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The Genome of the Zebra Mussel, Dreissena polymorpha : A Resource for Invasive Species Research

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/lno.10380openalex-snapshot

Mussels blow rings: Jet behavior affects local mixing

inferredcites →https://doi.org/10.1007/bf00325258openalex-snapshot

The annual reproductive cycle of the freshwater mussel Dreissena polymorpha Pallas in lakes

inferredcites →https://doi.org/10.1007/pl00000786openalex-snapshot

Glycine-rich proteins as structural components of plant cell walls

inferredcites →https://doi.org/10.1007/s00027-011-0237-0openalex-snapshot

Biological and ecological mechanisms for overcoming sperm limitation in invasive dreissenid mussels

inferredcites →https://doi.org/10.1007/s00438-010-0517-8openalex-snapshot

Gene expression profiling during the byssogenesis of zebra mussel (Dreissena polymorpha)

inferredcites →https://doi.org/10.1007/s10126-013-9537-9openalex-snapshot

Novel Proteins Identified in the Insoluble Byssal Matrix of the Freshwater Zebra Mussel

inferredcites →https://doi.org/10.1007/s10530-006-9013-9openalex-snapshot

Changes in Global Economies and Trade: the Potential Spread of Exotic Freshwater Bivalves

inferredcites →https://doi.org/10.1007/s10530-009-9422-7openalex-snapshot

Non-indigenous invasive bivalves as ecosystem engineers

inferredcites →https://doi.org/10.1007/s10530-010-9763-2openalex-snapshot

Population genetic history of the dreissenid mussel invasions: expansion patterns across North America

inferredcites →https://doi.org/10.1007/s10530-011-0146-0openalex-snapshot

Low dissolved ions may limit secondary invasion of inland waters by exotic round gobies and dreissenid mussels in North America

inferredcites →https://doi.org/10.1007/s10530-013-0498-8openalex-snapshot

Rapid range expansion of the invasive quagga mussel in relation to zebra mussel presence in The Netherlands and Western Europe

inferredcites →https://doi.org/10.1007/s10530-016-1094-5openalex-snapshot

Overland transport of recreational boats as a spreading vector of zebra mussel Dreissena polymorpha

inferredcites →https://doi.org/10.1007/s10530-018-1714-3openalex-snapshot

Dispersal mechanisms for zebra mussels: population genetics supports clustered invasions over spread from hub lakes in Minnesota

inferredcites →https://doi.org/10.1007/s10750-010-0533-zopenalex-snapshot

Differences in growth and survivorship of zebra and quagga mussels: size matters

inferredcites →https://doi.org/10.1007/s10750-016-3072-4openalex-snapshot

Detachment rates of dreissenid mussels after boat hull-mediated overland dispersal

inferredcites →https://doi.org/10.1007/s10750-017-3088-4openalex-snapshot

Next-generation sequencing of Dreissena polymorpha transcriptome sheds light on its mitochondrial DNA

inferredcites →https://doi.org/10.1016/j.cbpb.2006.03.004openalex-snapshot

Shematrin: A family of glycine-rich structural proteins in the shell of the pearl oyster Pinctada fucata

inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

inferredcites →https://doi.org/10.1016/j.cell.2015.02.042openalex-snapshot

Horizontal Transmission of Clonal Cancer Cells Causes Leukemia in Soft-Shell Clams

inferredcites →https://doi.org/10.1016/j.cels.2015.07.012openalex-snapshot

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

inferredcites →https://doi.org/10.1016/j.cub.2012.09.036openalex-snapshot

The Magnitude of Global Marine Species Diversity

inferredcites →https://doi.org/10.1016/j.jbiotec.2017.06.1198openalex-snapshot

25 years of serving the community with ribosomal RNA gene reference databases and tools

inferredcites →https://doi.org/10.1016/j.jglr.2009.11.007openalex-snapshot

The good, the bad, and the algae: Perceiving ecosystem services and disservices generated by zebra and quagga mussels

inferredcites →https://doi.org/10.1016/j.jglr.2014.04.010openalex-snapshot

Twenty five years of changes in Dreissena spp. populations in Lake Erie

inferredcites →https://doi.org/10.1016/j.jglr.2014.11.004openalex-snapshot

The future of species invasions in the Great Lakes-St. Lawrence River basin

inferredcites →https://doi.org/10.1016/j.margen.2010.01.001openalex-snapshot

Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): Identification of the “missing” ATPase 8 gene

inferredcites →https://doi.org/10.1016/j.tig.2007.05.011openalex-snapshot

The unusual system of doubly uniparental inheritance of mtDNA: isn’t one enough?

inferredcites →https://doi.org/10.1017/s0080456800014502openalex-snapshot

II.—On the Heteromyarian Condition in the Bivalvia with Special Reference toDreissena polymorphaand Certain Mytilacea

inferredcites →https://doi.org/10.1023/a:1026112915163openalex-snapshot

Patterns of Spread of the Zebra Mussel (Dreissena polymorpha (Pallas)): the Continuing Invasion of Belarussian Lakes

inferredcites →https://doi.org/10.1038/nature11413openalex-snapshot

The oyster genome reveals stress adaptation and complexity of shell formation

inferredcites →https://doi.org/10.1038/nature18599openalex-snapshot

Widespread transmission of independent cancer lineages within multiple bivalve species

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/nbt.2727openalex-snapshot

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

inferredcites →https://doi.org/10.1038/ng.3802openalex-snapshot

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot

HISAT: a fast spliced aligner with low memory requirements

inferredcites →https://doi.org/10.1038/s41467-017-01927-0openalex-snapshot

Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins

inferredcites →https://doi.org/10.1038/s41559-017-0120openalex-snapshot

Scallop genome provides insights into evolution of bilaterian karyotype and development

inferredcites →https://doi.org/10.1038/s41559-017-0121openalex-snapshot

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

inferredcites →https://doi.org/10.1073/pnas.1409945111openalex-snapshot

Activation of transcription and retrotransposition of a novel retroelement, Steamer , in neoplastic hemocytes of the mollusk Mya arenaria

inferredcites →https://doi.org/10.1073/pnas.1717227115openalex-snapshot

Horizontal transfer of retrotransposons between bivalves and other aquatic species of multiple phyla

inferredcites →https://doi.org/10.1074/jbc.m313585200openalex-snapshot

Characterization of Aplysia Enticin and Temptin, Two Novel Water-borne Protein Pheromones That Act in Concert with Attractin to Stimulate Mate Attraction

inferredcites →https://doi.org/10.1080/00087114.2003.10589354openalex-snapshot

Banding chromosome patterns of zebra musselDreissena polymorpha(Pallas) from the heated Konin lakes system (Poland)

inferredcites →https://doi.org/10.1080/08927010801975345openalex-snapshot

Putative identification of expressed genes associated with attachment of the zebra mussel (Dreissena polymorpha)

inferredcites →https://doi.org/10.1080/08927014.2012.746672openalex-snapshot

Byssal proteins of the freshwater zebra mussel,Dreissena polymorpha

inferredcites →https://doi.org/10.1080/10635150390235520openalex-snapshot

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

inferredcites →https://doi.org/10.1093/abbs/gmu054openalex-snapshot

Cloning and characterization of the shell matrix protein Shematrin in scallop Chlamys farreri

inferredcites →https://doi.org/10.1093/bib/bbx108openalex-snapshot

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

inferredcites →https://doi.org/10.1093/bioinformatics/bti042openalex-snapshot

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

inferredcites →https://doi.org/10.1093/bioinformatics/bti310openalex-snapshot

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot

InterProScan 5: genome-scale protein function classification

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu314openalex-snapshot

SAMBLASTER : fast duplicate marking and structural variant read extraction

inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

inferredcites →https://doi.org/10.1093/bioinformatics/btv661openalex-snapshot

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS

inferredcites →https://doi.org/10.1093/bioinformatics/btx153openalex-snapshot

GenomeScope: fast reference-free genome profiling from short reads

inferredcites →https://doi.org/10.1093/gigascience/gix128openalex-snapshot

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, Limnoperna fortunei

inferredcites →https://doi.org/10.1093/icb/36.3.311openalex-snapshot

Variations in the Reproductive Cycle ofDreissena Polymorphain Europe, Russia, and North America

inferredcites →https://doi.org/10.1093/icb/36.3.339openalex-snapshot

The Physiological Ecology of the Zebra Mussel, Dreissena polymorpha , in North America and Europe

inferredcites →https://doi.org/10.1093/molbev/msn067openalex-snapshot

An Improved General Amino Acid Replacement Matrix

inferredcites →https://doi.org/10.1093/molbev/msp278openalex-snapshot

Parallel Evolution of Nacre Building Gene Sets in Molluscs

inferredcites →https://doi.org/10.1093/molbev/msx116openalex-snapshot

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

inferredcites →https://doi.org/10.1093/molbev/msx149openalex-snapshot

SMS: Smart Model Selection in PhyML

inferredcites →https://doi.org/10.1093/mollus/eyv033openalex-snapshot

Impact of abiotic factors on aggregation behaviour of the zebra musselDreissena polymorpha

inferredcites →https://doi.org/10.1093/nar/27.8.1767openalex-snapshot

Animal mitochondrial genomes

inferredcites →https://doi.org/10.1093/nar/gkh131openalex-snapshot

UniProt: the Universal Protein knowledgebase

inferredcites →https://doi.org/10.1093/nar/gki458openalex-snapshot

AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

inferredcites →https://doi.org/10.1093/nar/gki487openalex-snapshot

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

inferredcites →https://doi.org/10.1093/nar/gkq1061openalex-snapshot

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1093/nar/gkt1178openalex-snapshot

The carbohydrate-active enzymes database (CAZy) in 2013

inferredcites →https://doi.org/10.1093/nar/gkt1209openalex-snapshot

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

inferredcites →https://doi.org/10.1093/nar/gkt1223openalex-snapshot

Pfam: the protein families database

inferredcites →https://doi.org/10.1093/nar/gkt214openalex-snapshot

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

inferredcites →https://doi.org/10.1093/nar/gkv1118openalex-snapshot

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

inferredcites →https://doi.org/10.1093/nar/gkw413openalex-snapshot

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

inferredcites →https://doi.org/10.1093/sysbio/syr041openalex-snapshot

Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes

inferredcites →https://doi.org/10.1098/rsif.2013.0041openalex-snapshot

Rapid evolution of pearl oyster shell matrix proteins with repetitive, low-complexity domains

inferredcites →https://doi.org/10.1098/rstb.1984.0036openalex-snapshot

Macromolecules in mollusc shells and their functions in biomineralization

inferredcites →https://doi.org/10.1101/505305openalex-snapshot

The quagga mussel genome and the evolution of freshwater tolerance: Supplementary Material

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

inferredcites →https://doi.org/10.1111/j.1365-294x.2006.02814.xopenalex-snapshot

Molecular ecology of zebra mussel invasions

inferredcites →https://doi.org/10.1111/j.1365-294x.2006.02816.xopenalex-snapshot

Phylogeography and systematics of zebra mussels and related species

inferredcites →https://doi.org/10.1126/science.1090506openalex-snapshot

Hemocyte-Mediated Shell Mineralization in the Eastern Oyster

inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

inferredcites →https://doi.org/10.1139/cjfas-53-1-134openalex-snapshot

Biofilm and substrate preference in the dreissenid larvae of Lake Erie

inferredcites →https://doi.org/10.1139/cjfas-56-9-1687openalex-snapshot

Intraspecific gastropod shell strength variation among north temperate lakes

inferredcites →https://doi.org/10.1139/cjz-76-11-2010openalex-snapshot

Seasonal and depth variations in gametogenesis and spawning of Dreissena polymorpha and Dreissena bugensis in eastern Lake Erie

inferredcites →https://doi.org/10.1139/f03-171openalex-snapshot

Food web interactions between larval bluegill (Lepomis macrochirus) and exotic zebra mussels (Dreissena polymorpha)

inferredcites →https://doi.org/10.1139/f04-043openalex-snapshot

Effects of an invasive bivalve (Dreissena polymorpha) on fish in the Hudson River estuary

inferredcites →https://doi.org/10.1139/f98-212openalex-snapshot

Growth and mortality rates of the zebra mussel,Dreissena polymorpha, in the Lower Mississippi River

inferredcites →https://doi.org/10.1139/g03-069openalex-snapshot

Genome size estimates for two important freshwater molluscs, the zebra mussel (Dreissena polymorpha) and the schistosomiasis vector snail (Biomphalaria glabrata)

inferredcites →https://doi.org/10.1146/annurev.biochem.77.032207.120833openalex-snapshot

Collagen Structure and Stability

inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot

Automated generation of heuristics for biological sequence comparison

inferredcites →https://doi.org/10.1186/1471-2148-10-50openalex-snapshot

Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA

inferredcites →https://doi.org/10.1186/1471-2148-8-276openalex-snapshot

Relationships of Gag-pol Diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis

inferredcites →https://doi.org/10.1186/gb-2008-9-1-r7openalex-snapshot

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

inferredcites →https://doi.org/10.1186/s12859-018-2485-7openalex-snapshot

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

inferredcites →https://doi.org/10.1186/s13059-019-1715-2openalex-snapshot

Next-generation genome annotation: we still struggle to get it right

inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot

OrthoFinder: phylogenetic orthology inference for comparative genomics

inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot

Repbase Update, a database of repetitive elements in eukaryotic genomes

inferredcites →https://doi.org/10.1186/s40851-016-0039-2openalex-snapshot

Bivalve-specific gene expansion in the pearl oyster genome: implications of adaptation to a sessile lifestyle

inferredcites →https://doi.org/10.1201/b15437-43openalex-snapshot

Nutrient Cycling by Dreissenid Mussels: Controlling Factors and Ecosystem Response

inferredcites →https://doi.org/10.1201/b15437-46openalex-snapshot

Impacts of Dreissena on Benthic Macroinvertebrate Communities: Predictable Patterns Revealed by Invasion History

inferredcites →https://doi.org/10.1201/b15437-48openalex-snapshot

Zebra Mussel Impacts on Unionids: A Synthesis of Trends in North America and Europe

inferredcites →https://doi.org/10.1201/b15437-6openalex-snapshot

Chronological History of Zebra and Quagga Mussels (Dreissenidae) in North America, 1988–2010

inferredcites →https://doi.org/10.1215/21573698-1504517openalex-snapshot

The effect of near‐bed turbulence on sperm dilution and fertilization success of broadcast‐spawning bivalves

inferredcites →https://doi.org/10.1242/jeb.203.20.3065openalex-snapshot

Immunolocalization of Dpfp1, a Byssal Protein of the Zebra Mussel Dreissena Polymorpha

inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

inferredcites →https://doi.org/10.1515/1544-6115.1826openalex-snapshot

Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates

inferredcites →https://doi.org/10.1525/9780520948433-159openalex-snapshot

100 of the World’s Worst Invasive Alien Species: A Selection From The Global Invasive Species Database

inferredcites →https://doi.org/10.1534/g3.118.200948openalex-snapshot

Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution

inferredcites →https://doi.org/10.1890/09-1249.1openalex-snapshot

What a difference a species makes: a meta–analysis of dreissenid mussel impacts on freshwater ecosystems

inferredcites →https://doi.org/10.1890/1051-0761(2001)011[1789:odoais]2.0.co;2openalex-snapshot

OVERLAND DISPERSAL OF AQUATIC INVASIVE SPECIES: A RISK ASSESSMENT OF TRANSIENT RECREATIONAL BOATING

inferredcites →https://doi.org/10.2307/1543045openalex-snapshot

A Major Protein Precursor of Zebra Mussel (Dreissena polymorpha) Byssus: Deduced Sequence and Significance

inferredcites →https://doi.org/10.2983/035.031.0432openalex-snapshot

Bibliography ofDreissena polymorpha(Zebra Mussels) andDreissena rostriformis Bugensis(QUAGGA Mussels): 1989 to 2011

inferredcites →https://doi.org/10.3389/fgene.2017.00053openalex-snapshot

Transcription Factors in Fungi: TFome Dynamics, Three Major Families, and Dual-Specificity TFs

inferredcites →https://doi.org/10.3394/0380-1330(2006)32[180:cibico]2.0.co;2openalex-snapshot

Changes in Benthic Invertebrate Communities of South Bay, Lake Huron Following Invasion by Zebra Mussels (Dreissena polymorpha), and Potential Effects on Lake Whitefish (Coregonus clupeaformis) Diet and Growth

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1007/s10592-019-01224-xopenalex-snapshot

Genome projects in invasion biology

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False mussels (Mytilopsis leucophaeata) can be mechanical carriers of the shrimp microsporidian Enterocytozoon hepatopenaei (EHP)

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Unorthodox features in two venerid bivalves with doubly uniparental inheritance of mitochondria

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Single-Cell RNA Sequencing Atlas From a Bivalve Larva Enhances Classical Cell Lineage Studies

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