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Influenza-specific effector memory B cells predict long-lived antibody responses to vaccination in humans

https://doi.org/10.1101/643973
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1107s32openalex-snapshot
Aligning Short Sequencing Reads with Bowtie
inferredcites →https://doi.org/10.1007/978-1-61779-842-9_32openalex-snapshot
IMGT® Tools for the Nucleotide Analysis of Immunoglobulin (IG) and T Cell Receptor (TR) V-(D)-J Repertoires, Polymorphisms, and IG Mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS
inferredcites →https://doi.org/10.1007/s12192-009-0142-9openalex-snapshot
Plasma cell differentiation initiates a limited ER stress response by specifically suppressing the PERK-dependent branch of the unfolded protein response
inferredcites →https://doi.org/10.1016/j.cell.2017.02.004openalex-snapshot
mTOR Signaling in Growth, Metabolism, and Disease
inferredcites →https://doi.org/10.1016/j.cell.2017.04.004openalex-snapshot
Metabolic Instruction of Immunity
inferredcites →https://doi.org/10.1016/j.cell.2019.11.032openalex-snapshot
Restricted Clonality and Limited Germinal Center Reentry Characterize Memory B Cell Reactivation by Boosting
inferredcites →https://doi.org/10.1016/j.celrep.2018.05.053openalex-snapshot
Progressive Upregulation of Oxidative Metabolism Facilitates Plasmablast Differentiation to a T-Independent Antigen
inferredcites →https://doi.org/10.1016/j.celrep.2018.07.084openalex-snapshot
Metabolic and Transcriptional Modules Independently Diversify Plasma Cell Lifespan and Function
inferredcites →https://doi.org/10.1016/j.coi.2017.03.002openalex-snapshot
Role of germinal centers for the induction of broadly-reactive memory B cells
inferredcites →https://doi.org/10.1016/j.coi.2019.04.009openalex-snapshot
Remembering to remember: T cell memory maintenance and plasticity
inferredcites →https://doi.org/10.1016/j.immuni.2004.06.010openalex-snapshot
XBP1, Downstream of Blimp-1, Expands the Secretory Apparatus and Other Organelles, and Increases Protein Synthesis in Plasma Cell Differentiation
inferredcites →https://doi.org/10.1016/j.immuni.2010.08.002openalex-snapshot
Differentiation and Persistence of Memory CD8+ T Cells Depend on T Cell Factor 1
inferredcites →https://doi.org/10.1016/j.immuni.2013.06.011openalex-snapshot
Repression of the Transcription Factor Bach2 Contributes to Predisposition of IgG1 Memory B Cells toward Plasma Cell Differentiation
inferredcites →https://doi.org/10.1016/j.immuni.2015.11.012openalex-snapshot
Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures
inferredcites →https://doi.org/10.1016/j.immuni.2018.08.015openalex-snapshot
Distinct Effector B Cells Induced by Unregulated Toll-like Receptor 7 Contribute to Pathogenic Responses in Systemic Lupus Erythematosus
inferredcites →https://doi.org/10.1016/j.immuni.2019.04.004openalex-snapshot
T-bet Transcription Factor Promotes Antibody-Secreting Cell Differentiation by Limiting the Inflammatory Effects of IFN-γ on B Cells
inferredcites →https://doi.org/10.1016/j.immuni.2019.06.024openalex-snapshot
Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B cell Responses to Influenza Hemagglutinin
inferredcites →https://doi.org/10.1016/j.immuni.2019.10.006openalex-snapshot
The Transcription Factor Tox2 Drives T Follicular Helper Cell Development via Regulating Chromatin Accessibility
inferredcites →https://doi.org/10.1016/j.immuni.2020.03.020openalex-snapshot
The Transcription Factor T-bet Resolves Memory B Cell Subsets with Distinct Tissue Distributions and Antibody Specificities in Mice and Humans
inferredcites →https://doi.org/10.1016/j.immuni.2020.09.005openalex-snapshot
Central memory CD8+ T cells derive from stem-like Tcf7hi effector cells in the absence of cytotoxic differentiation
inferredcites →https://doi.org/10.1016/j.immuni.2020.11.006openalex-snapshot
Germinal Center and Extrafollicular B Cell Responses in Vaccination, Immunity, and Autoimmunity
inferredcites →https://doi.org/10.1016/j.it.2011.10.005openalex-snapshot
T-bet employs diverse regulatory mechanisms to repress transcription
inferredcites →https://doi.org/10.1016/j.it.2017.02.003openalex-snapshot
Transcription Factor T-bet Orchestrates Lineage Development and Function in the Immune System
inferredcites →https://doi.org/10.1016/j.it.2017.08.007openalex-snapshot
Metabolic Links between Plasma Cell Survival, Secretion, and Stress
inferredcites →https://doi.org/10.1016/j.mce.2019.110630openalex-snapshot
Disposing of misfolded ER proteins: A troubled substrate's way out of the ER
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/s0092-8674(02)01139-xopenalex-snapshot
Molecular and Functional Profiling of Memory CD8 T Cell Differentiation
inferredcites →https://doi.org/10.1016/s1074-7613(03)00024-4openalex-snapshot
Sequential Waves of Functionally Related Proteins Are Expressed When B Cells Prepare for Antibody Secretion
inferredcites →https://doi.org/10.1038/nature06890openalex-snapshot
Rapid cloning of high-affinity human monoclonal antibodies against influenza virus
inferredcites →https://doi.org/10.1038/nature07064openalex-snapshot
IRF4 addiction in multiple myeloma
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/ni.2524openalex-snapshot
Plasma cells require autophagy for sustainable immunoglobulin production
inferredcites →https://doi.org/10.1038/ni.2834openalex-snapshot
The transcription factor BATF operates as an essential differentiation checkpoint in early effector CD8+ T cells
inferredcites →https://doi.org/10.1038/ni.3175openalex-snapshot
Diversity, cellular origin and autoreactivity of antibody-secreting cell population expansions in acute systemic lupus erythematosus
inferredcites →https://doi.org/10.1038/ni.3287openalex-snapshot
Regulation of bifurcating B cell trajectories by mutual antagonism between transcription factors IRF4 and IRF8
inferredcites →https://doi.org/10.1038/ni.3460openalex-snapshot
Regulated selection of germinal-center cells into the memory B cell compartment
inferredcites →https://doi.org/10.1038/ni.3533openalex-snapshot
Defining antigen-specific plasmablast and memory B cell subsets in human blood after viral infection or vaccination
inferredcites →https://doi.org/10.1038/ni.3706openalex-snapshot
Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation
inferredcites →https://doi.org/10.1038/ni907openalex-snapshot
Plasma cell differentiation and the unfolded protein response intersect at the transcription factor XBP-1
inferredcites →https://doi.org/10.1038/nri2496openalex-snapshot
Migration, maintenance and recall of memory T cells in peripheral tissues
inferredcites →https://doi.org/10.1038/s41467-017-01475-7openalex-snapshot
IL-2 imprints human naive B cell fate towards plasma cell through ERK/ELK1-mediated BACH2 repression
inferredcites →https://doi.org/10.1038/s41467-018-03750-7openalex-snapshot
IL-21 drives expansion and plasma cell differentiation of autoreactive CD11chiT-bet+ B cells in SLE
inferredcites →https://doi.org/10.1038/s41467-018-04125-8openalex-snapshot
Plasma cell differentiation is controlled by multiple cell division-coupled epigenetic programs
inferredcites →https://doi.org/10.1038/s41467-019-14032-1openalex-snapshot
mTORC1 coordinates an immediate unfolded protein response-related transcriptome in activated B cells preceding antibody secretion
inferredcites →https://doi.org/10.1038/s41577-020-00446-2openalex-snapshot
Transcriptional regulation of memory B cell differentiation
inferredcites →https://doi.org/10.1038/s41586-020-2711-0openalex-snapshot
Human germinal centres engage memory and naive B cells after influenza vaccination
inferredcites →https://doi.org/10.1038/s41590-018-0260-6openalex-snapshot
The establishment of resident memory B cells in the lung requires local antigen encounter
inferredcites →https://doi.org/10.1038/s41590-019-0419-9openalex-snapshot
Epigenetic programming underpins B cell dysfunction in human SLE
inferredcites →https://doi.org/10.1038/s41590-021-00868-7openalex-snapshot
BACH2 enforces the transcriptional and epigenetic programs of stem-like CD8+ T cells
inferredcites →https://doi.org/10.1038/srep27030openalex-snapshot
ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.0511137103openalex-snapshot
Memory T and memory B cells share a transcriptional program of self-renewal with long-term hematopoietic stem cells
inferredcites →https://doi.org/10.1073/pnas.1306691110openalex-snapshot
Bach2 maintains T cells in a naive state by suppressing effector memory-related genes
inferredcites →https://doi.org/10.1089/ars.2011.4252openalex-snapshot
On the Redox Control of B Lymphocyte Differentiation and Function
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btr260openalex-snapshot
Molecular signatures database (MSigDB) 3.0
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1096/fj.201900069ropenalex-snapshot
mTORC1 as a cell‐intrinsic rheostat that shapes development, preimmune repertoire, and function of B lymphocytes
inferredcites →https://doi.org/10.1111/1467-9868.00293openalex-snapshot
Estimating the Number of Clusters in a Data Set Via the Gap Statistic
inferredcites →https://doi.org/10.1111/imr.12201openalex-snapshot
Orchestration of plasma cell differentiation by Bach2 and its gene regulatory network
inferredcites →https://doi.org/10.1126/sciimmunol.aai8153openalex-snapshot
Low CD21 expression defines a population of recent germinal center graduates primed for plasma cell differentiation
inferredcites →https://doi.org/10.1126/scitranslmed.3005191openalex-snapshot
Induction of ICOS + CXCR3 + CXCR5 + T H Cells Correlates with Antibody Responses to Influenza Vaccination
inferredcites →https://doi.org/10.1126/scitranslmed.aad0522openalex-snapshot
Immune history profoundly affects broadly protective B cell responses to influenza
inferredcites →https://doi.org/10.1126/scitranslmed.aan8405openalex-snapshot
Circulating T FH cells, serological memory, and tissue compartmentalization shape human influenza-specific B cell immunity
inferredcites →https://doi.org/10.1128/mcb.01187-14openalex-snapshot
mTOR Activation Promotes Plasma Cell Differentiation and Bypasses XBP-1 for Immunoglobulin Secretion
inferredcites →https://doi.org/10.1172/jci.insight.92943openalex-snapshot
T-bet+ B cells are induced by human viral infections and dominate the HIV gp140 response
inferredcites →https://doi.org/10.1182/blood-2008-01-136440openalex-snapshot
Spi-B inhibits human plasma cell differentiation by repressing BLIMP1 and XBP-1 expression
inferredcites →https://doi.org/10.1186/1476-4598-6-23openalex-snapshot
Bright/ARID3A contributes to chromatin accessibility of the immunoglobulin heavy chain enhancer
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1371/journal.pcbi.1003118openalex-snapshot
Software for Computing and Annotating Genomic Ranges
inferredcites →https://doi.org/10.20455/ros.2017.839openalex-snapshot
Measurement of Mitochondrial Mass by Flow Cytometry during Oxidative Stress
inferredcites →https://doi.org/10.3389/fimmu.2019.01694openalex-snapshot
Techniques to Study Antigen-Specific B Cell Responses
inferredcites →https://doi.org/10.3389/fimmu.2019.02458openalex-snapshot
Challenges and Opportunities for Consistent Classification of Human B Cell and Plasma Cell Populations
inferredcites →https://doi.org/10.4049/jimmunol.1002932openalex-snapshot
Circulating Human Antibody-Secreting Cells during Vaccinations and Respiratory Viral Infections Are Characterized by High Specificity and Lack of Bystander Effect
inferredcites →https://doi.org/10.4049/jimmunol.1201042openalex-snapshot
High Rate of Antibody Secretion Is not Integral to Plasma Cell Differentiation as Revealed by XBP-1 Deficiency
inferredcites →https://doi.org/10.4049/jimmunol.1201150openalex-snapshot
Cutting Edge: Generation of Memory Precursors and Functional Memory CD8+ T Cells Depends on T Cell Factor-1 and Lymphoid Enhancer-Binding Factor-1
inferredcites →https://doi.org/10.4049/jimmunol.1501027openalex-snapshot
Fc Receptor–like 5 Expression Distinguishes Two Distinct Subsets of Human Circulating Tissue–like Memory B Cells
inferredcites →https://doi.org/10.4049/jimmunol.177.6.3791openalex-snapshot
Evidence That Marginal Zone B Cells Possess an Enhanced Secretory Apparatus and Exhibit Superior Secretory Activity
inferredcites →https://doi.org/10.7554/elife.41641.041openalex-snapshot
Author response: IFNγ induces epigenetic programming of human T-bethi B cells and promotes TLR7/8 and IL-21 induced differentiation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.cell.2020.11.029openalex-snapshot
Functional SARS-CoV-2-Specific Immune Memory Persists after Mild COVID-19
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.111613openalex-snapshot
The memory B cell response to influenza vaccination is impaired in older persons
inferred← citeshttps://doi.org/10.1016/j.immuni.2022.08.019openalex-snapshot
Human anti-smallpox long-lived memory B cells are defined by dynamic interactions in the splenic niche and long-lasting germinal center imprinting
inferred← citeshttps://doi.org/10.1016/j.molimm.2022.10.016openalex-snapshot
Identification of virus-specific B-cell epitopes by convalescent plasma from COVID-19 patients
inferred← citeshttps://doi.org/10.1038/s41598-020-69007-wopenalex-snapshot
Impact of vaccine type on HIV-1 vaccine elicited antibody durability and B cell gene signature
inferred← citeshttps://doi.org/10.1101/2021.07.22.453263openalex-snapshot
Gammaherpesvirus infection licenses age-associated B cells for pathogenicity in MS and EAE
inferred← citeshttps://doi.org/10.1126/sciadv.ade6844openalex-snapshot
Gammaherpesvirus infection drives age-associated B cells toward pathogenicity in EAE and MS
inferred← citeshttps://doi.org/10.1126/sciadv.ado1331openalex-snapshot
Deep profiling of B cells responding to various pathogens uncovers compartments in IgG memory B cell and antibody-secreting lineages
inferred← citeshttps://doi.org/10.1172/jci145516openalex-snapshot
Durable SARS-CoV-2 B cell immunity after mild or severe disease
inferred← citeshttps://doi.org/10.1182/blood.2023021990openalex-snapshot
T-bet suppresses proliferation of malignant B cells in chronic lymphocytic leukemia
inferred← citeshttps://doi.org/10.1186/s12936-021-03970-1openalex-snapshot
Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria
inferred← citeshttps://doi.org/10.1371/journal.pone.0261656openalex-snapshot
SARS-CoV-2 spike-specific memory B cells express higher levels of T-bet and FcRL5 after non-severe COVID-19 as compared to severe disease
inferred← citeshttps://doi.org/10.21203/rs.3.rs-57112/v1openalex-snapshot
Functional SARS-CoV-2-specific immune memory persists after mild COVID-19
inferred← citeshttps://doi.org/10.3389/fimmu.2021.688987openalex-snapshot
Memory B Cells in Pregnancy Sensitization
inferred← citeshttps://doi.org/10.6084/m9.figshare.16986649openalex-snapshot
Additional file 1 of Longitudinal analysis of FcRL5 expression and clonal relationships among classical and atypical memory B cells following malaria
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