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Parallel Mosaic Speciation via Mutation-order and Ecological Divergence

https://doi.org/10.1101/692673
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Environmentally induced development costs underlie fitness tradeoffs
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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
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201-P Use of the Fluidigm® access Array™ system provides simplified amplicon library preparation in next generation sequencing for high throughput HLA genotyping
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Parallel speciation in Astyanax cave fish (Teleostei) in Northern Mexico
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The hitch-hiking effect of a favourable gene
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Host-plant adaptation drives the parallel evolution of reproductive isolation
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Incipient adaptive radiation of New Zealand and Australian Microseris (Asteraceae): an amplified fragment length polymorphism (AFLP) study
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
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VarScan: variant detection in massively parallel sequencing of individual and pooled samples
inferredcites →https://doi.org/10.1093/genetics/116.1.153openalex-snapshot
A Test of Neutral Molecular Evolution Based on Nucleotide Data
inferredcites →https://doi.org/10.1093/genetics/133.3.693openalex-snapshot
Statistical tests of neutrality of mutations.
inferredcites →https://doi.org/10.1093/genetics/164.4.1567openalex-snapshot
Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies
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Bayesian Inference of Species Trees from Multilocus Data
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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Repeated evolution of reproductive isolation in a marine snail: unveiling mechanisms of speciation
inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
inferredcites →https://doi.org/10.1111/evo.12136openalex-snapshot
CONVERGENCE AND DIVERGENCE DURING THE ADAPTATION TO SIMILAR ENVIRONMENTS BY AN AUSTRALIAN GROUNDSEL
inferredcites →https://doi.org/10.1111/evo.12936openalex-snapshot
Immigrant inviability produces a strong barrier to gene flow between parapatric ecotypes of Senecio lautus
inferredcites →https://doi.org/10.1111/evo.12994openalex-snapshot
Divergent natural selection drives the evolution of reproductive isolation in an Australian wildflower
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00360.xopenalex-snapshot
COMPONENTS OF REPRODUCTIVE ISOLATION BETWEEN THE MONKEYFLOWERS MIMULUS LEWISII AND M. CARDINALIS (PHRYMACEAE)
inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb00995.xopenalex-snapshot
PARALLEL EVOLUTION OF SEXUAL ISOLATION IN STICKLEBACKS
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05754.xopenalex-snapshot
Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program structure
inferredcites →https://doi.org/10.1111/j.1469-8137.2007.02077.xopenalex-snapshot
Parallel evolution of dwarf ecotypes in the forest tree Eucalyptus globulus
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03005.xopenalex-snapshot
PRG matic : an efficient pipeline for collating genome‐enriched second‐generation sequencing data using a ‘provisional‐reference genome’
inferredcites →https://doi.org/10.1111/mec.12311openalex-snapshot
Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex
inferredcites →https://doi.org/10.1111/nph.12779openalex-snapshot
Strong extrinsic reproductive isolation between parapatric populations of an Australian groundsel
inferredcites →https://doi.org/10.1126/science.1160006openalex-snapshot
Evidence for Ecological Speciation and Its Alternative
inferredcites →https://doi.org/10.1155/2012/939862openalex-snapshot
Parallel Ecological Speciation in Plants?
inferredcites →https://doi.org/10.1186/1471-2105-11-341openalex-snapshot
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
inferredcites →https://doi.org/10.1186/1471-2148-6-36openalex-snapshot
A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects.
inferredcites →https://doi.org/10.2307/2656926openalex-snapshot
Chloroplast DNA evidence for the evolution of Microseris (Asteraceae) in Australia and New Zealand after long‐distance dispersal from western North America
inferredcites →https://doi.org/10.5962/p.291560openalex-snapshot
Taxonomic studies of Australian Senecio (Asteraceae) 5. The S. pinnatifolius/S. lautus complex

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/molbev/msab207openalex-snapshot
Highly Replicated Evolution of Parapatric Ecotypes
inferred← citeshttps://doi.org/10.1098/rspb.2022.0422openalex-snapshot
Heterosis counteracts hybrid breakdown to forestall speciation by parallel natural selection
inferred← citeshttps://doi.org/10.1101/cshperspect.a041432openalex-snapshot
Coupling of Barriers to Gene Exchange: Causes and Consequences
inferred← citeshttps://doi.org/10.1111/evo.14387openalex-snapshot
Phenotypic and genotypic parallel evolution in parapatric ecotypes of Senecio
inferred← citeshttps://doi.org/10.1146/annurev-arplant-071221-090809openalex-snapshot
Replicated Evolution in Plants
inferred← citeshttps://doi.org/10.7554/elife.69016openalex-snapshot
The genomic consequences of hybridization
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