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Unravelling native plant resistomes – The Sphagnum microbiome harbours versatile and novel antimicrobial resistance genes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ecy.1670openalex-snapshot
Low abundant soil bacteria can be metabolically versatile and fast growing
inferredcites →https://doi.org/10.1002/mbo3.104openalex-snapshot
Identification of a metagenomic gene cluster containing a new class A beta‐lactamase and toxin‐antitoxin systems
inferredcites →https://doi.org/10.1016/j.tplants.2019.02.010openalex-snapshot
Antibiotic Resistomes in Plant Microbiomes
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s1473-3099(17)30396-1openalex-snapshot
Estimates of the global, regional, and national morbidity, mortality, and aetiologies of lower respiratory tract infections in 195 countries: a systematic analysis for the Global Burden of Disease Study 2015
inferredcites →https://doi.org/10.1016/s1473-3099(18)30310-4openalex-snapshot
Estimates of the global, regional, and national morbidity, mortality, and aetiologies of lower respiratory infections in 195 countries, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016
inferredcites →https://doi.org/10.1038/ismej.2007.58openalex-snapshot
High specificity but contrasting biodiversity of Sphagnum -associated bacterial and plant communities in bog ecosystems independent of the geographical region
inferredcites →https://doi.org/10.1038/ismej.2008.86openalex-snapshot
Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil
inferredcites →https://doi.org/10.1038/ismej.2011.151openalex-snapshot
Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle
inferredcites →https://doi.org/10.1038/ismej.2017.82openalex-snapshot
Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy
inferredcites →https://doi.org/10.1038/nature13377openalex-snapshot
Bacterial phylogeny structures soil resistomes across habitats
inferredcites →https://doi.org/10.1038/nature16192openalex-snapshot
Functional overlap of the Arabidopsis leaf and root microbiota
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/nrmicro1614openalex-snapshot
The antibiotic resistome: the nexus of chemical and genetic diversity
inferredcites →https://doi.org/10.1038/nrmicro2312openalex-snapshot
Call of the wild: antibiotic resistance genes in natural environments
inferredcites →https://doi.org/10.1038/nrmicro3439openalex-snapshot
Tackling antibiotic resistance: the environmental framework
inferredcites →https://doi.org/10.1038/s41467-019-08864-0openalex-snapshot
Man-made microbial resistances in built environments
inferredcites →https://doi.org/10.1046/j.1469-0691.2003.00564.xopenalex-snapshot
Treatment of epidemic and pandemic influenza with neuraminidase and M2 proton channel inhibitors
inferredcites →https://doi.org/10.1080/01490450902889072openalex-snapshot
Co-Selection of Mercury and Antibiotic Resistance in Sphagnum Core Samples Dating Back 2000 Years
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1089/mdr.2011.0214openalex-snapshot
Imipenem Resistance in Klebsiella pneumoniae Is Associated to the Combination of Plasmid-Mediated CMY-4 AmpC β-Lactamase and Loss of an Outer Membrane Protein
inferredcites →https://doi.org/10.1089/omi.2015.0191openalex-snapshot
Antibiotic Resistome: Improving Detection and Quantification Accuracy for Comparative Metagenomics
inferredcites →https://doi.org/10.1093/bioinformatics/bts503openalex-snapshot
Qualimap: evaluating next-generation sequencing alignment data
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/cid/ciw475openalex-snapshot
World Health Organization Ranking of Antimicrobials According to Their Importance in Human Medicine: A Critical Step for Developing Risk Management Strategies to Control Antimicrobial Resistance From Food Animal Production
inferredcites →https://doi.org/10.1093/femsec/fiw023openalex-snapshot
Metagenomic profiles of antibiotic resistance genes in paddy soils from South China
inferredcites →https://doi.org/10.1093/femsec/fiw034openalex-snapshot
Mechanism of biological denitrification inhibition: procyanidins induce an allosteric transition of the membrane-bound nitrate reductase through membrane alteration
inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/oso/9780195135848.001.0001openalex-snapshot
Molecular Evolution and Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1097/mcp.0000000000000517openalex-snapshot
Emerging Gram-negative bacteria
inferredcites →https://doi.org/10.1099/00207713-50-2-887openalex-snapshot
Description of Pandoraea gen. nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov.
inferredcites →https://doi.org/10.1099/ijs.0.65142-0openalex-snapshot
Burkholderia bryophila sp. nov. and Burkholderia megapolitana sp. nov., moss-associated species with antifungal and plant-growth-promoting properties
inferredcites →https://doi.org/10.1099/ijsem.0.001794openalex-snapshot
Rouxiella badensis sp. nov. and Rouxiella silvae sp. nov. isolated from peat bog soil and emendation description of the genus Rouxiella
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00891.xopenalex-snapshot
The rhizosphere as a reservoir for opportunistic human pathogenic bacteria
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01391.xopenalex-snapshot
Investigations of the structure and function of bacterial communities associated with Sphagnum mosses
inferredcites →https://doi.org/10.1111/j.1469-0691.2007.01935.xopenalex-snapshot
EUCAST Definitive Document EDef 7.1: method for the determination of broth dilution MICs of antifungal agents for fermentative yeasts
inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00323.xopenalex-snapshot
The bryophyte genus Sphagnum is a reservoir for powerful and extraordinary antagonists and potentially facultative human pathogens
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00157.xopenalex-snapshot
Functional role of bacterial multidrug efflux pumps in microbial natural ecosystems
inferredcites →https://doi.org/10.1111/mec.12885openalex-snapshot
The S phagnum microbiome supports bog ecosystem functioning under extreme conditions
inferredcites →https://doi.org/10.1111/mec.13342openalex-snapshot
The core microbiome bonds the Alpine bog vegetation to a transkingdom metacommunity
inferredcites →https://doi.org/10.1111/nph.13993openalex-snapshot
The Sphagnum microbiome: new insights from an ancient plant lineage
inferredcites →https://doi.org/10.1126/science.1120800openalex-snapshot
Sampling the Antibiotic Resistome
inferredcites →https://doi.org/10.1126/science.1159483openalex-snapshot
Antibiotics and Antibiotic Resistance Genes in Natural Environments
inferredcites →https://doi.org/10.1128/aac.00419-13openalex-snapshot
The Comprehensive Antibiotic Resistance Database
inferredcites →https://doi.org/10.1128/aac.34.11.2200openalex-snapshot
Novel plasmid-mediated beta-lactamase (MIR-1) conferring resistance to oxyimino- and alpha-methoxy beta-lactams in clinical isolates of Klebsiella pneumoniae
inferredcites →https://doi.org/10.1128/aac.40.2.509openalex-snapshot
Sequences of beta-lactamase genes encoding CTX-M-1 (MEN-1) and CTX-M-2 and relationship of their amino acid sequences with those of other beta-lactamases
inferredcites →https://doi.org/10.1128/aac.50.4.1330-1335.2006openalex-snapshot
Novel Carbapenem-Hydrolyzing Oxacillinase OXA-62 from Pandoraea pnomenusa
inferredcites →https://doi.org/10.1128/aem.02641-16openalex-snapshot
Discovery of Polyesterases from Moss-Associated Microorganisms
inferredcites →https://doi.org/10.1128/cmr.00017-11openalex-snapshot
Serratia Infections: from Military Experiments to Current Practice
inferredcites →https://doi.org/10.1128/cmr.00019-15openalex-snapshot
A Structure-Based Classification of Class A β-Lactamases, a Broadly Diverse Family of Enzymes
inferredcites →https://doi.org/10.1134/s0026261706010164openalex-snapshot
Bacteria of the genus Burkholderia as a typical component of the microbial community of Sphagnum peat bogs
inferredcites →https://doi.org/10.1146/annurev-environ-110615-085520openalex-snapshot
Peatlands and Global Change: Response and Resilience
inferredcites →https://doi.org/10.1186/s40168-015-0145-yopenalex-snapshot
Human milk microbiota profiles in relation to birthing method, gestation and infant gender
inferredcites →https://doi.org/10.1186/s40168-016-0199-5openalex-snapshot
The structure and diversity of human, animal and environmental resistomes
inferredcites →https://doi.org/10.1186/s40168-018-0424-5openalex-snapshot
A reservoir of ‘historical’ antibiotic resistance genes in remote pristine Antarctic soils
inferredcites →https://doi.org/10.1186/s40168-019-0624-7openalex-snapshot
Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.)
inferredcites →https://doi.org/10.3389/fgene.2014.00429openalex-snapshot
Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species
inferredcites →https://doi.org/10.3389/fmicb.2011.00275openalex-snapshot
Similar Diversity of Alphaproteobacteria and Nitrogenase Gene Amplicons on Two Related Sphagnum Mosses
inferredcites →https://doi.org/10.3389/fmicb.2013.00394openalex-snapshot
Vertical transmission explains the specific Burkholderia pattern in Sphagnum mosses at multi-geographic scale
inferredcites →https://doi.org/10.3389/fmicb.2017.00011openalex-snapshot
A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds
inferredcites →https://doi.org/10.3389/fmicb.2018.02730openalex-snapshot
K-Selection as Microbial Community Management Strategy: A Method for Improved Viability of Larvae in Aquaculture
inferredcites →https://doi.org/10.3389/fmicb.2019.00725openalex-snapshot
Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/9781119762621.ch34openalex-snapshot
Beneficial Microbes for Agriculture
inferred← citeshttps://doi.org/10.1016/j.ese.2020.100061openalex-snapshot
Overhauling the assessment of agrochemical-driven interferences with microbial communities for improved global ecosystem integrity
inferred← citeshttps://doi.org/10.1111/gcb.16651openalex-snapshot
Climate drivers alter nitrogen availability in surface peat and decouple N2 fixation from CH4 oxidation in the Sphagnum moss microbiome
inferred← citeshttps://doi.org/10.1186/s40168-020-00875-0openalex-snapshot
Microbiome definition re-visited: old concepts and new challenges
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