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Software Toolkit for Fast High-Resolution TMS Modeling

https://doi.org/10.1101/643346
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-030-21293-3_1openalex-snapshot
SimNIBS 2.1: A Comprehensive Pipeline for Individualized Electric Field Modelling for Transcranial Brain Stimulation
inferredcites →https://doi.org/10.1007/978-3-642-23099-8openalex-snapshot
Automated Solution of Differential Equations by the Finite Element Method: The FEniCS Book
inferredcites →https://doi.org/10.1016/0021-9991(85)90002-6openalex-snapshot
Rapid solution of integral equations of classical potential theory
inferredcites →https://doi.org/10.1016/0021-9991(87)90140-9openalex-snapshot
A fast algorithm for particle simulations
inferredcites →https://doi.org/10.1016/j.brs.2012.02.005openalex-snapshot
Electric field depth–focality tradeoff in transcranial magnetic stimulation: Simulation comparison of 50 coil designs
inferredcites →https://doi.org/10.1016/j.brs.2017.04.001openalex-snapshot
Coil optimisation for transcranial magnetic stimulation in realistic head geometry
inferredcites →https://doi.org/10.1016/j.brs.2017.09.011openalex-snapshot
Where and what TMS activates: Experiments and modeling
inferredcites →https://doi.org/10.1016/j.brs.2017.12.008openalex-snapshot
Rigor and reproducibility in research with transcranial electrical stimulation: An NIMH-sponsored workshop
inferredcites →https://doi.org/10.1016/j.brs.2019.09.015openalex-snapshot
Conditions for numerically accurate TMS electric field simulation
inferredcites →https://doi.org/10.1016/j.clinph.2008.07.248openalex-snapshot
Elucidating the mechanisms and loci of neuronal excitation by transcranial magnetic stimulation using a finite element model of a cortical sulcus
inferredcites →https://doi.org/10.1016/j.clinph.2010.09.022openalex-snapshot
Determining which mechanisms lead to activation in the motor cortex: A modeling study of transcranial magnetic stimulation using realistic stimulus waveforms and sulcal geometry
inferredcites →https://doi.org/10.1016/j.clinph.2013.04.019openalex-snapshot
Comparison of spherical and realistically shaped boundary element head models for transcranial magnetic stimulation navigation
inferredcites →https://doi.org/10.1016/j.clinph.2018.04.749openalex-snapshot
Impact of non-brain anatomy and coil orientation on inter- and intra-subject variability in TMS at midline
inferredcites →https://doi.org/10.1016/j.cmpb.2007.09.004openalex-snapshot
A Matlab library for solving quasi-static volume conduction problems using the boundary element method
inferredcites →https://doi.org/10.1016/j.crhy.2018.02.002openalex-snapshot
Conforming discretizations of boundary element solutions to the electroencephalography forward problem
inferredcites →https://doi.org/10.1016/j.neuroimage.2012.01.021openalex-snapshot
FreeSurfer
inferredcites →https://doi.org/10.1016/j.neuroimage.2012.02.018openalex-snapshot
The Human Connectome Project: A data acquisition perspective
inferredcites →https://doi.org/10.1016/j.neuroimage.2015.01.033openalex-snapshot
Determinants of the electric field during transcranial direct current stimulation
inferredcites →https://doi.org/10.1016/j.neuroimage.2018.03.001openalex-snapshot
Automatic skull segmentation from MR images for realistic volume conductor models of the head: Assessment of the state-of-the-art
inferredcites →https://doi.org/10.1016/s0006-3495(67)86598-6openalex-snapshot
The Application of Electromagnetic Theory to Electrocardiology
inferredcites →https://doi.org/10.1016/s0006-3495(67)86599-8openalex-snapshot
The Application of Electromagnetic Theory to Electrocardiology
inferredcites →https://doi.org/10.1016/s0140-6736(18)30295-2openalex-snapshot
Effectiveness of theta burst versus high-frequency repetitive transcranial magnetic stimulation in patients with depression (THREE-D): a randomised non-inferiority trial
inferredcites →https://doi.org/10.1016/s0885-064x(03)00011-6openalex-snapshot
An encyclopaedia of cubature formulas
inferredcites →https://doi.org/10.1063/1.4973604openalex-snapshot
Transcranial Magnetic Stimulation-coil design with improved focality
inferredcites →https://doi.org/10.1088/0031-9155/32/1/004openalex-snapshot
Basic mathematical and electromagnetic concepts of the biomagnetic inverse problem
inferredcites →https://doi.org/10.1088/0031-9155/52/10/016openalex-snapshot
Detailed 3D models of the induced electric field of transcranial magnetic stimulation coils
inferredcites →https://doi.org/10.1088/0031-9155/54/12/002openalex-snapshot
3D modeling of the total electric field induced by transcranial magnetic stimulation using the boundary element method
inferredcites →https://doi.org/10.1088/0031-9155/57/11/3517openalex-snapshot
Bioelectromagnetic forward problem: isolated source approach revis(it)ed
inferredcites →https://doi.org/10.1088/0031-9155/57/23/7753openalex-snapshot
Fast multigrid-based computation of the induced electric field for transcranial magnetic stimulation
inferredcites →https://doi.org/10.1088/0031-9155/61/22/n606openalex-snapshot
Integral equations and boundary-element solution for static potential in a general piece-wise homogeneous volume conductor
inferredcites →https://doi.org/10.1088/1741-2552/aaa505openalex-snapshot
Redesigning existing transcranial magnetic stimulation coils to reduce energy: application to low field magnetic stimulation
inferredcites →https://doi.org/10.1088/1741-2552/aafbb9openalex-snapshot
Comparative performance of the finite element method and the boundary element fast multipole method for problems mimicking transcranial magnetic stimulation (TMS)
inferredcites →https://doi.org/10.1088/1741-2560/8/1/016007openalex-snapshot
Electric field strength and focality in electroconvulsive therapy and magnetic seizure therapy: a finite element simulation study
inferredcites →https://doi.org/10.1101/480103openalex-snapshot
Collection of Sixteen High-Quality Human Head CAD Models Generated with SimNIBS 2.1 Using Connectome Subject Data within MATLAB ® Platform
inferredcites →https://doi.org/10.1101/514919openalex-snapshot
Modeling Primary Fields of TMS Coils with the Fast Multipole Method
inferredcites →https://doi.org/10.1109/10.256433openalex-snapshot
A linear discretization of the volume conductor boundary integral equation using analytically integrated elements (electrophysiology application)
inferredcites →https://doi.org/10.1109/10.293220openalex-snapshot
A complete linear discretization for calculating the magnetic field using the boundary element method
inferredcites →https://doi.org/10.1109/20.717799openalex-snapshot
A general environment for the treatment of discrete problems and its application to the finite element method
inferredcites →https://doi.org/10.1109/embc.2015.7318340openalex-snapshot
Field modeling for transcranial magnetic stimulation: A useful tool to understand the physiological effects of TMS?
inferredcites →https://doi.org/10.1109/embc.2018.8513208openalex-snapshot
Simulations of a birdcage coil B1+ field on a human body model for designing a 3T multichannel TMS/MRI head coil array
inferredcites →https://doi.org/10.1109/iembs.2010.5626096openalex-snapshot
TMS modeling toolbox for realistic simulation
inferredcites →https://doi.org/10.1109/map.2003.1282185openalex-snapshot
Comparison of semi-analytical formulations and gaussian-quadrature rules for quasi-static douwe-surface potential integrals
inferredcites →https://doi.org/10.1109/tap.1984.1143304openalex-snapshot
Potential integrals for uniform and linear source distributions on polygonal and polyhedral domains
inferredcites →https://doi.org/10.1109/tbme.2003.816079openalex-snapshot
The electric field induced in the brain by magnetic stimulation: a 3-d finite-element analysis of the effect of tissue heterogeneity and anisotropy
inferredcites →https://doi.org/10.1109/tbme.2007.894776openalex-snapshot
29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2007)
inferredcites →https://doi.org/10.1109/tbme.2015.2507572openalex-snapshot
Preliminary Upper Estimate of Peak Currents in Transcranial Magnetic Stimulation at Distant Locations From a TMS Coil
inferredcites →https://doi.org/10.1109/tbme.2017.2704540openalex-snapshot
The ICVSIE: A General Purpose Integral Equation Method for Bio-Electromagnetic Analysis
inferredcites →https://doi.org/10.1109/tbme.2018.2813261openalex-snapshot
A Quasi-Static Boundary Element Approach With Fast Multipole Acceleration for High-Resolution Bioelectromagnetic Models
inferredcites →https://doi.org/10.1109/tmag.2015.2514158openalex-snapshot
Investigational Effect of Brain-Scalp Distance on the Efficacy of Transcranial Magnetic Stimulation Treatment in Depression
inferredcites →https://doi.org/10.1109/tmag.2016.2578278openalex-snapshot
Radiation-Hardened Design of Nonvolatile MRAM-Based FPGA
inferredcites →https://doi.org/10.1111/1467-8659.00334openalex-snapshot
Improved Laplacian Smoothing of Noisy Surface Meshes
inferredcites →https://doi.org/10.1137/060659053openalex-snapshot
Numerical Mathematics of the Subtraction Method for the Modeling of a Current Dipole in EEG Source Reconstruction Using Finite Element Head Models
inferredcites →https://doi.org/10.1137/1.9780898718003openalex-snapshot
Iterative Methods for Sparse Linear Systems
inferredcites →https://doi.org/10.1137/1.9781611971538openalex-snapshot
Templates for the Solution of Linear Systems: Building Blocks for Iterative Methods
inferredcites →https://doi.org/10.1137/15m1048392openalex-snapshot
A Discontinuous Galerkin Method to Solve the EEG Forward Problem Using the Subtraction Approach
inferredcites →https://doi.org/10.1145/1268776.1268779openalex-snapshot
deal.II—A general-purpose object-oriented finite element library
inferredcites →https://doi.org/10.13099/vip-phm-v1.0openalex-snapshot
Population Head Model Repository V1.0
inferredcites →https://doi.org/10.13099/vip21000-04-0openalex-snapshot
Tissue Properties Database V4.0
inferredcites →https://doi.org/10.1371/journal.pone.0159595openalex-snapshot
Incorporating and Compensating Cerebrospinal Fluid in Surface-Based Forward Models of Magneto- and Electroencephalography
inferredcites →https://doi.org/10.2172/1409218openalex-snapshot
PETSc Users Manual Revision 3.8
inferredcites →https://doi.org/10.3389/fnins.2018.00030openalex-snapshot
The Discontinuous Galerkin Finite Element Method for Solving the MEG and the Combined MEG/EEG Forward Problem
inferredcites →https://doi.org/10.4208/cicp.150215.260615swopenalex-snapshot
Computational Software: Simple FMM Libraries for Electrostatics, Slow Viscous Flow, and Frequency-Domain Wave Propagation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.brs.2019.09.015openalex-snapshot
Conditions for numerically accurate TMS electric field simulation
inferred← citeshttps://doi.org/10.1016/j.neuroimage.2020.117696openalex-snapshot
Fast computational optimization of TMS coil placement for individualized electric field targeting
inferred← citeshttps://doi.org/10.1016/j.neuroimage.2022.119850openalex-snapshot
Fast computational E-field dosimetry for transcranial magnetic stimulation using adaptive cross approximation and auxiliary dipole method (ACA-ADM)
inferred← citeshttps://doi.org/10.1101/2023.02.08.527758openalex-snapshot
Fast And Accurate Population Level Transcranial Magnetic Stimulation via Low-Rank Probabilistic Matrix Decomposition (PMD)
inferred← citeshttps://doi.org/10.1101/2024.07.03.601851openalex-snapshot
Multi-scale modelling of location- and frequency-dependent synaptic plasticity induced by transcranial magnetic stimulation in the dendrites of pyramidal neurons
inferred← citeshttps://doi.org/10.1109/access.2024.3350734openalex-snapshot
Simplified H1 Coil With a Single Layer of Surface Conductors
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1012295openalex-snapshot
Multi-scale modelling of location- and frequency-dependent synaptic plasticity induced by repetitive magnetic stimulation in the dendrites of pyramidal neurons
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