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Dynamics of Meiotic Sex Chromosome Inactivation and Pachytene Activation in Mice Spermatogenesis

https://doi.org/10.1101/665372
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Testis-Specific Murine Centrin, Cetn1: Genomic Characterization and Evidence for Retroposition of a Gene Encoding a Centrosome Protein
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Assessment of Spermatogenesis Through Staging of Seminiferous Tubules
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Differential rate of ribonucleic acid synthesis in the autosomes and sex chromosomes during male meiosis in the mouse
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Sex chromosomes, recombination, and chromatin conformation
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Inactivation or non-reactivation: what accounts better for the silence of sex chromosomes during mammalian male meiosis?
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Nuclear localization of PRDM9 and its role in meiotic chromatin modifications and homologous synapsis
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RPL10L Is Required for Male Meiotic Division by Compensating for RPL10 during Meiotic Sex Chromosome Inactivation in Mice
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SCML2 Establishes the Male Germline Epigenome through Regulation of Histone H2A Ubiquitination
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DAZL Limits Pluripotency, Differentiation, and Apoptosis in Developing Primordial Germ Cells
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Role of Src family kinases and N-Myc in spermatogonial stem cell proliferation
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Meiotic Silencing by Unpaired DNA
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The ADAM gene family: surface proteins with adhesion and protease activity
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Identification and characterization of ADAM32 with testis-predominant gene expression
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HemT-3, an alternative transcript of mouse gene HemT specific to male germ cells
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Recombinational DNA double-strand breaks in mice precede synapsis
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Spatial partitioning of the regulatory landscape of the X-inactivation centre
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Single-cell messenger RNA sequencing reveals rare intestinal cell types
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Structural organization of the inactive X chromosome in the mouse
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MEIOB exhibits single-stranded DNA-binding and exonuclease activities and is essential for meiotic recombination
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The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation
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Chromosome-wide nucleosome replacement and H3.3 incorporation during mammalian meiotic sex chromosome inactivation
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Validation of noise models for single-cell transcriptomics
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Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis
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Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis
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Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing
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Expression of green fluorescent protein under beta‐actin promoter in living spermatogenic cells of the mouse: stage‐specific regulation by FSH
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Stra8 and its inducer, retinoic acid, regulate meiotic initiation in both spermatogenesis and oogenesis in mice
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Genetic variation of melatonin productivity in laboratory mice under domestication
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Characterization and Expression of Mammalian Cyclin B3, a Prepachytene Meiotic Cyclin
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Principal Curves
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AmiGO: online access to ontology and annotation data
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QuickGO: a web-based tool for Gene Ontology searching
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Smad2, Smad3 and Smad4 cooperate with Sp1 to induce p15Ink4B transcription in response to TGF‐β
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The human X chromosome is enriched for germline genes expressed in premeiotic germ cells of both sexes
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STRING: a database of predicted functional associations between proteins
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TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes
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JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
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Multiple facets of histone variant H2AX: a DNA double-strand-break marker with several biological functions
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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
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TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis
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The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
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NRF1 coordinates with DNA methylation to regulate spermatogenesis
inferredcites →https://doi.org/10.1101/gad.1067003openalex-snapshot
Genomic targets of the human c-Myc protein
inferredcites →https://doi.org/10.1109/tpami.2016.2635657openalex-snapshot
Principal Graph and Structure Learning Based on Reversed Graph Embedding
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Estimating the Number of Clusters in a Data Set Via the Gap Statistic
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Histological and Histopathological Evaluation of the Testis
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The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race
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The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome
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Silencing of Unpaired Chromatin and Histone H2A Ubiquitination in Mammalian Meiosis
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Meiotic Silencing in Mammals
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Spermatogenesis: The Commitment to Meiosis
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Between a chicken and a grape: estimating the number of human genes
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Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
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Integrated transcriptome analysis of mouse spermatogenesis
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Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
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Differential expression analysis for sequence count data
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Transcriptome analysis of highly purified mouse spermatogenic cell populations: gene expression signatures switch from meiotic-to postmeiotic-related processes at pachytene stage
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CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
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Research Resource: The Dynamic Transcriptional Profile of Sertoli Cells During the Progression of Spermatogenesis
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DAZL is essential for stress granule formation implicated in germ cell survival upon heat stress
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Role of c-kit in mouse spermatogenesis: identification of spermatogonia as a specific site of c-kit expression and function
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SPO11 is required for sex-body formation, and Spo11 heterozygosity rescues the prophase arrest ofAtm-/- spermatocytes
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Quantitative Analysis of the Cellular Composition in Seminiferous Tubules in Normal and Genetically Modified Infertile Mice
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Hormad1 Mutation Disrupts Synaptonemal Complex Formation, Recombination, and Chromosome Segregation in Mammalian Meiosis
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X Chromosome Control of Meiotic Chromosome Synapsis in Mouse Inter-Subspecific Hybrids
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Polycomb Protein SCML2 Associates with USP7 and Counteracts Histone H2A Ubiquitination in the XY Chromatin during Male Meiosis
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Escape from X Inactivation Varies in Mouse Tissues
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Silencing of X-Linked MicroRNAs by Meiotic Sex Chromosome Inactivation
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RNF8 and SCML2 cooperate to regulate ubiquitination and H3K27 acetylation for escape gene activation on the sex chromosomes
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REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
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Leydig cell re-generation and expression of cell signaling molecules in the germ cell-free testis
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LDHC: The Ultimate Testis‐Specific Gene
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A Global Expression Switch Marks Pachytene Initiation during Mouse Male Meiosis
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Unified single-cell analysis of testis gene regulation and pathology in five mouse strains
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