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The evolution of realized niches within freshwater Synechococcus

https://doi.org/10.1101/678375
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Physiological diversity and niche adaptation in marine Synechococcus
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In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats
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The Paradox of the Plankton
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Search and clustering orders of magnitude faster than BLAST
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FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
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MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
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TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution
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Concluding Remarks
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Community assembly, coexistence and the environmental filtering metaphor
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Fine‐scale hydrological niche differentiation through the lens of multi‐species co‐occurrence models
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Microdiversity shapes the traits, niche space, and biogeography of microbial taxa
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Model‐based approaches to unconstrained ordination
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Seasonal and habitat-related distribution pattern of Synechococcus genotypes in Lake Constance
inferredcites →https://doi.org/10.1126/science.1153475openalex-snapshot
Microbial Biogeography: From Taxonomy to Traits
inferredcites →https://doi.org/10.1126/science.aac9323openalex-snapshot
Microbiomes in light of traits: A phylogenetic perspective
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Distribution-Based Clustering: Using Ecology To Refine the Operational Taxonomic Unit
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Dynamics of Heterotrophic Bacterial Assemblages within Synechococcus Cultures
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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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Microcolony Formation by Single-Cell Synechococcus Strains as a Fast Response to UV Radiation
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Fine-Scale Distribution Patterns of Synechococcus Ecological Diversity in Microbial Mats of Mushroom Spring, Yellowstone National Park
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The Abundance of Microcystin-Producing Genotypes Correlates Positively with Colony Size in Microcystis sp. and Determines Its Microcystin Net Production in Lake Wannsee
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Cyanobacterial Ecotypes in Different Optical Microenvironments of a 68°C Hot Spring Mat Community Revealed by 16S-23S rRNA Internal Transcribed Spacer Region Variation
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Effect of Temperature and Light on Growth of and Photosynthesis bySynechococcusIsolates Typical of Those Predominating in the Octopus Spring Microbial Mat Community of Yellowstone National Park
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A Guide to the Natural History of Freshwater Lake Bacteria
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Phylogenies and Community Ecology
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Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
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Bacteria dialog with Santa Rosalia: Are aggregations of cosmopolitan bacteria mainly explained by habitat filtering or by ecological interactions?
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Microbial Co-occurrence Relationships in the Human Microbiome
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Inferring Correlation Networks from Genomic Survey Data
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Genome composition and phylogeny of microbes predict their co-occurrence in the environment
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PHYLOGENETIC CLUSTERING AND OVERDISPERSION IN BACTERIAL COMMUNITIES
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A Gentle Introduction to Quantile Regression for Ecologists
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Classification and Regression Trees.
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Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes
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Close Link Between Harmful Cyanobacterial Dominance and Associated Bacterioplankton in a Tropical Eutrophic Reservoir
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Niche Separation Increases With Genetic Distance Among Bloom-Forming Cyanobacteria
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Picocyanobacterial community structure and space-time dynamics in the subalpine Lake Maggiore (N. Italy)
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Iron encrustations on filamentous algae colonized by Gallionella -related bacteria in a metal-polluted freshwater stream
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Comparative genomics ofSynechococcusand proposal of the new genusParasynechococcus
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