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Regional oceanographic features and hydrothermal activity influence protist diversity and biogeography in the Okinawa Trough

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/2013jc008899openalex-snapshot

Observations of flow variability through the Kerama Gap between the East China Sea and the Northwestern Pacific

inferredcites →https://doi.org/10.1002/2013jc009326openalex-snapshot

Intermediate and deep water formation in the Okinawa Trough

inferredcites →https://doi.org/10.1002/bies.201300176openalex-snapshot

The rise and fall of Picobiliphytes: How assumed autotrophs turned out to be heterotrophs

inferredcites →https://doi.org/10.1007/s00300-011-1039-5openalex-snapshot

Protist community composition during spring in an Arctic flaw lead polynya

inferredcites →https://doi.org/10.1016/j.csr.2018.12.014openalex-snapshot

Compositional characteristics and sources of DIC and DOC in seawater of the Okinawa Trough, East China Sea

inferredcites →https://doi.org/10.1016/j.dsr.2016.07.007openalex-snapshot

Molecular diversity and distribution pattern of ciliates in sediments from deep-sea hydrothermal vents in the Okinawa Trough and adjacent sea areas

inferredcites →https://doi.org/10.1016/j.dsr2.2010.02.019openalex-snapshot

Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry, and genomics

inferredcites →https://doi.org/10.1016/j.ejop.2011.04.001openalex-snapshot

Morphological description of three marine ciliates (Ciliophora, Scuticociliatia), with establishment of a new genus and two new species

inferredcites →https://doi.org/10.1016/j.ejop.2014.08.001openalex-snapshot

Scale evolution in Paraphysomonadida (Chrysophyceae): Sequence phylogeny and revised taxonomy of Paraphysomonas, new genus Clathromonas, and 25 new species

inferredcites →https://doi.org/10.1016/j.mib.2016.04.001openalex-snapshot

Marine protist associations and environmental impacts across trophic levels in the twilight zone and below

inferredcites →https://doi.org/10.1016/j.pt.2003.09.013openalex-snapshot

Are hydrothermal vents oases for parasitic protists?

inferredcites →https://doi.org/10.1016/j.ympev.2017.03.010openalex-snapshot

Phylogeny, classification and diversity of Choreotrichia and Oligotrichia (Ciliophora, Spirotrichea)

inferredcites →https://doi.org/10.1029/2006gl026115openalex-snapshot

Liquid CO2 venting on the seafloor: Yonaguni Knoll IV hydrothermal system, Okinawa Trough

inferredcites →https://doi.org/10.1029/2010jc006437openalex-snapshot

Interaction between the East China Sea Kuroshio and the Ryukyu Current as revealed by the self‐organizing map

inferredcites →https://doi.org/10.1038/ismej.2011.6openalex-snapshot

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

inferredcites →https://doi.org/10.1038/ismej.2012.7openalex-snapshot

Effect of oxygen minimum zone formation on communities of marine protists

inferredcites →https://doi.org/10.1038/ismej.2012.73openalex-snapshot

Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank

inferredcites →https://doi.org/10.1038/ismej.2013.204openalex-snapshot

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

inferredcites →https://doi.org/10.1038/ismej.2015.170openalex-snapshot

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

inferredcites →https://doi.org/10.1038/ismej.2016.178openalex-snapshot

Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents

inferredcites →https://doi.org/10.1038/ismej.2017.119openalex-snapshot

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/s41396-018-0306-7openalex-snapshot

A globally distributed Syndiniales parasite dominates the Southern Ocean micro-eukaryote community near the sea-ice edge

inferredcites →https://doi.org/10.1038/s41396-019-0506-9openalex-snapshot

Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean

inferredcites →https://doi.org/10.1038/s41579-019-0160-2openalex-snapshot

The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally

inferredcites →https://doi.org/10.1038/s41587-019-0209-9openalex-snapshot

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

inferredcites →https://doi.org/10.1073/pnas.1518395113openalex-snapshot

Quantifying dispersal from hydrothermal vent fields in the western Pacific Ocean

inferredcites →https://doi.org/10.1073/pnas.1612346114openalex-snapshot

Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow

inferredcites →https://doi.org/10.1073/pnas.95.17.9962openalex-snapshot

Cospeciation of chemoautotrophic bacteria and deep sea clams

inferredcites →https://doi.org/10.1080/14888386.2012.704839openalex-snapshot

Small phytoplankton in Arctic seas: vulnerability to climate change

inferredcites →https://doi.org/10.1093/jpe/rtm001openalex-snapshot

Studying beta diversity: ecological variation partitioning by multiple regression and canonical analysis

inferredcites →https://doi.org/10.1093/nar/gks1160openalex-snapshot

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

inferredcites →https://doi.org/10.1093/nar/gkv1276openalex-snapshot

GenBank

inferredcites →https://doi.org/10.1093/plankt/fbt123openalex-snapshot

Phylogenetic diversity of eukaryotic marine microbial plankton on the Scotian Shelf Northwestern Atlantic Ocean

inferredcites →https://doi.org/10.1098/rsos.171570openalex-snapshot

Deepest and hottest hydrothermal activity in the Okinawa Trough: the Yokosuka site at Yaeyama Knoll

inferredcites →https://doi.org/10.1101/552604openalex-snapshot

Marked changes in diversity and relative activity of picoeukaryotes with depth in the global ocean

inferredcites →https://doi.org/10.1111/1462-2920.14264openalex-snapshot

EukRef‐Ciliophora: a manually curated, phylogeny‐based database of small subunit rRNA gene sequences of ciliates

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04480.xopenalex-snapshot

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04932.xopenalex-snapshot

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

inferredcites →https://doi.org/10.1111/j.1462-2920.2006.01042.xopenalex-snapshot

Distribution and abundance of uncultured heterotrophic flagellates in the world oceans

inferredcites →https://doi.org/10.1111/j.1462-2920.2006.01158.xopenalex-snapshot

Eukaryotic diversity associated with carbonates and fluid–seawater interface in Lost City hydrothermal field

inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01243.xopenalex-snapshot

Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream)

inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01247.xopenalex-snapshot

Vertical distribution of picoeukaryotic diversity in the Sargasso Sea

inferredcites →https://doi.org/10.1111/j.1462-2920.2008.01731.xopenalex-snapshot

Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales ( Alveolata )

inferredcites →https://doi.org/10.1111/j.1462-2920.2008.01793.xopenalex-snapshot

Use of stable isotope‐labelled cells to identify active grazers of picocyanobacteria in ocean surface waters

inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02272.xopenalex-snapshot

Comparative analysis between protist communities from the deep‐sea pelagic ecosystem and specific deep hydrothermal habitats

inferredcites →https://doi.org/10.1111/j.1550-7408.2000.tb00067.xopenalex-snapshot

A Survey of Flagellate Diversity at Four Deep‐Sea Hydrothermal Vents in the Eastern Pacific Ocean Using Structural and Molecular Approaches

inferredcites →https://doi.org/10.1111/j.1550-7408.2008.00381.xopenalex-snapshot

Past President's Address: Protistan Biogeography: Why All The Fuss?1

inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00375.xopenalex-snapshot

Multivariate analyses in microbial ecology

inferredcites →https://doi.org/10.1111/j.2041-210x.2010.00078.xopenalex-snapshot

Testing the significance of canonical axes in redundancy analysis

inferredcites →https://doi.org/10.1111/jeu.12051openalex-snapshot

Diversity and Distributional Patterns of Ciliates in Guaymas Basin Hydrothermal Vent Sediments

inferredcites →https://doi.org/10.1111/jeu.12711openalex-snapshot

SSU ‐ rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent

inferredcites →https://doi.org/10.1126/science.1070710openalex-snapshot

Global Dispersal of Free-Living Microbial Eukaryote Species

inferredcites →https://doi.org/10.1126/science.1261605openalex-snapshot

Eukaryotic plankton diversity in the sunlit ocean

inferredcites →https://doi.org/10.1126/science.1262073openalex-snapshot

Determinants of community structure in the global plankton interactome

inferredcites →https://doi.org/10.1128/aem.00057-14openalex-snapshot

Investigating Microbial Eukaryotic Diversity from a Global Census: Insights from a Comparison of Pyrotag and Full-Length Sequences of 18S rRNA Genes

inferredcites →https://doi.org/10.1128/aem.67.7.2932-2941.2001openalex-snapshot

Study of Genetic Diversity of Eukaryotic Picoplankton in Different Oceanic Regions by Small-Subunit rRNA Gene Cloning and Sequencing

inferredcites →https://doi.org/10.1128/aem.68.9.4554-4558.2002openalex-snapshot

Unveiling the Organisms behind Novel Eukaryotic Ribosomal DNA Sequences from the Ocean

inferredcites →https://doi.org/10.1128/aem.70.6.3528-3534.2004openalex-snapshot

Phylogenetic and Ecological Analysis of Novel Marine Stramenopiles

inferredcites →https://doi.org/10.1146/annurev-micro-090110-102903openalex-snapshot

Eukaryotic Picoplankton in Surface Oceans

inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot

BLAST+: architecture and applications

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1186/s40168-018-0470-zopenalex-snapshot

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

inferredcites →https://doi.org/10.1371/journal.pone.0007657openalex-snapshot

Groups without Cultured Representatives Dominate Eukaryotic Picophytoplankton in the Oligotrophic South East Pacific Ocean

inferredcites →https://doi.org/10.1371/journal.pone.0059565openalex-snapshot

Picomonas judraskeda Gen. Et Sp. Nov.: The First Identified Member of the Picozoa Phylum Nov., a Widespread Group of Picoeukaryotes, Formerly Known as ‘Picobiliphytes’

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1371/journal.pone.0123095openalex-snapshot

Post-Drilling Changes in Seabed Landscape and Megabenthos in a Deep-Sea Hydrothermal System, the Iheya North Field, Okinawa Trough

inferredcites →https://doi.org/10.1594/pangaea.917894openalex-snapshot

InterRidge Global Database of Active Submarine Hydrothermal Vent Fields Version 3.4

inferredcites →https://doi.org/10.1641/0006-3568(2004)054[0777:tuossp]2.0.co;2openalex-snapshot

The Ubiquity of Small Species: Patterns of Local and Global Diversity

inferredcites →https://doi.org/10.2343/geochemj.2.0449openalex-snapshot

Geochemical characteristics of hydrothermal fluids at Hatoma Knoll in the southern Okinawa Trough

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

inferredcites →https://doi.org/10.3354/ame01697openalex-snapshot

Diversity and abundance of haptophytes in the East China Sea

inferredcites →https://doi.org/10.3389/fmicb.2013.00107openalex-snapshot

Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific

inferredcites →https://doi.org/10.3389/fmicb.2017.02224openalex-snapshot

Microbiome Datasets Are Compositional: And This Is Not Optional

inferredcites →https://doi.org/10.3389/fmicb.2018.01998openalex-snapshot

Intra-host Symbiont Diversity and Extended Symbiont Maintenance in Photosymbiotic Acantharea (Clade F)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.9612openalex-snapshot

Species assemblage networks identify regional connectivity pathways among hydrothermal vents in the Northwest Pacific

inferred← citeshttps://doi.org/10.1101/2022.07.20.500901openalex-snapshot

Hydrothermal Vent Species Assemblage Networks Identify Regional Connectivity Patterns in the Northwest Pacific

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