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An Out-of-Patagonia dispersal explains most of the worldwide genetic distribution in Saccharomyces eubayanus

https://doi.org/10.1101/709253
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1110s43openalex-snapshot
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
inferredcites →https://doi.org/10.1002/j.2050-0416.2011.tb00504.xopenalex-snapshot
Evaluation of ITS PCR and RFLP for Differentiation and Identification of Brewing Yeast and Brewery ‘Wild’ Yeast Contaminants
inferredcites →https://doi.org/10.1002/yea.3380openalex-snapshot
Bioprospecting for brewers: Exploiting natural diversity for naturally diverse beers
inferredcites →https://doi.org/10.1006/cres.2000.0221openalex-snapshot
Upper Cretaceous floras of King George Island, West Antarctica, and their palaeoenvironmental and phytogeographic implications
inferredcites →https://doi.org/10.1007/978-94-007-4363-2openalex-snapshot
Climatic and Environmental History of Isla de los Estados, Argentina
inferredcites →https://doi.org/10.1007/bf00134434openalex-snapshot
Subantarctic-Andean Nothofagus pumilio forests
inferredcites →https://doi.org/10.1007/s00253-016-8007-5openalex-snapshot
Novel brewing yeast hybrids: creation and application
inferredcites →https://doi.org/10.1007/s10295-015-1597-6openalex-snapshot
New lager yeast strains generated by interspecific hybridization
inferredcites →https://doi.org/10.1016/0040-5809(88)90004-4openalex-snapshot
Variances and covariances of squared linkage disequilibria in finite populations
inferredcites →https://doi.org/10.1016/0169-5347(92)90071-iopenalex-snapshot
Nothofagus: Evolution from a southern perspective
inferredcites →https://doi.org/10.1016/b978-0-12-372180-8.50042-1openalex-snapshot
AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
inferredcites →https://doi.org/10.1016/j.cell.2016.08.020openalex-snapshot
Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
inferredcites →https://doi.org/10.1016/j.cub.2014.04.031openalex-snapshot
Evidence for a Far East Asian origin of lager beer yeast
inferredcites →https://doi.org/10.1016/j.cub.2016.08.040openalex-snapshot
Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts
inferredcites →https://doi.org/10.1016/j.earscirev.2017.11.025openalex-snapshot
Sedimentary record of Andean mountain building
inferredcites →https://doi.org/10.1016/j.quascirev.2012.06.015openalex-snapshot
Postglacial vegetation, fire and climate dynamics at Central Chilean Patagonia (Lake Shaman, 44°S)
inferredcites →https://doi.org/10.1016/j.tig.2006.02.002openalex-snapshot
How did Saccharomyces evolve to become a good brewer?
inferredcites →https://doi.org/10.1038/416326aopenalex-snapshot
Dissecting the architecture of a quantitative trait locus in yeast
inferredcites →https://doi.org/10.1038/nature07670openalex-snapshot
Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1038/nature07743openalex-snapshot
Population genomics of domestic and wild yeasts
inferredcites →https://doi.org/10.1038/ncomms5044openalex-snapshot
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum
inferredcites →https://doi.org/10.1038/ng.3847openalex-snapshot
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nprot.2018.025openalex-snapshot
Long-read sequencing data analysis for yeasts
inferredcites →https://doi.org/10.1038/s41586-018-0030-5openalex-snapshot
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
inferredcites →https://doi.org/10.1073/pnas.1105430108openalex-snapshot
Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
inferredcites →https://doi.org/10.1086/688018openalex-snapshot
Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions
inferredcites →https://doi.org/10.1093/bioinformatics/btn021openalex-snapshot
Using flowViz to visualize flow cytometry data
inferredcites →https://doi.org/10.1093/bioinformatics/btn129openalex-snapshot
adegenet : a R package for the multivariate analysis of genetic markers
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts503openalex-snapshot
Qualimap: evaluating next-generation sequencing alignment data
inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot
fastp: an ultra-fast all-in-one FASTQ preprocessor
inferredcites →https://doi.org/10.1093/dnares/dsp003openalex-snapshot
Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid
inferredcites →https://doi.org/10.1093/femsyr/fov005openalex-snapshot
S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond
inferredcites →https://doi.org/10.1093/femsyr/fow021openalex-snapshot
RIM15 antagonistic pleiotropy is responsible for differences in fermentation and stress response kinetics in budding yeast
inferredcites →https://doi.org/10.1093/molbev/mss253openalex-snapshot
Yeast Adapts to a Changing Stressful Environment by Evolving Cross-Protection and Anticipatory Gene Regulation
inferredcites →https://doi.org/10.1093/molbev/mst187openalex-snapshot
Growth Rates Made Easy
inferredcites →https://doi.org/10.1093/molbev/msu136openalex-snapshot
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
inferredcites →https://doi.org/10.1093/molbev/msv168openalex-snapshot
The Genome Sequence ofSaccharomyces eubayanusand the Domestication of Lager-Brewing Yeasts
inferredcites →https://doi.org/10.1093/molbev/msy066openalex-snapshot
Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication
inferredcites →https://doi.org/10.1101/gr.116731.110openalex-snapshot
Revealing the genetic structure of a trait by sequencing a population under selection
inferredcites →https://doi.org/10.1111/1462-2920.13107openalex-snapshot
Saccharomyces eubayanus and Saccharomyces arboricola reside in North Island native New Zealand forests
inferredcites →https://doi.org/10.1111/1462-2920.14375openalex-snapshot
Phylogeography of the wild Lager‐brewing ancestor ( Saccharomyces eubayanus ) in Patagonia
inferredcites →https://doi.org/10.1111/1567-1364.12161openalex-snapshot
Why, when, and how did yeast evolve alcoholic fermentation?
inferredcites →https://doi.org/10.1111/1755-0998.12129openalex-snapshot
St AMPP : an R package for calculation of genetic differentiation and structure of mixed‐ploidy level populations
inferredcites →https://doi.org/10.1111/1755-0998.12387openalex-snapshot
Clumpak : a program for identifying clustering modes and packaging population structure inferences across K
inferredcites →https://doi.org/10.1111/1755-0998.12549openalex-snapshot
vcfr : a package to manipulate and visualize variant call format data in R
inferredcites →https://doi.org/10.1111/1755-0998.12719openalex-snapshot
StructureSelector : A web‐based software to select and visualize the optimal number of clusters using multiple methods
inferredcites →https://doi.org/10.1111/j.1095-8312.2011.01656.xopenalex-snapshot
Emerging phylogeographical patterns of plants and terrestrial vertebrates from Patagonia
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00828.xopenalex-snapshot
hierfstat , a package for r to compute and test hierarchical F ‐statistics
inferredcites →https://doi.org/10.1111/jbi.12650openalex-snapshot
Non‐congruent fossil and phylogenetic evidence on the evolution of climatic niche in the Gondwana genus Nothofagus
inferredcites →https://doi.org/10.1111/mec.12702openalex-snapshot
Population structure and reticulate evolution of S accharomyces eubayanus and its lager‐brewing hybrids
inferredcites →https://doi.org/10.1126/sciadv.aav1869openalex-snapshot
Mitochondrial DNA and temperature tolerance in lager yeasts
inferredcites →https://doi.org/10.1128/aem.02396-07openalex-snapshot
Natural Populations of Saccharomyces kudriavzevii in Portugal Are Associated with Oak Bark and Are Sympatric with S. cerevisiae and S. paradoxus
inferredcites →https://doi.org/10.1128/aem.02570-07openalex-snapshot
Molecular Analysis of Maltotriose Active Transport and Fermentation by Saccharomyces cerevisiae Reveals a Determinant Role for the AGT1 Permease
inferredcites →https://doi.org/10.1186/1471-2105-10-106openalex-snapshot
flowCore: a Bioconductor package for high throughput flow cytometry
inferredcites →https://doi.org/10.1186/2193-1801-3-431openalex-snapshot
STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface
inferredcites →https://doi.org/10.1371/journal.pgen.1003693openalex-snapshot
QTL Analysis of High Thermotolerance with Superior and Downgraded Parental Yeast Strains Reveals New Minor QTLs and Converges on Novel Causative Alleles Involved in RNA Processing
inferredcites →https://doi.org/10.1371/journal.pgen.1006155openalex-snapshot
Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus
inferredcites →https://doi.org/10.1371/journal.pgen.1007786openalex-snapshot
Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function
inferredcites →https://doi.org/10.1371/journal.pgen.1008680openalex-snapshot
Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids
inferredcites →https://doi.org/10.1371/journal.pone.0068734openalex-snapshot
Yeast “Make-Accumulate-Consume” Life Strategy Evolved as a Multi-Step Process That Predates the Whole Genome Duplication
inferredcites →https://doi.org/10.1534/g3.111.000273openalex-snapshot
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for theSaccharomyces sensu strictoGenus
inferredcites →https://doi.org/10.1534/genetics.113.160291openalex-snapshot
An Evaluation of High-Throughput Approaches to QTL Mapping in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1534/genetics.114.173633openalex-snapshot
Genomic Insights into the Saccharomyces sensu stricto Complex
inferredcites →https://doi.org/10.1534/genetics.116.199216openalex-snapshot
Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)
inferredcites →https://doi.org/10.18637/jss.v022.i04openalex-snapshot
The ade4 Package: Implementing the Duality Diagram for Ecologists
inferredcites →https://doi.org/10.3389/fmicb.2018.01786openalex-snapshot
Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357T
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.5962/bhl.title.3259openalex-snapshot
Dromiciops gliroides Thomas, 1894, last of the Microbiotheria (Marsupialia), with a review of the family Microbiotheriidae / Philip Hershkovitz.
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
inferredcites →https://doi.org/10.7717/peerj.281openalex-snapshot
Poppr : an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/femsyr/foaa008openalex-snapshot
Into the wild: new yeast genomes from natural environments and new tools for their analysis
inferred← citeshttps://doi.org/10.1111/1751-7915.13545openalex-snapshot
Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008680openalex-snapshot
Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids
inferred← citeshttps://doi.org/10.3390/fermentation6010014openalex-snapshot
Saccharomyces arboricola and Its Hybrids’ Propensity for Sake Production: Interspecific Hybrids Reveal Increased Fermentation Abilities and a Mosaic Metabolic Profile
inferred← citeshttps://doi.org/10.3390/microorganisms8050755openalex-snapshot
Volatile Compound Screening Using HS-SPME-GC/MS on Saccharomyces eubayanus Strains under Low-Temperature Pilsner Wort Fermentation
inferred← citeshttps://doi.org/10.33915/etd.7648openalex-snapshot
The Exploration of Nanotoxicological Copper and Interspecific Saccharomyces Hybrids
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