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Deconstructing taxa x taxa x environment interactions in the microbiota: A theoretical examination

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A structural approach for understanding multispecies coexistence
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The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography
inferredcites →https://doi.org/10.1016/j.cell.2016.06.047openalex-snapshot
Genotypic Context and Epistasis in Individuals and Populations
inferredcites →https://doi.org/10.1016/j.cels.2019.11.004openalex-snapshot
Higher-Order Interaction between Species Inhibits Bacterial Invasion of a Phototroph-Predator Microbial Community
inferredcites →https://doi.org/10.1016/j.cois.2018.02.012openalex-snapshot
The role of the gut microbiome in health and disease of adult honey bee workers
inferredcites →https://doi.org/10.1016/j.coisb.2017.05.015openalex-snapshot
Measuring higher-order drug interactions: A review of recent approaches
inferredcites →https://doi.org/10.1016/j.cub.2019.03.047openalex-snapshot
Modular Assembly of Polysaccharide-Degrading Marine Microbial Communities
inferredcites →https://doi.org/10.1016/j.gde.2013.10.007openalex-snapshot
Should evolutionary geneticists worry about higher-order epistasis?
inferredcites →https://doi.org/10.1016/j.mib.2014.08.001openalex-snapshot
What can we learn from fitness landscapes?
inferredcites →https://doi.org/10.1016/j.physrep.2020.05.004openalex-snapshot
Networks beyond pairwise interactions: Structure and dynamics
inferredcites →https://doi.org/10.1038/ismej.2014.68openalex-snapshot
Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)
inferredcites →https://doi.org/10.1038/nature22898openalex-snapshot
Beyond pairwise mechanisms of species coexistence in complex communities
inferredcites →https://doi.org/10.1038/ncomms9413openalex-snapshot
Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health
inferredcites →https://doi.org/10.1038/nri1373openalex-snapshot
Interactions between commensal intestinal bacteria and the immune system
inferredcites →https://doi.org/10.1038/nri2515openalex-snapshot
The gut microbiota shapes intestinal immune responses during health and disease
inferredcites →https://doi.org/10.1038/s41467-017-00119-0openalex-snapshot
Early-life disruption of amphibian microbiota decreases later-life resistance to parasites
inferredcites →https://doi.org/10.1038/s41467-019-08377-wopenalex-snapshot
Trait-based community assembly and succession of the infant gut microbiome
inferredcites →https://doi.org/10.1038/s41559-016-0062openalex-snapshot
Higher-order interactions capture unexplained complexity in diverse communities
inferredcites →https://doi.org/10.1038/s41567-019-0459-yopenalex-snapshot
From networks to optimal higher-order models of complex systems
inferredcites →https://doi.org/10.1038/s41586-018-0170-7openalex-snapshot
Pairwise and higher-order genetic interactions during the evolution of a tRNA
inferredcites →https://doi.org/10.1038/s41684-018-0173-xopenalex-snapshot
Honey bees as models for gut microbiota research
inferredcites →https://doi.org/10.1073/pnas.1109326109openalex-snapshot
Microbial diversity determines the invasion of soil by a bacterial pathogen
inferredcites →https://doi.org/10.1073/pnas.1110474108openalex-snapshot
Socially transmitted gut microbiota protect bumble bees against an intestinal parasite
inferredcites →https://doi.org/10.1073/pnas.1201281109openalex-snapshot
Mechanism-independent method for predicting response to multidrug combinations in bacteria
inferredcites →https://doi.org/10.1073/pnas.1218525110openalex-snapshot
Animals in a bacterial world, a new imperative for the life sciences
inferredcites →https://doi.org/10.1073/pnas.1613422114openalex-snapshot
Pathogen-mediated manipulation of arthropod microbiota to promote infection
inferredcites →https://doi.org/10.1073/pnas.1703546114openalex-snapshot
Insect pathogenic fungus interacts with the gut microbiota to accelerate mosquito mortality
inferredcites →https://doi.org/10.1073/pnas.1802165115openalex-snapshot
Commensal pathogen competition impacts host viability
inferredcites →https://doi.org/10.1073/pnas.1804015115openalex-snapshot
Inferring the shape of global epistasis
inferredcites →https://doi.org/10.1073/pnas.1809349115openalex-snapshot
Microbiome interactions shape host fitness
inferredcites →https://doi.org/10.1086/282171openalex-snapshot
The Paradox of the Plankton
inferredcites →https://doi.org/10.1086/660833openalex-snapshot
The Evolution of Resistance to a Parasite Is Determined by Resources
inferredcites →https://doi.org/10.1086/686901openalex-snapshot
The Effect of Intra- and Interspecific Competition on Coexistence in Multispecies Communities
inferredcites →https://doi.org/10.1086/701434openalex-snapshot
Priority Effects and Nonhierarchical Competition Shape Species Composition in a Complex Grassland Community
inferredcites →https://doi.org/10.1098/rstb.2010.0226openalex-snapshot
Bacterial symbionts in insects or the story of communities affecting communities
inferredcites →https://doi.org/10.1098/rstb.2015.0325openalex-snapshot
Insect symbionts in food webs
inferredcites →https://doi.org/10.1101/2020.03.01.972349openalex-snapshot
Colonization with heterologous bacteria reprograms a Caenorhabditis elegans nutritional phenotype
inferredcites →https://doi.org/10.1101/282723openalex-snapshot
Cohesiveness in microbial community coalescence
inferredcites →https://doi.org/10.1101/666404openalex-snapshot
The genomic basis of evolved virus resistance is dependent on environmental resources
inferredcites →https://doi.org/10.1111/1462-2920.12381openalex-snapshot
Exploring A nopheles gut bacteria for P lasmodium blocking activity
inferredcites →https://doi.org/10.1111/1574-6976.12025openalex-snapshot
The gut microbiota of insects – diversity in structure and function
inferredcites →https://doi.org/10.1111/1744-7917.12463openalex-snapshot
The evolutionary development of plant‐feeding insects and their nutritional endosymbionts
inferredcites →https://doi.org/10.1111/eea.12768openalex-snapshot
The microbiome of pest insects: it is not just bacteria
inferredcites →https://doi.org/10.1111/j.1365-2311.1994.tb00248.xopenalex-snapshot
Resource limitation and the lethal and sublethal effects of a viral pathogen in the Indian meal moth, Plodia interpunctella
inferredcites →https://doi.org/10.1111/j.1365-2656.2010.01778.xopenalex-snapshot
Network topology: patterns and mechanisms in plant-herbivore and host-parasitoid food webs
inferredcites →https://doi.org/10.1111/j.1420-9101.2008.01501.xopenalex-snapshot
Increasing productivity accelerates host–parasite coevolution
inferredcites →https://doi.org/10.1126/science.1223490openalex-snapshot
Interactions Between the Microbiota and the Immune System
inferredcites →https://doi.org/10.1128/aem.02335-17openalex-snapshot
Microbiome Structure Influences Infection by the Parasite Crithidia bombi in Bumble Bees
inferredcites →https://doi.org/10.1128/aem.02742-13openalex-snapshot
Interspecies Interactions Determine the Impact of the Gut Microbiota on Nutrient Allocation in Drosophila melanogaster
inferredcites →https://doi.org/10.1128/mbio.01121-16openalex-snapshot
The Gut Microbiome of the Vector Lutzomyia longipalpis Is Essential for Survival of Leishmania infantum
inferredcites →https://doi.org/10.1146/annurev.ecolsys.31.1.343openalex-snapshot
Mechanisms of Maintenance of Species Diversity
inferredcites →https://doi.org/10.1186/1471-2148-8-76openalex-snapshot
The evolutionary costs of immunological maintenance and deployment
inferredcites →https://doi.org/10.1186/gm561openalex-snapshot
Why epistasis is important for tackling complex human disease genetics
inferredcites →https://doi.org/10.1371/journal.pbio.2005710openalex-snapshot
Drosophila melanogaster establishes a species-specific mutualistic interaction with stable gut-colonizing bacteria
inferredcites →https://doi.org/10.1371/journal.pbio.3000550openalex-snapshot
High-order interactions distort the functional landscape of microbial consortia
inferredcites →https://doi.org/10.1371/journal.pcbi.1004771openalex-snapshot
The Context-Dependence of Mutations: A Linkage of Formalisms
inferredcites →https://doi.org/10.1371/journal.pone.0123752openalex-snapshot
The Impact of Resource Availability on Bacterial Resistance to Phages in Soil
inferredcites →https://doi.org/10.1371/journal.pone.0220891openalex-snapshot
Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes
inferredcites →https://doi.org/10.1371/journal.ppat.1008398openalex-snapshot
Drosophila as a model for the gut microbiome
inferredcites →https://doi.org/10.1534/genetics.116.195214openalex-snapshot
Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype Maps
inferredcites →https://doi.org/10.1534/genetics.119.302138openalex-snapshot
Proteostasis Environment Shapes Higher-Order Epistasis Operating on Antibiotic Resistance
inferredcites →https://doi.org/10.2307/1933884openalex-snapshot
The Competitive Structure of Communities: An Experimental Approach with Protozoa
inferredcites →https://doi.org/10.2307/1939613openalex-snapshot
Special Feature: Higher Order Interactions as a Foil to Reductionist Ecology
inferredcites →https://doi.org/10.3389/fnut.2018.00080openalex-snapshot
A Comparative Review on Microbiota Manipulation: Lessons From Fish, Plants, Livestock, and Human Research
inferredcites →https://doi.org/10.3390/ijms18112450openalex-snapshot
New Insights into the Microbiota of Moth Pests
inferredcites →https://doi.org/10.7554/elife.40018openalex-snapshot
Are theoretical results ‘Results’?
inferredcites →https://doi.org/10.7554/elife.51004openalex-snapshot
Rank orders and signed interactions in evolutionary biology

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-981-96-2216-0_24openalex-snapshot
Consensus Relations of Nodal Networks and Edge Networks: From the Spectral Perspective
inferred← citeshttps://doi.org/10.1016/j.cels.2021.09.011openalex-snapshot
Functional attractors in microbial community assembly
inferred← citeshttps://doi.org/10.1038/s41559-021-01457-5openalex-snapshot
Engineering complex communities by directed evolution
inferred← citeshttps://doi.org/10.1073/pnas.2205063119openalex-snapshot
Coexistence in diverse communities with higher-order interactions
inferred← citeshttps://doi.org/10.1098/rstb.2019.0256openalex-snapshot
Understanding the evolution of interspecies interactions in microbial communities
inferred← citeshttps://doi.org/10.1101/2021.09.26.461405openalex-snapshot
Metacommunity framework and its core terms entanglement
inferred← citeshttps://doi.org/10.1146/annurev-biophys-101220-072829openalex-snapshot
Directed Evolution of Microbial Communities
inferred← citeshttps://doi.org/10.1159/000547754openalex-snapshot
Intelligence, from Origins to Human Culture: An Eco-Evolutionary Perspective
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000550openalex-snapshot
High-order interactions distort the functional landscape of microbial consortia
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