On the public citation graph

Enabling Semantic Queries Across Federated Bioinformatics Databases

https://doi.org/10.1101/686600
0 signed · 58 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-319-21542-6_7openalex-snapshot
FOWLA, A Federated Architecture for Ontologies
inferredcites →https://doi.org/10.1007/978-3-540-69828-9_12openalex-snapshot
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species
inferredcites →https://doi.org/10.1016/j.cageo.2018.03.004openalex-snapshot
Ontology-driven data integration and visualization for exploring regional geologic time and paleontological information
inferredcites →https://doi.org/10.1016/j.jbi.2008.01.008openalex-snapshot
State of the nation in data integration for bioinformatics
inferredcites →https://doi.org/10.1016/j.jbi.2008.03.004openalex-snapshot
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
inferredcites →https://doi.org/10.1016/j.websem.2017.12.005openalex-snapshot
LargeRDFBench: A billion triples benchmark for SPARQL endpoint federation
inferredcites →https://doi.org/10.1016/s0169-023x(97)00056-6openalex-snapshot
Knowledge engineering: Principles and methods
inferredcites →https://doi.org/10.1038/nbt1346openalex-snapshot
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
inferredcites →https://doi.org/10.1038/npre.2009.3193openalex-snapshot
UniProt in RDF: Tackling Data Integration and Distributed Annotation with the Semantic Web
inferredcites →https://doi.org/10.1038/npre.2009.3193.1openalex-snapshot
UniProt in RDF: Tackling Data Integration and Distributed Annotation with the Semantic Web
inferredcites →https://doi.org/10.1038/nrg.2018.4openalex-snapshot
Integrative omics for health and disease
inferredcites →https://doi.org/10.1038/nrg3868openalex-snapshot
Methods of integrating data to uncover genotype–phenotype interactions
inferredcites →https://doi.org/10.1093/bioinformatics/btq231openalex-snapshot
Semantic integration of data on transcriptional regulation
inferredcites →https://doi.org/10.1093/bioinformatics/btt765openalex-snapshot
The EBI RDF platform: linked open data for the life sciences
inferredcites →https://doi.org/10.1093/bioinformatics/btv064openalex-snapshot
SPARQL-enabled identifier conversion with Identifiers.org
inferredcites →https://doi.org/10.1093/bioinformatics/btw612openalex-snapshot
cMapper: gene-centric connectivity mapper for EBI-RDF platform
inferredcites →https://doi.org/10.1093/bioinformatics/btx542openalex-snapshot
Gearing up to handle the mosaic nature of life in the quest for orthologs
inferredcites →https://doi.org/10.1093/database/bax059openalex-snapshot
BioSearch: a semantic search engine for Bio2RDF
inferredcites →https://doi.org/10.1093/database/bay003openalex-snapshot
TISSUES 2.0: an integrative web resource on mammalian tissue expression
inferredcites →https://doi.org/10.1093/nar/gkh131openalex-snapshot
UniProt: the Universal Protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkr469openalex-snapshot
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
inferredcites →https://doi.org/10.1093/nar/gks1146openalex-snapshot
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013
inferredcites →https://doi.org/10.1093/nar/gkt1270openalex-snapshot
Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
inferredcites →https://doi.org/10.1093/nar/gkw1128openalex-snapshot
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
inferredcites →https://doi.org/10.1093/nar/gkx1019openalex-snapshot
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
inferredcites →https://doi.org/10.1093/nar/gkx1235openalex-snapshot
The 2018 Nucleic Acids Research database issue and the online molecular biology database collection
inferredcites →https://doi.org/10.1093/nar/gky092openalex-snapshot
UniProt: the universal protein knowledgebase
inferredcites →https://doi.org/10.1109/hpec.2016.7761636openalex-snapshot
The BigDAWG polystore system and architecture
inferredcites →https://doi.org/10.1109/icde.2018.00093openalex-snapshot
Seeping Semantics: Linking Datasets Using Word Embeddings for Data Discovery
inferredcites →https://doi.org/10.1145/2166896.2166906openalex-snapshot
Bioqueries
inferredcites →https://doi.org/10.1155/2008/420747openalex-snapshot
Genevestigator V3: A Reference Expression Database for the Meta‐Analysis of Transcriptomes
inferredcites →https://doi.org/10.1186/1471-2105-10-s10-s7openalex-snapshot
GoWeb: a semantic search engine for the life science web
inferredcites →https://doi.org/10.1186/1471-2105-10-s6-s7openalex-snapshot
The Mycoplasma conjunctivae genome sequencing, annotation and analysis
inferredcites →https://doi.org/10.1186/gb-2005-6-5-r46openalex-snapshot
Relations in biomedical ontologies
inferredcites →https://doi.org/10.1186/gb-2012-13-1-r5openalex-snapshot
Uberon, an integrative multi-species anatomy ontology
inferredcites →https://doi.org/10.1186/s12859-015-0559-3openalex-snapshot
KaBOB: ontology-based semantic integration of biomedical databases
inferredcites →https://doi.org/10.1186/s12859-017-1531-1openalex-snapshot
SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases
inferredcites →https://doi.org/10.1186/s12911-018-0636-4openalex-snapshot
An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival
inferredcites →https://doi.org/10.1186/s13326-016-0077-xopenalex-snapshot
The Orthology Ontology: development and applications
inferredcites →https://doi.org/10.1186/s13326-017-0118-0openalex-snapshot
BioFed: federated query processing over life sciences linked open data
inferredcites →https://doi.org/10.1186/s13326-017-0151-zopenalex-snapshot
PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets
inferredcites →https://doi.org/10.1186/s40709-015-0032-5openalex-snapshot
Data integration in biological research: an overview
inferredcites →https://doi.org/10.12688/f1000research.9973.2openalex-snapshot
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests
inferredcites →https://doi.org/10.1371/journal.pone.0053786openalex-snapshot
Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs
inferredcites →https://doi.org/10.1371/journal.pone.0116656openalex-snapshot
Ontology-Based Data Integration between Clinical and Research Systems
inferredcites →https://doi.org/10.1609/aimag.v26i1.1796openalex-snapshot
Automatic ontology matching using application semantics
inferredcites →https://doi.org/10.1609/aimag.v36i1.2565openalex-snapshot
Exploiting Semantics for Big Data Integration
inferredcites →https://doi.org/10.3233/sw-150208openalex-snapshot
Sparklis: An expressive query builder for SPARQL endpoints with guidance in natural language
inferredcites →https://doi.org/10.3233/sw-160217openalex-snapshot
Ontop: Answering SPARQL queries over relational databases
inferredcites →https://doi.org/10.3233/sw-180327openalex-snapshot
SpecINT: A framework for data integration over cheminformatics and bioinformatics RDF repositories
inferredcites →https://doi.org/10.5772/21654openalex-snapshot
Data Integration in Bioinformatics: Current Efforts and Challenges

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ymeth.2023.02.010openalex-snapshot
SGMFQP: An ontology-based Swine Gut Microbiota Federated Query Platform
inferred← citeshttps://doi.org/10.1093/nar/gkaa793openalex-snapshot
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals
inferred← citeshttps://doi.org/10.1145/3452411.3464448openalex-snapshot
INODE - Intelligence Open Data Exploration
inferred← citeshttps://doi.org/10.1145/3516431.3516436openalex-snapshot
INODE
inferred← citeshttps://doi.org/10.1162/dint_a_00172openalex-snapshot
FAIR Equivalency with Regulatory Framework for Digital Health in Ethiopia
inferred← citeshttps://doi.org/10.12688/f1000research.21027.1openalex-snapshot
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL
inferred← citeshttps://doi.org/10.21256/zhaw-23624openalex-snapshot
INODE : building an end-to-end data exploration system in practice
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.