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Ultraconserved non-coding DNA within insect phyla

https://doi.org/10.1101/696005
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular evolution inDrosophila and the higher diptera
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Wnt genes
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Regulation of temporal identities during Drosophila neuroblast lineage development
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A High-Resolution Enhancer Atlas of the Developing Telencephalon
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Ultraconserved Enhancers Are Required for Normal Development
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Social Immunity
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Shadow Enhancers Foster Robustness of Drosophila Gastrulation
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Evolutionary History of the Hymenoptera
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Global Programmed Switch in Neural Daughter Cell Proliferation Mode Triggered by a Temporal Gene Cascade
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Conserved sequence block clustering and flanking inter-cluster flexibility delineate enhancers that regulate nerfin-1 expression during Drosophila CNS development
inferredcites →https://doi.org/10.1016/j.gep.2012.05.004openalex-snapshot
The cis-regulatory dynamics of the Drosophila CNS determinant castor are controlled by multiple sub-pattern enhancers
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The Neural Substrate of Spectral Preference in Drosophila
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The enhanceosome
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Redeployment of a conserved gene regulatory network during Aedes aegypti development
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Analysis of the complete mitochondrial DNA from Anopheles funestus: An improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution
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Basic Local Alignment Search Tool
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Conserved noncoding sequences are reliable guides to regulatory elements
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Comparative analyses of multi-species sequences from targeted genomic regions
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In vivo enhancer analysis of human conserved non-coding sequences
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Dscam2 mediates axonal tiling in the Drosophila visual system
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Genomic views of distant-acting enhancers
inferredcites →https://doi.org/10.1038/ng.2007.55openalex-snapshot
Ultraconservation identifies a small subset of extremely constrained developmental enhancers
inferredcites →https://doi.org/10.1038/nmeth0705-535openalex-snapshot
Computational screening of conserved genomic DNA in search of functional noncoding elements
inferredcites →https://doi.org/10.1073/pnas.0506915102openalex-snapshot
EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA
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Comparative genomics allows the discovery of cis -regulatory elements in mosquitoes
inferredcites →https://doi.org/10.1093/bioinformatics/btl546openalex-snapshot
ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes
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Integrative Genomics Reveals the Genetics and Evolution of the Honey Bee’s Social Immune System
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Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
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BLAT —The BLAST -Like Alignment Tool
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Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing
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The Genome Sequence of the Malaria Mosquito Anopheles gambiae
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Genome Sequence of Aedes aegypti , a Major Arbovirus Vector
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Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
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Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis
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Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers
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An arthropod cis-regulatory element functioning in sensory organ precursor development dates back to the Cambrian
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Culex genome is not just another genome for comparative genomics
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Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophilagenome
inferredcites →https://doi.org/10.1186/gb-2007-8-5-r75openalex-snapshot
cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers
inferredcites →https://doi.org/10.1186/s12864-015-1897-2openalex-snapshot
cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers
inferredcites →https://doi.org/10.1242/dev.095430openalex-snapshot
Development of five digits is controlled by a bipartite long-range cis -regulator
inferredcites →https://doi.org/10.1371/journal.pgen.1000106openalex-snapshot
Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
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Early Evolution of Conserved Regulatory Sequences Associated with Development in Vertebrates
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Role of Architecture in the Function and Specificity of Two Notch-Regulated Transcriptional Enhancer Modules
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cis-Regulatory Complexity within a Large Non-Coding Region in the Drosophila Genome
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Multigene Phylogenetics Reveals Temporal Diversification of Major African Malaria Vectors
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