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ReCappable Seq: Comprehensive Determination of Transcription Start Sites derived from all RNA polymerases
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1 of the 55 references listed on this page is in the Retraction Watch database as retracted (export 2026-11-04): 10.1038/nrc2539 (notice 2012-10-01).
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/wrna.1123openalex-snapshot
The Bin3 RNA methyltransferase targets 7SK RNA to control transcription and translation
inferredcites →https://doi.org/10.1002/wrna.1287openalex-snapshot
Controlling translation via modulation of tRNA levels
inferredcites →https://doi.org/10.1006/geno.1996.0567openalex-snapshot
High-Efficiency Full-Length cDNA Cloning by Biotinylated CAP Trapper
inferredcites →https://doi.org/10.1007/978-1-4939-0805-9_7openalex-snapshot
Detecting Expressed Genes Using CAGE
inferredcites →https://doi.org/10.1007/978-1-4939-8657-6_13openalex-snapshot
NanoCAGE-XL: An Approach to High-Confidence Transcription Start Site Sequencing
inferredcites →https://doi.org/10.1007/s00109-018-1693-yopenalex-snapshot
Transfer RNA-derived fragments and tRNA halves: biogenesis, biological functions and their roles in diseases
inferredcites →https://doi.org/10.1016/0378-1119(94)90802-8openalex-snapshot
Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
inferredcites →https://doi.org/10.1016/j.cmet.2013.03.006openalex-snapshot
MTERF1 Binds mtDNA to Prevent Transcriptional Interference at the Light-Strand Promoter but Is Dispensable for rRNA Gene Transcription Regulation
inferredcites →https://doi.org/10.1016/j.molcel.2007.08.001openalex-snapshot
Transcriptional Networking Cap-tures the 7SK RNA 5′-γ-Methyltransferase
inferredcites →https://doi.org/10.1016/j.mrrev.2016.03.005openalex-snapshot
The many faces of histone H3K79 methylation
inferredcites →https://doi.org/10.1016/j.ydbio.2009.06.012openalex-snapshot
Nucleosome positioning: How is it established, and why does it matter?
inferredcites →https://doi.org/10.1016/j.ygeno.2010.12.001openalex-snapshot
A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes
inferredcites →https://doi.org/10.1016/s0021-9258(17)30635-xopenalex-snapshot
Characterization of U6 small nuclear RNA cap-specific antibodies. Identification of gamma-monomethyl-GTP cap structure in 7SK and several other human small RNAs.
inferredcites →https://doi.org/10.1038/nature08756openalex-snapshot
The primary transcriptome of the major human pathogen Helicobacter pylori
inferredcites →https://doi.org/10.1038/ncomms13783openalex-snapshot
Global repositioning of transcription start sites in a plant-fermenting bacterium
inferredcites →https://doi.org/10.1038/nmeth0306-211openalex-snapshot
CAGE: cap analysis of gene expression
inferredcites →https://doi.org/10.1038/nrc2539openalex-snapshot
Non-coding RNA production by RNA polymerase III is implicated in cancer
inferredcites →https://doi.org/10.1038/nrg3001openalex-snapshot
Transcription by RNA polymerase III: more complex than we thought
inferredcites →https://doi.org/10.1038/nrm3274openalex-snapshot
Understanding the language of Lys36 methylation at histone H3
inferredcites →https://doi.org/10.1038/nsmb.1801openalex-snapshot
Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors
inferredcites →https://doi.org/10.1038/nsmb.1806openalex-snapshot
Pol II and its associated epigenetic marks are present at Pol III–transcribed noncoding RNA genes
inferredcites →https://doi.org/10.1038/s41467-018-05997-6openalex-snapshot
SMRT-Cappable-seq reveals complex operon variants in bacteria
inferredcites →https://doi.org/10.1038/s41592-018-0014-2openalex-snapshot
Comprehensive comparative analysis of 5′-end RNA-sequencing methods
inferredcites →https://doi.org/10.1038/s41598-019-45083-5openalex-snapshot
The yeast scavenger decapping enzyme DcpS and its application for in vitro RNA recapping
inferredcites →https://doi.org/10.1038/srep41947openalex-snapshot
Nucleosome Positioning and NDR Structure at RNA Polymerase III Promoters
inferredcites →https://doi.org/10.1042/ebc20170102openalex-snapshot
Mitochondrial transcription and translation: overview
inferredcites →https://doi.org/10.1073/pnas.79.10.3092openalex-snapshot
Human ribosomal RNA gene: nucleotide sequence of the transcription initiation region and comparison of three mammalian genes.
inferredcites →https://doi.org/10.1073/pnas.85.23.8885openalex-snapshot
Additional low-abundance human small nuclear ribonucleoproteins: U11, U12, etc.
inferredcites →https://doi.org/10.1073/pnas.86.21.8280openalex-snapshot
Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA.
inferredcites →https://doi.org/10.1074/jbc.c110.128918openalex-snapshot
Human Mitochondrial Transcription Revisited
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/bts356openalex-snapshot
RSeQC: quality control of RNA-seq experiments
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/emboj/cdf448openalex-snapshot
The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases
inferredcites →https://doi.org/10.1093/jmcb/mjz049openalex-snapshot
POLIII-derived non-coding RNAs acting as scaffolds and decoys
inferredcites →https://doi.org/10.1093/nar/19.17.4669openalex-snapshot
SP6 RNA polymerase stutters when initiating from an AAA… sequence
inferredcites →https://doi.org/10.1093/nar/gkv1309openalex-snapshot
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
inferredcites →https://doi.org/10.1093/nar/gkw257openalex-snapshot
deepTools2: a next generation web server for deep-sequencing data analysis
inferredcites →https://doi.org/10.1093/nar/gkx1081openalex-snapshot
The Encyclopedia of DNA elements (ENCODE): data portal update
inferredcites →https://doi.org/10.1093/nar/gkx1165openalex-snapshot
Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues
inferredcites →https://doi.org/10.1093/nar/gkz751openalex-snapshot
Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA
inferredcites →https://doi.org/10.1101/gr.097857.109openalex-snapshot
Detection of nonneutral substitution rates on mammalian phylogenies
inferredcites →https://doi.org/10.1101/gr.101337.109openalex-snapshot
Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells
inferredcites →https://doi.org/10.1101/gr.139618.112openalex-snapshot
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
inferredcites →https://doi.org/10.1101/gr.1933104openalex-snapshot
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
inferredcites →https://doi.org/10.1146/annurev.bi.56.070187.002343openalex-snapshot
ALTERNATIVE SPLICING: A UBIQUITOUS MECHANISM FOR THE GENERATION OF MULTIPLE PROTEIN ISOFORMS FROM SINGLE GENES
inferredcites →https://doi.org/10.1172/jci200215593openalex-snapshot
SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver
inferredcites →https://doi.org/10.1186/s12864-016-2539-zopenalex-snapshot
A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome
inferredcites →https://doi.org/10.1261/rna.065136.117openalex-snapshot
The life of U6 small nuclear RNA, from cradle to grave
inferredcites →https://doi.org/10.1371/journal.pone.0102895openalex-snapshot
Multiplicity of 5′ Cap Structures Present on Short RNAs
inferredcites →https://doi.org/10.2144/000112900openalex-snapshot
Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing
inferredcites →https://doi.org/10.7554/elife.42179openalex-snapshot
Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1261/rna.078703.121openalex-snapshot
Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing
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