105/tpc.16.00065openalex-snapshot

Biosynthesis of 8-O-methylated benzoxazinoid defense compounds in maize

inferredcites →https://doi.org/10.1105/tpc.17.00009openalex-snapshot

A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants

inferredcites →https://doi.org/10.1111/j.1365-3040.2011.02399.xopenalex-snapshot

Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03441.xopenalex-snapshot

The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production

inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04740.xopenalex-snapshot

Induction and detoxification of maize 1,4‐benzoxazin‐3‐ones by insect herbivores

inferredcites →https://doi.org/10.1111/j.1469-8137.1994.tb02968.xopenalex-snapshot

Secondary metabolites in plant defence mechanisms

inferredcites →https://doi.org/10.1111/jse.12150openalex-snapshot

A worldwide phylogenetic classification of the Poaceae (Gramineae)

inferredcites →https://doi.org/10.1111/mec.12907openalex-snapshot

Population genetics of Setaria viridis, a new model system

inferredcites →https://doi.org/10.1111/plb.12490openalex-snapshot

Plant‐mediated interactions between two herbivores differentially affect a subsequently arriving third herbivore in populations of wild cabbage

inferredcites →https://doi.org/10.1111/tpj.13083openalex-snapshot

Serotonin attenuates biotic stress and leads to lesion browning caused by a hypersensitive response to Magnaporthe oryzae penetration in rice

inferredcites →https://doi.org/10.1111/tpj.13148openalex-snapshot

Spike‐dip transformation of Setaria viridis

inferredcites →https://doi.org/10.1146/annurev.phyto.44.070505.143425openalex-snapshot

Significance of Inducible Defense-related Proteins in Infected Plants

inferredcites →https://doi.org/10.1186/1746-4811-8-41openalex-snapshot

A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters

inferredcites →https://doi.org/10.1186/1939-8433-6-15openalex-snapshot

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

inferredcites →https://doi.org/10.1186/s12864-016-3376-9openalex-snapshot

Environmental and genetic effects on tomato seed metabolic balance and its association with germination vigor

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1371/journal.pone.0208103openalex-snapshot

Cereal aphids differently affect benzoxazinoid levels in durum wheat

inferredcites →https://doi.org/10.14800/nt.1538openalex-snapshot

Beyond a neurotransmitter: The role of serotonin in plants

inferredcites →https://doi.org/10.3389/fpls.2014.00565openalex-snapshot

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores

inferredcites →https://doi.org/10.3389/fpls.2015.00157openalex-snapshot

Genetic diversity and genomic resources available for the small millet crops to accelerate a New Green Revolution

inferredcites →https://doi.org/10.3389/fpls.2015.00538openalex-snapshot

Phenylalanine and tyrosine levels are rate-limiting factors in production of health promoting metabolites in Vitis vinifera cv. Gamay Red cell suspension

inferredcites →https://doi.org/10.3389/fpls.2016.00002openalex-snapshot

Enforced Clonality Confers a Fitness Advantage

inferredcites →https://doi.org/10.3389/fpls.2016.01885openalex-snapshot

Setaria: A Food Crop and Translational Research Model for C4 Grasses

inferredcites →https://doi.org/10.3389/fpls.2018.00205openalex-snapshot

Foxtail Millet [Setaria italica (L.) Beauv.] Grown under Low Nitrogen Shows a Smaller Root System, Enhanced Biomass Accumulation, and Nitrate Transporter Expression

inferredcites →https://doi.org/10.3389/fpls.2018.00719openalex-snapshot

Domestication and Improvement in the Model C4 Grass, Setaria

inferredcites →https://doi.org/10.3389/fpls.2018.01297openalex-snapshot

The Tryptophan decarboxylase 1 Gene From Aegilops variabilis No.1 Regulate the Resistance Against Cereal Cyst Nematode by Altering the Downstream Secondary Metabolite Contents Rather Than Auxin Synthesis

inferredcites →https://doi.org/10.3389/fpls.2018.01309openalex-snapshot

A Dynamic Co-expression Map of Early Inflorescence Development in Setaria viridis Provides a Resource for Gene Discovery and Comparative Genomics

inferredcites →https://doi.org/10.3390/agronomy8080143openalex-snapshot

Plant Protection by Benzoxazinoids—Recent Insights into Biosynthesis and Function

inferredcites →https://doi.org/10.4161/psb.26779openalex-snapshot

Near-isogenic lines for measuring phenotypic effects of DIMBOA-Glc methyltransferase activity in maize

inferredcites →https://doi.org/10.4161/psb.3.6.5401openalex-snapshot

Enzymatic features of serotonin biosynthetic enzymes and serotonin biosynthesis in plants

inferredcites →https://doi.org/10.4161/psb.3.9.6456openalex-snapshot

Induction of serotonin accumulation by feeding of rice striped stem borer in rice leaves

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00442-021-04902-1openalex-snapshot

Plant silicon application alters leaf alkaloid concentrations and impacts parasitoids more adversely than their aphid hosts

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2021.11.144openalex-snapshot

Silencing of cytochrome P450 gene CYP321A1 effects tannin detoxification and metabolism in Spodoptera litura

inferred← citeshttps://doi.org/10.1038/s41587-020-0681-2openalex-snapshot

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

inferred← citeshttps://doi.org/10.1038/s41598-025-86191-9openalex-snapshot

Non-targeted metabolomics reveals fatty acid and associated pathways driving resistance to whitefly and tomato leafminer in wild tomato accessions

inferred← citeshttps://doi.org/10.1080/15592324.2020.1737450openalex-snapshot

New insights on neurotransmitters signaling mechanisms in plants

inferred← citeshttps://doi.org/10.1093/jxb/erab220openalex-snapshot

The case of tryptamine and serotonin in plants: a mysterious precursor for an illustrious metabolite

inferred← citeshttps://doi.org/10.1101/744557openalex-snapshot

The Setaria viridis genome and diversity panel enables discovery of a novel domestication gene

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