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Sequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acuta
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Temperature-Regulated Bleaching and Tissue Lysis of Pocillopora damicornis by the Novel Pathogen Vibrio coralliilyticus
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Energetics, competency, and long-distance dispersal of planula larvae of the coral Pocillopora damicornis
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A novel Vibrio sp. pathogen of the coral Pocillopora damicornis
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Genetic diversity, clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular, fragmented reef system
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Transfer of intracolonial genetic variability through gametes in Acropora hyacinthus corals
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The Next-Generation Sequencing Revolution and Its Impact on Genomics
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Empty Niches after Extinctions Increase Population Sizes of Modern Corals
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The zebrafish reference genome sequence and its relationship to the human genome
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Innate Immune Responses of a Scleractinian Coral to Vibriosis
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Gene prediction with a hidden Markov model and a new intron submodel
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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
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TopHat: discovering splice junctions with RNA-Seq
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The Sequence Alignment/Map format and SAMtools
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QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
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KEGG: Kyoto Encyclopedia of Genes and Genomes
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WEGO: a web tool for plotting GO annotations
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RepARK—de novo creation of repeat libraries from whole-genome NGS reads
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Local adaptation in transgenerational responses to predators
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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
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Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
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Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies
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Whole Transcriptome Analysis of the Coral Acropora millepora Reveals Complex Responses to CO2‐driven Acidification during the Initiation of Calcification
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Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01287.xopenalex-snapshot
Bacteria associated with the rapid tissue necrosis of stony corals
inferredcites →https://doi.org/10.1111/mec.13200openalex-snapshot
More than one genotype: how common is intracolonial genetic variability in scleractinian corals?
inferredcites →https://doi.org/10.1111/zoj.12092openalex-snapshot
With eyes wide open: a revision of species within and closely related to the Pocillopora damicornis species complex (Scleractinia; Pocilloporidae) using morphology and genetics
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The Sequence of the Human Genome
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Climate Change, Human Impacts, and the Resilience of Coral Reefs
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The Genome of the Sea Urchin Strongylocentrotus purpuratus
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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
inferredcites →https://doi.org/10.1126/science.282.5396.2012openalex-snapshot
Genome Sequence of the Nematode C. elegans : A Platform for Investigating Biology
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The Genome Sequence of Drosophila melanogaster
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The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis
inferredcites →https://doi.org/10.1159/000084979openalex-snapshot
Repbase Update, a database of eukaryotic repetitive elements
inferredcites →https://doi.org/10.1186/1471-2164-10-219openalex-snapshot
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
inferredcites →https://doi.org/10.1186/1471-2164-10-333openalex-snapshot
Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis
inferredcites →https://doi.org/10.1186/1471-2164-11-1openalex-snapshot
Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis
inferredcites →https://doi.org/10.1186/1471-2164-12-585openalex-snapshot
Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis
inferredcites →https://doi.org/10.1186/1471-2164-13-271openalex-snapshot
Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida
inferredcites →https://doi.org/10.1186/1472-6793-9-14openalex-snapshot
Coral bleaching under thermal stress: putative involvement of host/symbiont recognition mechanisms
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/s12864-015-2294-6openalex-snapshot
Locating rearrangement events in a phylogeny based on highly fragmented assemblies
inferredcites →https://doi.org/10.1186/s13742-016-0128-3openalex-snapshot
Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus , a threespine stickleback parasite
inferredcites →https://doi.org/10.1242/jeb.053165openalex-snapshot
Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus
inferredcites →https://doi.org/10.1242/jeb.123018openalex-snapshot
Preconditioning in the reef-building coralPocillopora damicornisand the potential for trans-generational acclimatization in coral larvae under future climate change conditions
inferredcites →https://doi.org/10.1371/journal.pgen.1000732openalex-snapshot
Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
inferredcites →https://doi.org/10.1371/journal.pone.0058652openalex-snapshot
Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0085182openalex-snapshot
A Snapshot of a Coral “Holobiont”: A Transcriptome Assembly of the Scleractinian Coral, Porites, Captures a Wide Variety of Genes from Both the Host and Symbiotic Zooxanthellae
inferredcites →https://doi.org/10.1371/journal.pone.0107672openalex-snapshot
Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response
inferredcites →https://doi.org/10.1534/g3.115.020164openalex-snapshot
De Novo Assembly and Characterization of Four Anthozoan (Phylum Cnidaria) Transcriptomes
inferredcites →https://doi.org/10.3390/d3030405openalex-snapshot
Novel Genetic Diversity Through Somatic Mutations: Fuel for Adaptation of Reef Corals?
inferredcites →https://doi.org/10.5860/choice.35-2087openalex-snapshot
Functional roles of biodiversity: a global perspective
inferredcites →https://doi.org/10.5962/bhl.title.60617openalex-snapshot
Scleractinia of Eastern Australia /
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-3-031-98584-3_5openalex-snapshot
Evaluating the Role of Natural and Human-Assisted Coral Reproduction to Maintain and Recover Disturbed Reefs
inferred← citeshttps://doi.org/10.1007/s00338-021-02074-1openalex-snapshot
Tissue fusion and enhanced genotypic diversity support the survival of Pocillopora acuta coral recruits under thermal stress
inferred← citeshttps://doi.org/10.1007/s00338-025-02659-0openalex-snapshot
One species to rule them all: genomics sheds light on the Pocillopora species diversity and distinctiveness around the Arabian Peninsula
inferred← citeshttps://doi.org/10.1007/s10709-022-00165-7openalex-snapshot
Species and population genomic differentiation in Pocillopora corals (Cnidaria, Hexacorallia)
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107803openalex-snapshot
From genomics to integrative species delimitation? The case study of the Indo-Pacific Pocillopora corals
inferred← citeshttps://doi.org/10.1038/s41598-024-57136-5openalex-snapshot
Investigating the potential roles of intra-colonial genetic variability in Pocillopora corals using genomics
inferred← citeshttps://doi.org/10.1038/s41598-024-59268-0openalex-snapshot
Genome-wide analysis to uncover how Pocillopora acuta survives the challenging intertidal environment
inferred← citeshttps://doi.org/10.1093/gbe/evag072openalex-snapshot
Cosmopolitan Gene Families With Known Functions Are Hotspots for the Evolution of Novel Genes in Stony Corals
inferred← citeshttps://doi.org/10.1101/2021.05.04.442552openalex-snapshot
Population genomics of Pocillopora corals: insights from RAD-sequencing
inferred← citeshttps://doi.org/10.1101/2022.10.04.510617openalex-snapshot
From Genomics to Integrative Taxonomy? The Case Study of Pocillopora Corals
inferred← citeshttps://doi.org/10.1101/2022.11.28.517745openalex-snapshot
Endozoicomonas -chlamydiae interactions in cell-associated microbial aggregates of the coral Pocillopora acuta
inferred← citeshttps://doi.org/10.1101/2023.09.14.557667openalex-snapshot
A novel, tissue-associated and vertically transmitted bacterial symbiont in the coral Pocillopora acuta
inferred← citeshttps://doi.org/10.1101/398602openalex-snapshot
Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals
inferred← citeshttps://doi.org/10.1111/1755-0998.13542openalex-snapshot
Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases
inferred← citeshttps://doi.org/10.1111/ddi.13940openalex-snapshot
Contrasting Patterns of Population Genomic Structure Between Broadcast‐Spawning and Brooding Corals in Southeast Asia
inferred← citeshttps://doi.org/10.1111/jbi.14560openalex-snapshot
Environmental and geographical factors structure cauliflower coral's algal symbioses across the Indo‐Pacific
inferred← citeshttps://doi.org/10.1126/sciadv.adg0773openalex-snapshot
Colocalization and potential interactions of Endozoicomonas and chlamydiae in microbial aggregates of the coral Pocillopora acuta
inferred← citeshttps://doi.org/10.12688/wellcomeopenres.17058.1openalex-snapshot
The tropical coral Pocillopora acuta displays an unusual chromatin structure and shows histone H3 clipping plasticity upon bleaching
inferred← citeshttps://doi.org/10.2174/0118743315298974240313043427openalex-snapshot
Isolation, Selection, and Biological Evaluation for Bacteria that Fix Nitrogen and Produce Indole-3-Acetic Acid from Paddy Soils in Vietnam
inferred← citeshttps://doi.org/10.22541/au.167637253.37870382/v1openalex-snapshot
How does the coral, Pocillopora acuta, survive the challenging intertidal environment? A genome-wide analysis
inferred← citeshttps://doi.org/10.24072/pcjournal.79openalex-snapshot
Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals
inferred← citeshttps://doi.org/10.26508/lsa.202503592openalex-snapshot
Conserved HSP60 structure with lineage- and context-specific regulation in cnidarians
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