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Y-chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ece3.3132openalex-snapshot
Characterization of natural variation in North American Atlantic Salmon populations (Salmonidae: Salmo salar) at a locus with a major effect on sea age
inferredcites →https://doi.org/10.1002/ece3.337openalex-snapshot
Contemporary ocean warming and freshwater conditions are related to later sea age at maturity in Atlantic salmon spawning in Norwegian rivers
inferredcites →https://doi.org/10.1002/ece3.869openalex-snapshot
Sneaker “jack” males outcompete dominant “hooknose” males under sperm competition in C hinook salmon ( O ncorhynchus tshawytscha)
inferredcites →https://doi.org/10.1002/nafm.10186openalex-snapshot
Winter-Rearing Temperature Affects Growth Profiles, Age of Maturation, and Smolt-to-Adult Returns for Yearling Summer Chinook Salmon in the Upper Columbia River Basin
inferredcites →https://doi.org/10.1007/978-1-4684-4652-4_1openalex-snapshot
Tetraploidy and the Evolution of Salmonid Fishes
inferredcites →https://doi.org/10.1007/pl00006304openalex-snapshot
Extensive Direct-Tandem Organization of a Long Repeat DNA Sequence on the Y Chromosome of Chinook Salmon (Oncorhynchus tshawytscha)
inferredcites →https://doi.org/10.1016/0044-8486(84)90147-9openalex-snapshot
Response to individual selection for age at sexual maturity in Atlantic salmon
inferredcites →https://doi.org/10.1016/0044-8486(88)90233-5openalex-snapshot
Heritability of age at spawning for rainbow trout
inferredcites →https://doi.org/10.1016/0044-8486(90)90121-3openalex-snapshot
Suppression of maturation in male Atlantic salmon (Salmo salar L.) parr by reduction in feeding and growth during spring months
inferredcites →https://doi.org/10.1016/j.aquaculture.2018.09.025openalex-snapshot
Differences in genetic architecture between continents at a major locus previously associated with sea age at sexual maturity in European Atlantic salmon
inferredcites →https://doi.org/10.1016/j.margen.2017.07.004openalex-snapshot
Mapping of quantitative trait loci for temporal growth and age at maturity in coho salmon: Evidence for genotype-by-sex interactions
inferredcites →https://doi.org/10.1038/hdy.1994.21openalex-snapshot
Genetic, environmental and interaction effects on the incidence of jacking in Oncorhynchus tshawytscha (chinook salmon)
inferredcites →https://doi.org/10.1038/nature12489openalex-snapshot
Life history trade-offs at a single locus maintain sexually selected genetic variation
inferredcites →https://doi.org/10.1038/nature16062openalex-snapshot
Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon
inferredcites →https://doi.org/10.1038/ng.3443openalex-snapshot
A supergene determines highly divergent male reproductive morphs in the ruff
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/s41559-019-1044-6openalex-snapshot
Sex-dependent dominance maintains migration supergene in rainbow trout
inferredcites →https://doi.org/10.1038/s41598-018-23984-1openalex-snapshot
Evolution of Sex Determination Loci in Atlantic Salmon
inferredcites →https://doi.org/10.1038/sj.hdy.6800141openalex-snapshot
Heritability and Y-chromosome influence in the jack male life history of chinook salmon (Oncorhynchus tshawytscha)
inferredcites →https://doi.org/10.1038/sj.hdy.6800483openalex-snapshot
Linkage disequilibrium between the pseudoautosomal PEPB-1 locus and the sex-determining region of chinook salmon
inferredcites →https://doi.org/10.1080/00028487.2011.618351openalex-snapshot
Alternative Male Reproductive Phenotypes Affect Offspring Growth Rates in Chinook Salmon
inferredcites →https://doi.org/10.1080/19425120.2017.1353563openalex-snapshot
Evidence that Marine Temperatures Influence Growth and Maturation of Western Alaskan Chinook Salmon
inferredcites →https://doi.org/10.1086/283774openalex-snapshot
Variation in Age and Size at Maturity of the Slider Turtle (Pseudemys scripta)
inferredcites →https://doi.org/10.1086/342898openalex-snapshot
Sex Chromosomes and Sexual Selection in Poeciliid Fishes
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btx469openalex-snapshot
ggseqlogo: a versatile R package for drawing sequence logos
inferredcites →https://doi.org/10.1098/rspb.2014.0012openalex-snapshot
Rapid parallel evolution of standing variation in a single, complex, genomic region is associated with life history in steelhead/rainbow trout
inferredcites →https://doi.org/10.1098/rspb.2015.3064openalex-snapshot
Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing
inferredcites →https://doi.org/10.1098/rspb.2018.0935openalex-snapshot
Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon
inferredcites →https://doi.org/10.1111/1365-2664.12341openalex-snapshot
Performance of salmon fishery portfolios across western N orth A merica
inferredcites →https://doi.org/10.1111/1755-0998.12357openalex-snapshot
Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing
inferredcites →https://doi.org/10.1111/1755-0998.12369openalex-snapshot
Linkage disequilibrium network analysis ( LD na) gives a global view of chromosomal inversions, local adaptation and geographic structure
inferredcites →https://doi.org/10.1111/1755-0998.12613openalex-snapshot
Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping‐by‐sequencing data from natural populations
inferredcites →https://doi.org/10.1111/1755-0998.12763openalex-snapshot
Resolving allele dosage in duplicated loci using genotyping‐by‐sequencing data: A path forward for population genetic analysis
inferredcites →https://doi.org/10.1111/1755-0998.12784openalex-snapshot
Utility of pooled sequencing for association mapping in nonmodel organisms
inferredcites →https://doi.org/10.1111/eva.12032openalex-snapshot
The sexually dimorphic on the Y‐chromosome gene (sdY) is a conserved male‐specific Y‐chromosome sequence in many salmonids
inferredcites →https://doi.org/10.1111/eva.12123openalex-snapshot
Evolution of age and length at maturation of A laskan salmon under size‐selective harvest
inferredcites →https://doi.org/10.1111/eva.12599openalex-snapshot
Genomewide association analyses of fitness traits in captive‐reared Chinook salmon: Applications in evaluating conservation strategies
inferredcites →https://doi.org/10.1111/eva.12687openalex-snapshot
Genomics and conservation units: The genetic basis of adult migration timing in Pacific salmonids
inferredcites →https://doi.org/10.1111/eva.12709openalex-snapshot
Recruitment variation disrupts the stability of alternative life histories in an exploited salmon population
inferredcites →https://doi.org/10.1111/evo.12663openalex-snapshot
Adaptive divergence in the monkey flowerMimulus guttatusis maintained by a chromosomal inversion
inferredcites →https://doi.org/10.1111/faf.12272openalex-snapshot
Demographic changes in Chinook salmon across the Northeast Pacific Ocean
inferredcites →https://doi.org/10.1111/j.0014-3820.2004.tb01580.xopenalex-snapshot
INFLUENCE OF INDIVIDUAL BODY SIZE AND VARIABLE THRESHOLDS ON THE INCIDENCE OF A SNEAKER MALE REPRODUCTIVE TACTIC IN ATLANTIC SALMON
inferredcites →https://doi.org/10.1111/j.0014-3820.2004.tb01654.xopenalex-snapshot
LIFE-HISTORY DIVERGENCE IN CHINOOK SALMON: HISTORIC CONTINGENCY AND PARALLEL EVOLUTION
inferredcites →https://doi.org/10.1111/j.1600-0706.2011.20131.xopenalex-snapshot
The ecology and evolution of partial migration
inferredcites →https://doi.org/10.1111/j.1752-4571.2008.00020.xopenalex-snapshot
Evolutionary consequences of fishing and their implications for salmon
inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02968.xopenalex-snapshot
Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies
inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot
Stacks: an analysis tool set for population genomics
inferredcites →https://doi.org/10.1126/sciadv.1603198openalex-snapshot
The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation
inferredcites →https://doi.org/10.1139/cjfas-2012-0135openalex-snapshot
Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography
inferredcites →https://doi.org/10.1139/cjfas-2013-0502openalex-snapshot
Single-nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing improve genetic stock identification of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska
inferredcites →https://doi.org/10.1139/cjfas-2018-0490openalex-snapshot
Pop-up satellite archival tags reveal evidence of intense predation on large immature Chinook salmon (Oncorhynchus tshawytscha) in the North Pacific Ocean
inferredcites →https://doi.org/10.1139/cjfas-2019-0067openalex-snapshot
Dense SNP panels resolve closely related Chinook salmon populations
inferredcites →https://doi.org/10.1139/f10-112openalex-snapshot
Mating success of alternative male phenotypes and evidence for frequency-dependent selection in Chinook salmon, Oncorhynchus tshawytscha
inferredcites →https://doi.org/10.1139/f84-057openalex-snapshot
Inter- and Intra-Population Variation in the Fecundity of Chinook Salmon (Oncorhynchus tshawytscha) and its Relevance to Life History Theory
inferredcites →https://doi.org/10.1159/000223073openalex-snapshot
The Sex Determining Loci and Sex Chromosomes in the Family Salmonidae
inferredcites →https://doi.org/10.1186/1471-2105-9-253openalex-snapshot
BatchPrimer3: A high throughput web application for PCR and sequencing primer design
inferredcites →https://doi.org/10.1186/1471-2164-12-615openalex-snapshot
A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1371/journal.pgen.1005628openalex-snapshot
The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males
inferredcites →https://doi.org/10.1371/journal.pone.0195461openalex-snapshot
Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
inferredcites →https://doi.org/10.1534/g3.111.000240openalex-snapshot
Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
inferredcites →https://doi.org/10.1534/g3.113.008078openalex-snapshot
Assignment of Chinook Salmon (Oncorhynchus tshawytscha) Linkage Groups to Specific Chromosomes Reveals a Karyotype with Multiple Rearrangements of the Chromosome Arms of Rainbow Trout (Oncorhynchus mykiss)
inferredcites →https://doi.org/10.1534/g3.119.400972openalex-snapshot
Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon
inferredcites →https://doi.org/10.1534/genetics.105.051227openalex-snapshot
Pleiotropic Quantitative Trait Loci Contribute to Population Divergence in Traits Associated With Life-History Variation in Mimulus guttatus
inferredcites →https://doi.org/10.1577/t05-200.1openalex-snapshot
Growth Modulation Alters the Incidence of Early Male Maturation and Physiological Development of Hatchery‐Reared Spring Chinook Salmon: A Comparison with Wild Fish
inferredcites →https://doi.org/10.1577/t06-071.1openalex-snapshot
Pacific Rim Population Structure of Chinook Salmon as Determined from Microsatellite Analysis
inferredcites →https://doi.org/10.2307/2409384openalex-snapshot
Male Alternative Reproductive Strategies in a Marine Isopod Crustacean (Paracerceis sculpta): The Use of Genetic Markers to Measure Differences in Fertilization Success Among α-, β-, and γ-Males
inferredcites →https://doi.org/10.32614/cran.package.gplotsopenalex-snapshot
gplots: Various R Programming Tools for Plotting Data
inferredcites →https://doi.org/10.3354/meps335285openalex-snapshot
Maturation responses of salmonids to changing developmental opportunities
inferredcites →https://doi.org/10.47886/9781934874455.ch6openalex-snapshot
The Ocean Ecology of Pacific Salmon and Trout
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1111/mec.15712openalex-snapshot
A mobile sex‐determining region, male‐specific haplotypes and rearing environment influence age at maturity in Chinook salmon
inferred← citeshttps://doi.org/10.1111/mec.15822openalex-snapshot
Heterogeneous genetic basis of age at maturity in salmonid fishes
inferred← citeshttps://doi.org/10.1146/annurev-animal-021419-083617openalex-snapshot
Conservation and Management of Salmon in the Age of Genomics
inferred← citeshttps://doi.org/10.1534/g3.119.400972openalex-snapshot
Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon
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