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Exautomate: A user-friendly tool for region-based rare variant association analysis (RVAA)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gepi.21689openalex-snapshot
Robust and Powerful Tests for Rare Variants Using Fisher's Method to Combine Evidence of Association From Two or More Complementary Tests
inferredcites →https://doi.org/10.1002/humu.23634openalex-snapshot
ClinVar database of global familial hypercholesterolemia‐associated DNA variants
inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1007/978-1-4939-7868-7_6openalex-snapshot
Meta-Analysis of Common and Rare Variants
inferredcites →https://doi.org/10.1007/978-3-319-24277-4_9openalex-snapshot
Data Analysis
inferredcites →https://doi.org/10.1007/s11357-016-9885-2openalex-snapshot
Gene-based aggregate SNP associations between candidate AD genes and cognitive decline
inferredcites →https://doi.org/10.1007/s12561-012-9062-9openalex-snapshot
Statistical Challenges in Sequence-Based Association Studies with Population- and Family-Based Designs
inferredcites →https://doi.org/10.1016/j.ajhg.2011.05.029openalex-snapshot
Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test
inferredcites →https://doi.org/10.1016/j.ajhg.2012.06.007openalex-snapshot
Optimal Unified Approach for Rare-Variant Association Testing with Application to Small-Sample Case-Control Whole-Exome Sequencing Studies
inferredcites →https://doi.org/10.1016/j.ajhg.2014.06.009openalex-snapshot
Rare-Variant Association Analysis: Study Designs and Statistical Tests
inferredcites →https://doi.org/10.1016/j.ajhg.2016.05.007openalex-snapshot
Exome Genotyping Identifies Pleiotropic Variants Associated with Red Blood Cell Traits
inferredcites →https://doi.org/10.1016/j.drudis.2017.01.014openalex-snapshot
Next-generation sequencing: big data meets high performance computing
inferredcites →https://doi.org/10.1016/j.je.2016.12.006openalex-snapshot
Overview of BioBank Japan follow-up data in 32 diseases
inferredcites →https://doi.org/10.1016/j.metabol.2015.09.020openalex-snapshot
Resequencing of the CETP gene in American whites and African blacks: Association of rare and common variants with HDL-cholesterol levels
inferredcites →https://doi.org/10.1016/j.tig.2018.09.007openalex-snapshot
Genomic and Phenomic Research in the 21st Century
inferredcites →https://doi.org/10.1038/ejhg.2014.268openalex-snapshot
Resequencing of LPL in African Blacks and associations with lipoprotein–lipid levels
inferredcites →https://doi.org/10.1038/nature21039openalex-snapshot
Rare and low-frequency coding variants alter human adult height
inferredcites →https://doi.org/10.1038/ng.118openalex-snapshot
Rare independent mutations in renal salt handling genes contribute to blood pressure variation
inferredcites →https://doi.org/10.1038/ng.2892openalex-snapshot
A general framework for estimating the relative pathogenicity of human genetic variants
inferredcites →https://doi.org/10.1038/ng.3249openalex-snapshot
A recombined allele of the lipase gene CEL and its pseudogene CELP confers susceptibility to chronic pancreatitis
inferredcites →https://doi.org/10.1038/ng1509openalex-snapshot
Low LDL cholesterol in individuals of African descent resulting from frequent nonsense mutations in PCSK9
inferredcites →https://doi.org/10.1038/ng1984openalex-snapshot
Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL
inferredcites →https://doi.org/10.1038/nrdp.2017.93openalex-snapshot
Familial hypercholesterolaemia
inferredcites →https://doi.org/10.1038/nrg2481openalex-snapshot
Plasma lipoproteins: genetic influences and clinical implications
inferredcites →https://doi.org/10.1038/s41569-018-0052-6openalex-snapshot
The complex molecular genetics of familial hypercholesterolaemia
inferredcites →https://doi.org/10.1038/s41588-017-0011-xopenalex-snapshot
Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity
inferredcites →https://doi.org/10.1056/nejmoa054013openalex-snapshot
Sequence Variations in PCSK9, Low LDL, and Protection against Coronary Heart Disease
inferredcites →https://doi.org/10.1080/21678421.2016.1213852openalex-snapshot
Rare genetic variation in UNC13A may modify survival in amyotrophic lateral sclerosis
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btq671openalex-snapshot
Tabix: fast retrieval of sequence features from generic TAB-delimited files
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
inferredcites →https://doi.org/10.1093/nar/gkq603openalex-snapshot
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
inferredcites →https://doi.org/10.1093/nar/gky1016openalex-snapshot
CADD: predicting the deleteriousness of variants throughout the human genome
inferredcites →https://doi.org/10.1097/mol.0000000000000386openalex-snapshot
Complexity of mechanisms among human proprotein convertase subtilisin–kexin type 9 variants
inferredcites →https://doi.org/10.1101/452532openalex-snapshot
Challenges and recommendations to improve installability and archival stability of omics computational tools
inferredcites →https://doi.org/10.1101/531210openalex-snapshot
The mutational constraint spectrum quantified from variation in 141,456 humans
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1126/science.1099870openalex-snapshot
Multiple Rare Alleles Contribute to Low Plasma Levels of HDL Cholesterol
inferredcites →https://doi.org/10.1146/annurev-genom-091416-035517openalex-snapshot
The Future of Genomic Studies Must Be Globally Representative: Perspectives from PAGE
inferredcites →https://doi.org/10.1146/annurev-pharmtox-010716-104944openalex-snapshot
PCSK9: Regulation and Target for Drug Development for Dyslipidemia
inferredcites →https://doi.org/10.1161/atvbaha.116.308027openalex-snapshot
Polygenic Versus Monogenic Causes of Hypercholesterolemia Ascertained Clinically
inferredcites →https://doi.org/10.1186/s12920-016-0190-9openalex-snapshot
Integration of bioinformatics and imaging informatics for identifying rare PSEN1 variants in Alzheimer’s disease
inferredcites →https://doi.org/10.1186/s12929-014-0088-9openalex-snapshot
Identifying rare and common disease associated variants in genomic data using Parkinson's disease as a model
inferredcites →https://doi.org/10.1186/s13073-015-0138-2openalex-snapshot
Rare variant association studies: considerations, challenges and opportunities
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1194/jlr.d045963openalex-snapshot
LipidSeq: a next-generation clinical resequencing panel for monogenic dyslipidemias
inferredcites →https://doi.org/10.1194/jlr.m043265openalex-snapshot
Lipoprotein lipase gene sequencing and plasma lipid profile
inferredcites →https://doi.org/10.1371/journal.pcbi.1004993openalex-snapshot
Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level
inferredcites →https://doi.org/10.1371/journal.pgen.1005165openalex-snapshot
The Power of Gene-Based Rare Variant Methods to Detect Disease-Associated Variation and Test Hypotheses About Complex Disease
inferredcites →https://doi.org/10.1371/journal.pmed.1001779openalex-snapshot
UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age
inferredcites →https://doi.org/10.1371/journal.pone.0188566openalex-snapshot
A non-threshold region-specific method for detecting rare variants in complex diseases
inferredcites →https://doi.org/10.18637/jss.v021.i12openalex-snapshot
Reshaping Data with the reshape Package
inferredcites →https://doi.org/10.3389/fgene.2015.00136openalex-snapshot
PCSK9 variation and association with blood pressure in African Americans: preliminary findings from the HyperGEN and REGARDS studies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.jacl.2020.11.007openalex-snapshot
Ancestry-specific profiles of genetic determinants of severe hypertriglyceridemia
inferred← citeshttps://doi.org/10.1038/s41525-021-00243-3openalex-snapshot
Contribution of rare variant associations to neurodegenerative disease presentation
inferred← citeshttps://doi.org/10.1161/atvbaha.120.314168openalex-snapshot
Loss-of-Function CREB3L3 Variants in Patients With Severe Hypertriglyceridemia
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