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Constructing a high-density linkage map to infer the genomic landscape of recombination rate variation in European Aspen (Populus tremula)

https://doi.org/10.1101/664037
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1110s43openalex-snapshot
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
inferredcites →https://doi.org/10.1002/0471250953.bi1112s47openalex-snapshot
BEDTools: The Swiss‐Army Tool for Genome Feature Analysis
inferredcites →https://doi.org/10.1007/bf02459575openalex-snapshot
Evolution in mendelian populations
inferredcites →https://doi.org/10.1007/s00122-003-1478-7openalex-snapshot
Genetic mapping in (Populus tomentosa × Populus bolleana) and P. tomentosa Carr. using AFLP markers
inferredcites →https://doi.org/10.1007/s00122-005-0097-xopenalex-snapshot
RECORD: a novel method for ordering loci on a genetic linkage map
inferredcites →https://doi.org/10.1007/s11295-007-0108-yopenalex-snapshot
Natural phenological variation in aspen (Populus tremula): the SwAsp collection
inferredcites →https://doi.org/10.1007/s11295-010-0297-7openalex-snapshot
Genetic linkage maps of Populus alba L. and comparative mapping analysis of sex determination across Populus species
inferredcites →https://doi.org/10.1016/j.jnc.2003.08.002openalex-snapshot
Long-term persistence of aspen – a key host for many threatened species – is endangered in old-growth conservation areas in Finland
inferredcites →https://doi.org/10.1016/j.pbi.2010.08.017openalex-snapshot
Differentiation of epigenetic modifications between transposons and genes
inferredcites →https://doi.org/10.1016/j.pbi.2012.09.002openalex-snapshot
Control of meiotic recombination frequency in plant genomes
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0959-437x(02)00358-1openalex-snapshot
Variation in recombination rate across the genome: evidence and implications
inferredcites →https://doi.org/10.1038/356519a0openalex-snapshot
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
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Genomic insights into salt adaptation in a desert poplar
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Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/ng2115openalex-snapshot
Recombination and linkage disequilibrium in Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1073/pnas.0801848105openalex-snapshot
Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence
inferredcites →https://doi.org/10.1073/pnas.0902972106openalex-snapshot
Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions
inferredcites →https://doi.org/10.1073/pnas.1413864112openalex-snapshot
Recombination in diverse maize is stable, predictable, and associated with genetic load
inferredcites →https://doi.org/10.1073/pnas.1801437115openalex-snapshot
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
inferredcites →https://doi.org/10.1093/bioinformatics/btm315openalex-snapshot
MareyMap: an R-based tool with graphical interface for estimating recombination rates
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-snapshot
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts277openalex-snapshot
BEDOPS: high-performance genomic feature operations
inferredcites →https://doi.org/10.1093/bioinformatics/btu091openalex-snapshot
LPmerge: an R package for merging genetic maps by linear programming
inferredcites →https://doi.org/10.1093/bioinformatics/btw044openalex-snapshot
BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data
inferredcites →https://doi.org/10.1093/genetics/78.2.737openalex-snapshot
THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION
inferredcites →https://doi.org/10.1093/molbev/msp255openalex-snapshot
Natural Selection on Synonymous and Nonsynonymous Mutations Shapes Patterns of Polymorphism in Populus tremula
inferredcites →https://doi.org/10.1093/nar/gkq963openalex-snapshot
The UCSC Genome Browser database: update 2011
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003886openalex-snapshot
Local Rates of Recombination Are Positively Correlated with GC Content in the Human Genome
inferredcites →https://doi.org/10.1098/rstb.2016.0455openalex-snapshot
Variation in recombination frequency and distribution across eukaryotes: patterns and processes
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1104/pp.108.133249openalex-snapshot
The Control of Autumn Senescence in European Aspen
inferredcites →https://doi.org/10.1105/tpc.18.00750openalex-snapshot
Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice
inferredcites →https://doi.org/10.1111/j.1469-8137.2012.04258.xopenalex-snapshot
Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
inferredcites →https://doi.org/10.1111/j.2007.0018-0661.02000.xopenalex-snapshot
OneMap: software for genetic mapping in outcrossing species
inferredcites →https://doi.org/10.1111/mec.14699openalex-snapshot
Meta‐analysis of chromosome‐scale crossover rate variation in eukaryotes and its significance to evolutionary genomics
inferredcites →https://doi.org/10.1111/nph.13319openalex-snapshot
Widely distributed hot and cold spots in meiotic recombination as shown by the sequencing of rice F 2 plants
inferredcites →https://doi.org/10.1111/nph.13505openalex-snapshot
Genome‐wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history of E ucalyptus grandis
inferredcites →https://doi.org/10.1111/tpj.12870openalex-snapshot
Meiotic recombination hotspots – a comparative view
inferredcites →https://doi.org/10.1126/science.1092500openalex-snapshot
The Fine-Scale Structure of Recombination Rate Variation in the Human Genome
inferredcites →https://doi.org/10.1126/science.1128691openalex-snapshot
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103956openalex-snapshot
Populus : A Model System for Plant Biology
inferredcites →https://doi.org/10.1186/s12862-015-0473-3openalex-snapshot
The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms
inferredcites →https://doi.org/10.1186/s12870-017-1127-yopenalex-snapshot
Development of F1 hybrid population and the high-density linkage map for European aspen (Populus tremula L.) using RADseq technology
inferredcites →https://doi.org/10.1186/s13059-014-0573-1openalex-snapshot
ALLMAPS: robust scaffold ordering based on multiple maps
inferredcites →https://doi.org/10.1186/s13059-018-1444-yopenalex-snapshot
A major locus controls local adaptation and adaptive life history variation in a perennial plant
inferredcites →https://doi.org/10.1371/journal.pbio.0030063openalex-snapshot
Recombination Difference between Sexes: A Role for Haploid Selection
inferredcites →https://doi.org/10.1371/journal.pgen.1002354openalex-snapshot
Genome-Wide Crossover Distribution in Arabidopsis thaliana Meiosis Reveals Sex-Specific Patterns along Chromosomes
inferredcites →https://doi.org/10.1371/journal.pgen.1003090openalex-snapshot
Genome-Wide Fine-Scale Recombination Rate Variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pone.0103645openalex-snapshot
Phylogeny Reconstruction and Hybrid Analysis of Populus (Salicaceae) Based on Nucleotide Sequences of Multiple Single-Copy Nuclear Genes and Plastid Fragments
inferredcites →https://doi.org/10.1371/journal.pone.0150692openalex-snapshot
Construction of High-Density Linkage Maps of Populus deltoides × P. simonii Using Restriction-Site Associated DNA Sequencing
inferredcites →https://doi.org/10.1371/journal.pone.0189256openalex-snapshot
BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species
inferredcites →https://doi.org/10.1534/genetics.115.183152openalex-snapshot
Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species
inferredcites →https://doi.org/10.1534/genetics.117.300063openalex-snapshot
The Recombination Landscape in Wild House Mice Inferred Using Population Genomic Data
inferredcites →https://doi.org/10.5281/zenodo.594205openalex-snapshot
jcvi: JCVI utility libraries

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inferred← citeshttps://doi.org/10.1007/978-981-97-8289-5_33openalex-snapshot
Genetic Markers, Genomics and Genetic Modification in Forest Trees: Current Status and Prospects
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