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Lanthanide transport, storage, and beyond: gene products and processes contributing to lanthanide and methanol metabolism in Methylorubrum extorquens AM1

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Essential and Ubiquitous: The Emergence of Lanthanide Metallobiochemistry

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Biochemical and Structural Characterization of XoxG and XoxJ and Their Roles in Lanthanide‐Dependent Methanol Dehydrogenase Activity

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How Can Methanol Dehydrogenase from Methylacidiphilum fumariolicum Work with the Alien CeIII Ion in the Active Center? A Theoretical Study

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Insertion of In-frame Sequence Tags into Proteins Using Transposons

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Polyamines in Bacteria: Pleiotropic Effects yet Specific Mechanisms

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Lanthanum as an intracellular stain for electron microscopy

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Biochemistry of inorganic polyphosphates

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Iron regulates transcription of the Escherichia coli ferric citrate transport genes directly and through the transcription initiation proteins

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Aerobic bioreduction of nickel(II) to elemental nickel with concomitant biomineralization

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PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference

inferredcites →https://doi.org/10.1007/s00253-014-6240-3openalex-snapshot

Methylobacterium extorquens: methylotrophy and biotechnological applications

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Structure and function of the lanthanide-dependent methanol dehydrogenase XoxF from the methanotroph Methylomicrobium buryatense 5GB1C

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Characterization of ferric-anguibactin transport in Vibrio anguillarum

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Power plays: iron transport and energy transduction in pathogenic vibrios

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Lanthanides: New life metals?

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Adsorption and mineralization of REE—lanthanum onto bacterial cell surface

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Continued surprises in the cytochrome c biogenesis story

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Characterization of a novel cytochrome c as the electron acceptor of XoxF-MDH in the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV

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Role of rare earth elements in methanol oxidation

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Optimization of Gene Expression through Divergent Mutational Paths

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Biosynthesis of cadmium sulfide nanoparticles by photosynthetic bacteria Rhodopseudomonas palustris

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Synthetic methylotrophy: engineering the production of biofuels and chemicals based on the biology of aerobic methanol utilization

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Lanthanide-dependent methanol dehydrogenase from the legume symbiotic nitrogen-fixing bacterium Bradyrhizobium diazoefficiens strain USDA110

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Formation of volutin granules in Corynebacterium glutamicum

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Ce3+-induced exopolysaccharide production by Bradyrhizobium sp. MAFF211645

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Molecular structure of La3+-induced methanol dehydrogenase-like protein in Methylobacterium radiotolerans

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Current Trends in Methylotrophy

inferredcites →https://doi.org/10.1016/s0045-6535(03)00220-0openalex-snapshot

Lanthanum fixation by Myxococcus xanthus: cellular location and extracellular polysaccharide observation

inferredcites →https://doi.org/10.1016/s1570-9639(03)00097-9openalex-snapshot

The role of the MxaD protein in the respiratory chain of Methylobacterium extorquens during growth on methanol

inferredcites →https://doi.org/10.1021/acs.inorgchem.6b00919openalex-snapshot

Lanthanide Chemistry: From Coordination in Chemical Complexes Shaping Our Technology to Coordination in Enzymes Shaping Bacterial Metabolism

inferredcites →https://doi.org/10.1021/acs.jmedchem.5b01975openalex-snapshot

Lanthanides: Applications in Cancer Diagnosis and Therapy

inferredcites →https://doi.org/10.1021/jacs.7b12318openalex-snapshot

Functional Synthetic Model for the Lanthanide-Dependent Quinoid Alcohol Dehydrogenase Active Site

inferredcites →https://doi.org/10.1021/jacs.8b09842openalex-snapshot

Lanmodulin: A Highly Selective Lanthanide-Binding Protein from a Lanthanide-Utilizing Bacterium

inferredcites →https://doi.org/10.1021/jacs.8b12155openalex-snapshot

A Selective, Protein-Based Fluorescent Sensor with Picomolar Affinity for Rare Earth Elements

inferredcites →https://doi.org/10.1038/nbt0102-87openalex-snapshot

A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications

inferredcites →https://doi.org/10.1038/nbt1183-784openalex-snapshot

A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria

inferredcites →https://doi.org/10.1038/s41396-019-0414-zopenalex-snapshot

Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes

inferredcites →https://doi.org/10.1038/s41598-019-41043-1openalex-snapshot

Contrasting in vitro and in vivo methanol oxidation activities of lanthanide-dependent alcohol dehydrogenases XoxF1 and ExaF from Methylobacterium extorquens AM1

inferredcites →https://doi.org/10.1038/srep19501openalex-snapshot

Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase–an Essential Enzyme of the Polyamine Metabolism

inferredcites →https://doi.org/10.1039/c3mt00052dopenalex-snapshot

Aerobic uranium immobilization by Rhodanobacter A2-61 through formation of intracellular uranium–phosphate complexes

inferredcites →https://doi.org/10.1039/c8dt01238eopenalex-snapshot

Impact of the lanthanide contraction on the activity of a lanthanide-dependent methanol dehydrogenase – a kinetic and DFT study

inferredcites →https://doi.org/10.1073/pnas.1105959108openalex-snapshot

A bacterial process for selenium nanosphere assembly

inferredcites →https://doi.org/10.1073/pnas.1304243110openalex-snapshot

Energy-dependent motion of TonB in the Gram-negative bacterial inner membrane

inferredcites →https://doi.org/10.1073/pnas.2036282100openalex-snapshot

Comprehensive transposon mutant library of Pseudomonas aeruginosa

inferredcites →https://doi.org/10.1073/pnas.76.4.1648openalex-snapshot

Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans

inferredcites →https://doi.org/10.1073/pnas.96.19.10673openalex-snapshot

Site-directed disulfide bonding reveals an interaction site between energy-coupling protein TonB and BtuB, the outer membrane cobalamin transporter

inferredcites →https://doi.org/10.1073/pnas.96.24.13611openalex-snapshot

Silver-based crystalline nanoparticles, microbially fabricated

inferredcites →https://doi.org/10.1074/jbc.270.45.26723openalex-snapshot

Siderophores: Structure and Function of Microbial Iron Transport Compounds

inferredcites →https://doi.org/10.1093/femsle/fnw129openalex-snapshot

Uptake and effect of rare earth elements on gene expression inMethylosinus trichosporiumOB3b

inferredcites →https://doi.org/10.1093/nar/gki408openalex-snapshot

The HHpred interactive server for protein homology detection and structure prediction

inferredcites →https://doi.org/10.1093/nar/gkm631openalex-snapshot

Discovery of Fur binding site clusters in Escherichia coli by information theory models

inferredcites →https://doi.org/10.1093/nar/gkx246openalex-snapshot

GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure

inferredcites →https://doi.org/10.1098/rsta.1961.0007openalex-snapshot

Dynamical theory of electron diffraction for the electron microscopic image of crystal lattices II. Image of superposed crystals (moiré pattern)

inferredcites →https://doi.org/10.1099/00221287-143-5-1729openalex-snapshot

Molecular and mutational analysis of a DNA region separating two methylotrophy gene clusters in Methylobacterium extorquens AM1

inferredcites →https://doi.org/10.1099/00221287-143-5-1737openalex-snapshot

Molecular analysis of mxbD and mxbM, a putative sensor-regulator pair required for oxidation of methanol in Methylobacterium extorquens AM1

inferredcites →https://doi.org/10.1099/00221287-147-8-2065openalex-snapshot

Development of improved versatile broad-host-range vectors for use in methylotrophs and other Gram-negative bacteria The GenBank accession numbers for the sequences reported in this paper are AF327711, AF327712, AF327713, AF327714, AF327715, AF327716, AF327717, AF327718, AF327719 and AF327720.

inferredcites →https://doi.org/10.1111/1462-2920.12249openalex-snapshot

Rare earth metals are essential for methanotrophic life in volcanic mudpots

inferredcites →https://doi.org/10.1111/1462-2920.12896openalex-snapshot

XoxF encoding an alternative methanol dehydrogenase is widespread in coastal marine environments

inferredcites →https://doi.org/10.1111/j.1365-2958.1994.tb00373.xopenalex-snapshot

Repression of tonB transcription during anaerobic growth requires Fur binding at the promoter and a second factor binding upstream

inferredcites →https://doi.org/10.1111/j.1365-2958.1994.tb01013.xopenalex-snapshot

Peptidase activity of Escherichia coli aminopeptidase A is not required for its role in Xer site‐specific recombination

inferredcites →https://doi.org/10.1111/mmi.14208openalex-snapshot

Use of rare‐earth elements in the phyllosphere colonizer Methylobacterium extorquens PA1

inferredcites →https://doi.org/10.1111/mmi.14210openalex-snapshot

New pieces to the lanthanide puzzle

inferredcites →https://doi.org/10.1126/sciadv.1700041openalex-snapshot

Methylmercury uptake and degradation by methanotrophs

inferredcites →https://doi.org/10.1126/science.1216171openalex-snapshot

An Early-Branching Microbialite Cyanobacterium Forms Intracellular Carbonates

inferredcites →https://doi.org/10.1126/science.2834821openalex-snapshot

Toxic DNA Damage by Hydrogen Peroxide Through the Fenton Reaction in Vivo and in Vitro

inferredcites →https://doi.org/10.1126/science.aaa9091openalex-snapshot

Just add lanthanides

inferredcites →https://doi.org/10.1128/aem.01838-14openalex-snapshot

Expanding the Verrucomicrobial Methanotrophic World: Description of Three Novel Species of Methylacidimicrobium gen. nov

inferredcites →https://doi.org/10.1128/aem.02887-17openalex-snapshot

Facile Arsenazo III-Based Assay for Monitoring Rare Earth Element Depletion from Cultivation Media for Methanotrophic and Methylotrophic Bacteria

inferredcites →https://doi.org/10.1128/aem.55.12.3143-3149.1989openalex-snapshot

Bacterial sorption of heavy metals

inferredcites →https://doi.org/10.1128/aem.65.2.489-498.1999openalex-snapshot

Effect of O-Side-Chain-Lipopolysaccharide Chemistry on Metal Binding

inferredcites →https://doi.org/10.1128/jb.00120-19openalex-snapshot

A Mutagenic Screen Identifies a TonB-Dependent Receptor Required for the Lanthanide Metal Switch in the Type I Methanotroph “Methylotuvimicrobium buryatense” 5GB1C

inferredcites →https://doi.org/10.1128/jb.00478-16openalex-snapshot

Pyrroloquinoline Quinone Ethanol Dehydrogenase in Methylobacterium extorquens AM1 Extends Lanthanide-Dependent Metabolism to Multicarbon Substrates

inferredcites →https://doi.org/10.1128/jb.00937-15openalex-snapshot

Lanthanide-Dependent Regulation of Methanol Oxidation Systems in Methylobacterium extorquens AM1 and Their Contribution to Methanol Growth

inferredcites →https://doi.org/10.1128/jb.05367-11openalex-snapshot

XoxF Is Required for Expression of Methanol Dehydrogenase in Methylobacterium extorquens AM1

inferredcites →https://doi.org/10.1128/jb.166.2.581-590.1986openalex-snapshot

Isolation and complementation analysis of 10 methanol oxidation mutant classes and identification of the methanol dehydrogenase structural gene of Methylobacterium sp. strain AM1

inferredcites →https://doi.org/10.1128/jb.171.2.1048-1054.1989openalex-snapshot

Mechanism for iron-regulated transcription of the Escherichia coli cir gene: metal-dependent binding of fur protein to the promoters

inferredcites →https://doi.org/10.1128/jb.173.1.141-149.1991openalex-snapshot

Lanthanide accumulation in the periplasmic space of Escherichia coli B

inferredcites →https://doi.org/10.1128/jb.176.6.1746-1755.1994openalex-snapshot

Isolation, phenotypic characterization, and complementation analysis of mutants of Methylobacterium extorquens AM1 unable to synthesize pyrroloquinoline quinone and sequences of pqqD, pqqG, and pqqC

inferredcites →https://doi.org/10.1128/jb.185.10.2980-2987.2003openalex-snapshot

Methylotrophy in Methylobacterium extorquens AM1 from a Genomic Point of View

inferredcites →https://doi.org/10.1128/jb.185.2.669-673.2003openalex-snapshot

Novel Methylotrophy Genes of Methylobacterium extorquens AM1 Identified by using Transposon Mutagenesis Including a Putative Dihydromethanopterin Reductase

inferredcites →https://doi.org/10.1128/jb.185.23.7160-7168.2003openalex-snapshot

Formaldehyde-Detoxifying Role of theTetrahydromethanopterin-Linked Pathway in Methylobacteriumextorquens AM1

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STUDIES ON LYSOGENESIS I

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METACHROMATIC GRANULES OF MICROORGANISMS

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Structures Containing Polyphosphate in Micrococcus lysodeikticus

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Functional Role of Lanthanides in Enzymatic Activity and Transcriptional Regulation of Pyrroloquinoline Quinone-Dependent Alcohol Dehydrogenases in Pseudomonas putida KT2440

inferredcites →https://doi.org/10.1128/mbio.02430-17openalex-snapshot

Physiological Effect of XoxG(4) on Lanthanide-Dependent Methanotrophy

inferredcites →https://doi.org/10.1128/msphere.00376-18openalex-snapshot

The PedS2/PedR2 Two-Component System Is Crucial for the Rare Earth Element Switch in Pseudomonas putida KT2440

inferredcites →https://doi.org/10.1128/msphere.00462-17openalex-snapshot

Lanthanide-Dependent Regulation of Methylotrophy in Methylobacterium aquaticum Strain 22A

inferredcites →https://doi.org/10.1146/annurev.mi.47.100193.003121openalex-snapshot

MOLECULAR BIOLOGY OF THE LysR FAMILY OF TRANSCRIPTIONAL REGULATORS

inferredcites →https://doi.org/10.1146/annurev.micro.112408.134247openalex-snapshot

TonB-Dependent Transporters: Regulation, Structure, and Function

inferredcites →https://doi.org/10.1186/1756-0500-1-1openalex-snapshot

Development of a broad-host-range sacB-based vector for unmarked allelic exchange

inferredcites →https://doi.org/10.1371/journal.pone.0050480openalex-snapshot

A Catalytic Role of XoxF1 as La3+-Dependent Methanol Dehydrogenase in Methylobacterium extorquens Strain AM1

inferredcites →https://doi.org/10.1371/journal.pone.0062957openalex-snapshot

Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens

inferredcites →https://doi.org/10.2144/02335rr01openalex-snapshot

Broad-Host-Range cre-lox System for Antibiotic Marker Recycling in Gram-Negative Bacteria

inferredcites →https://doi.org/10.21775/cimb.033.101openalex-snapshot

Lanthanides in Methylotrophy

inferredcites →https://doi.org/10.2210/pdb6onq/pdbopenalex-snapshot

Crystal structure of c-type cytochrome XoxG from Methylobacterium extorquens AM1

inferredcites →https://doi.org/10.3389/fmicb.2013.00352openalex-snapshot

The magnetosome model: insights into the mechanisms of bacterial biomineralization

inferredcites →https://doi.org/10.3389/fmicb.2018.01366openalex-snapshot

Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties

inferredcites →https://doi.org/10.3389/fmicb.2018.02735openalex-snapshot

Rare Earth Elements Alter Redox Balance in Methylomicrobium alcaliphilum 20ZR

inferredcites →https://doi.org/10.3389/fmicb.2019.01347openalex-snapshot

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture

inferredcites →https://doi.org/10.7717/peerj.2435openalex-snapshot

MxaY regulates the lanthanide-mediated methanol dehydrogenase switch in Methylomicrobium buryatense

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1021/acs.inorgchem.5c04208openalex-snapshot

Supramolecular Encapsulation of [Nd(NO 3 ) 6 ] 3– by dpat Retained in Acetonitrile

inferred← citeshttps://doi.org/10.1021/acscentsci.9b00642openalex-snapshot

The Chemistry of Lanthanides in Biology: Recent Discoveries, Emerging Principles, and Technological Applications

inferred← citeshttps://doi.org/10.1074/jbc.ra120.013227openalex-snapshot

Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function

inferred← citeshttps://doi.org/10.1128/aem.01830-19openalex-snapshot

Lanthanide-Dependent Methylotrophs of the Family Beijerinckiaceae : Physiological and Genomic Insights

inferred← citeshttps://doi.org/10.1128/mbio.00516-20openalex-snapshot

The Cellular Response to Lanthanum Is Substrate Specific and Reveals a Novel Route for Glycerol Metabolism in Pseudomonas putida KT2440

inferred← citeshttps://doi.org/10.1180/mgm.2020.90openalex-snapshot

Secondary lanthanide phosphate mineralisation in weathering profiles of I-, S- and A-type granites

inferred← citeshttps://doi.org/10.3389/fmicb.2019.02494openalex-snapshot

Rare Earth Element (REE)-Dependent Growth of Pseudomonas putida KT2440 Relies on the ABC-Transporter PedA1A2BC and Is Influenced by Iron Availability

inferred← citeshttps://doi.org/10.3390/microorganisms8060822openalex-snapshot

Lanthanide-Dependent Methanol and Formaldehyde Oxidation in Methylobacterium aquaticum Strain 22A

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