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Convergent changes in gene expression associated with repeated transitions between hummingbird and bee pollinated flowers

https://doi.org/10.1101/706127
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Outgoing claims: the papers this work cites, builds on, or argues with.

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ORNITHOPHILY AMONG THE HAWAIIAN LOBELIOIDEAE (CAMPANULACEAE): EVIDENCE FROM FLORAL NECTAR SUGAR COMPOSITIONS
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FLORAL NECTAR SUGAR COMPOSITION AND POLLINATOR TYPE AMONG NEW WORLD GENERA IN TRIBE ANTIRRHINEAE (SCROPHULARIACEAE)
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Nectar Sugar Composition in Relation to Pollination Syndromes in Sinningieae (Gesneriaceae)
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Flavonoid components and flower color change in transgenic tobacco plants by suppression of chalcone isomerase gene
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The genetic dissection of floral pollination syndromes
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The genetic control of flower–pollinator specificity
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Review: Nectar biology: From molecules to ecosystems
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Evolvability of flower geometry: Convergence in pollinator-driven morphological evolution of flowers
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Non‐Euglossine Bees also Function as Pollinators of Sinningia Species (Gesneriaceae) in Southeastern Brazil
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Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum
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Cytochrome P450 CYP79A2 from Arabidopsis thaliana L. Catalyzes the Conversion of l-Phenylalanine to Phenylacetaldoxime in the Biosynthesis of Benzylglucosinolate
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THE PREDICTIVE VALUE OF NECTAR CHEMISTRY TO THE RECOGNITION OF POLLINATOR TYPES
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Similarity and Apparent Convergence in the Nectar-Sugar Composition of Some Hummingbird-Pollinated Flowers
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Evolutionary Transitions in Floral Color
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Explaining Evolutionary Shifts between Bee and Hummingbird Pollination: Convergence, Divergence, and Directionality
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edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
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Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development
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Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation
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The Genetic Basis of Phenotypic Convergence in Beach Mice: Similar Pigment Patterns but Different Genes
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Gene Loss and Parallel Evolution Contribute to Species Difference in Flower Color
inferredcites →https://doi.org/10.1093/molbev/mss255openalex-snapshot
Functional Evolution of an Anthocyanin Pathway Enzyme during a Flower Color Transition
inferredcites →https://doi.org/10.1093/molbev/msu298openalex-snapshot
Ecological Transition Predictably Associated with Gene Degeneration
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Comparative Transcriptomics of Convergent Evolution: Different Genes but Conserved Pathways Underlie Caste Phenotypes across Lineages of Eusocial Insects
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STRING v10: protein–protein interaction networks, integrated over the tree of life
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limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1098/rspb.2016.2816openalex-snapshot
Hummingbird pollination and the diversification of angiosperms: an old and successful association in Gesneriaceae
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inferredcites →https://doi.org/10.1104/pp.015966openalex-snapshot
WVD2 and WDL1 Modulate Helical Organ Growth and Anisotropic Cell Expansion in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.111.189258openalex-snapshot
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inferredcites →https://doi.org/10.1104/pp.126.2.485openalex-snapshot
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inferredcites →https://doi.org/10.1105/tpc.111.090894openalex-snapshot
JUNGBRUNNEN1 , a Reactive Oxygen Species–Responsive NAC Transcription Factor, Regulates Longevity in Arabidopsis
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The TRANSPARENT TESTA12 Gene of Arabidopsis Encodes a Multidrug Secondary Transporter-like Protein Required for Flavonoid Sequestration in Vacuoles of the Seed Coat Endothelium
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PREDICTABILITY AND IRREVERSIBILITY OF GENETIC CHANGES ASSOCIATED WITH FLOWER COLOR EVOLUTION INPENSTEMON BARBATUS
inferredcites →https://doi.org/10.1111/j.0269-8463.2004.00891.xopenalex-snapshot
Evolutionary changes in nectar sugar composition associated with switches between bird and insect pollination: the Canarian bird‐flower element revisited
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Trends in floral scent chemistry in pollination syndromes: floral scent composition in hummingbird-pollinated taxa
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A petunia chorismate mutase specialized for the production of floral volatiles
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inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03330.xopenalex-snapshot
Evolutionary breakdown of pollination specialization in a Caribbean plant radiation
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03726.xopenalex-snapshot
Overexpression of PhEXPA1 increases cell size, modifies cell wall polymer composition and affects the timing of axillary meristem development in Petunia hybrida
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THE GEOGRAPHICAL PATTERN OF SPECIATION AND FLORAL DIVERSIFICATION IN THE NEOTROPICS: THE TRIBE SINNINGIEAE (GESNERIACEAE) AS A CASE STUDY
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PARALLEL EVOLUTION AT MULTIPLE LEVELS IN THE ORIGIN OF HUMMINGBIRD POLLINATED FLOWERS INIPOMOEA
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/mec.12147openalex-snapshot
Similar traits, different genes? Examining convergent evolution in related weedy rice populations
inferredcites →https://doi.org/10.1111/nph.13576openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.1160072openalex-snapshot
Field Experiments with Transformed Plants Reveal the Sense of Floral Scents
inferredcites →https://doi.org/10.1146/annurev-ecolsys-120213-091851openalex-snapshot
The Molecular Basis of Phenotypic Convergence
inferredcites →https://doi.org/10.1146/annurev.ecolsys.34.011802.132347openalex-snapshot
Pollination Syndromes and Floral Specialization
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2164-8-96openalex-snapshot
Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays
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SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis
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Expression of flavonoid 3’-hydroxylase is controlled by P1, the regulator of 3-deoxyflavonoid biosynthesis in maize
inferredcites →https://doi.org/10.1186/gb-2009-10-1-r1openalex-snapshot
Analysis of the platypus genome suggests a transposon origin for mammalian imprinting
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2013-14-1-r1openalex-snapshot
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The promise of genomics in the study of plant-pollinator interactions
inferredcites →https://doi.org/10.1186/s12862-015-0424-zopenalex-snapshot
Repeated evolution and the impact of evolutionary history on adaptation
inferredcites →https://doi.org/10.1186/s12862-015-0527-6openalex-snapshot
Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae
inferredcites →https://doi.org/10.1186/s12864-017-3623-8openalex-snapshot
Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)
inferredcites →https://doi.org/10.1186/s13059-016-0902-7openalex-snapshot
Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants
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Rapid turnover of life-cycle-related genes in the brown algae
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CLASP localizes in two discrete patterns on cortical microtubules and is required for cell morphogenesis and cell division in Arabidopsis
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Genome-Wide Analysis of Gene Expression during Early Arabidopsis Flower Development
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Genome-Wide Analysis of Gene Expression during Early Arabidopsis Flower Development
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Dissection of Floral Pollination Syndromes in Petunia
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Espécies de Vanhouttea Lem. e Sinningia Nees (Gesneriaceae) polinizadas por beija-flores: interações relacionadas ao hábitat da planta e ao néctar
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Pollination biology of Paliavana tenuiflora (Gesneriaceae: Sinningeae) in Northeastern Brazil
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Patterns in Floral Nectar Characteristics of Some Bird-Visited Plant Species From Costa Rica
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Transcriptomic resources for an endemic Neotropical plant lineage (Gesneriaceae)
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The natural history of pollination
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Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis
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Genetic architecture of pollination syndrome transition between hummingbird-specialist and generalist species in the genus Rhytidophyllum (Gesneriaceae)

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inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107068openalex-snapshot
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
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