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Alternative splicing of circadian clock genes correlates with temperature in field-grown sugarcane

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4939-8944-7_17openalex-snapshot

High-Resolution RT-PCR Analysis of Alternative Barley Transcripts

inferredcites →https://doi.org/10.1007/bf02772676openalex-snapshot

Comparison of reference genes for quantitative real-time polymerase chain reaction analysis of gene expression in sugarcane

inferredcites →https://doi.org/10.1007/s00239-015-9665-0openalex-snapshot

Evolutionary Relationships Among Barley and Arabidopsis Core Circadian Clock and Clock-Associated Genes

inferredcites →https://doi.org/10.1007/s00253-011-3437-6openalex-snapshot

Scientific challenges of bioethanol production in Brazil

inferredcites →https://doi.org/10.1007/s00439-017-1791-xopenalex-snapshot

Intron retention as a component of regulated gene expression programs

inferredcites →https://doi.org/10.1007/s11103-012-9982-2openalex-snapshot

Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana

inferredcites →https://doi.org/10.1007/s12042-012-9103-zopenalex-snapshot

Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs

inferredcites →https://doi.org/10.1016/j.cell.2005.07.028openalex-snapshot

Mutually Exclusive Splicing of the Insect Dscam Pre-mRNA Directed by Competing Intronic RNA Secondary Structures

inferredcites →https://doi.org/10.1016/j.cell.2012.10.048openalex-snapshot

Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions

inferredcites →https://doi.org/10.1016/j.cell.2016.02.045openalex-snapshot

Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II

inferredcites →https://doi.org/10.1016/j.cub.2018.05.092openalex-snapshot

Circadian Entrainment in Arabidopsis by the Sugar-Responsive Transcription Factor bZIP63

inferredcites →https://doi.org/10.1016/j.devcel.2018.02.022openalex-snapshot

The Circadian Clock Sets the Time of DNA Replication Licensing to Regulate Growth in Arabidopsis

inferredcites →https://doi.org/10.1016/j.jmb.2016.04.017openalex-snapshot

Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing

inferredcites →https://doi.org/10.1016/j.jtbi.2004.11.038openalex-snapshot

Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana

inferredcites →https://doi.org/10.1016/j.molcel.2018.12.005openalex-snapshot

Light Regulates Plant Alternative Splicing through the Control of Transcriptional Elongation

inferredcites →https://doi.org/10.1016/j.molp.2014.10.011openalex-snapshot

Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis

inferredcites →https://doi.org/10.1016/j.pbi.2015.02.008openalex-snapshot

Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress

inferredcites →https://doi.org/10.1016/j.plantsci.2011.09.006openalex-snapshot

Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity

inferredcites →https://doi.org/10.1016/j.tplants.2004.12.001openalex-snapshot

The plant clock shows its metal: circadian regulation of cytosolic free Ca2+

inferredcites →https://doi.org/10.1016/j.tplants.2010.12.003openalex-snapshot

Starch and the clock: the dark side of plant productivity

inferredcites →https://doi.org/10.1016/j.tplants.2011.06.001openalex-snapshot

Competitive inhibition of transcription factors by small interfering peptides

inferredcites →https://doi.org/10.1016/j.tplants.2012.06.001openalex-snapshot

Alternative splicing in plants – coming of age

inferredcites →https://doi.org/10.1016/j.tplants.2013.11.007openalex-snapshot

Wheels within wheels: the plant circadian system

inferredcites →https://doi.org/10.1016/j.tplants.2019.02.006openalex-snapshot

Perspective on Alternative Splicing and Proteome Complexity in Plants

inferredcites →https://doi.org/10.1038/msb.2012.6openalex-snapshot

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

inferredcites →https://doi.org/10.1038/msb4100101openalex-snapshot

A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9

inferredcites →https://doi.org/10.1038/nature07523openalex-snapshot

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

inferredcites →https://doi.org/10.1038/nature12603openalex-snapshot

Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

inferredcites →https://doi.org/10.1038/nature13919openalex-snapshot

Tissue-specific clocks in Arabidopsis show asymmetric coupling

inferredcites →https://doi.org/10.1038/nrm3525openalex-snapshot

Alternative splicing: a pivotal step between eukaryotic transcription and translation

inferredcites →https://doi.org/10.1038/s41467-018-05051-5openalex-snapshot

A mosaic monoploid reference sequence for the highly complex genome of sugarcane

inferredcites →https://doi.org/10.1038/s41588-018-0237-2openalex-snapshot

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

inferredcites →https://doi.org/10.1038/s41598-020-63440-7openalex-snapshot

Rhythms of Transcription in Field-Grown Sugarcane Are Highly Organ Specific

inferredcites →https://doi.org/10.1038/srep00029openalex-snapshot

Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor

inferredcites →https://doi.org/10.1038/srep03399openalex-snapshot

SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids

inferredcites →https://doi.org/10.1071/pp9950661openalex-snapshot

Temporal and Spatial Regulation of Sucrose Accumulation in the Sugarcane Stem

inferredcites →https://doi.org/10.1073/pnas.0914299107openalex-snapshot

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

inferredcites →https://doi.org/10.1073/pnas.1209148109openalex-snapshot

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses

inferredcites →https://doi.org/10.1073/pnas.1805524115openalex-snapshot

Multiple feedback loops of the Arabidopsis circadian clock provide rhythmic robustness across environmental conditions

inferredcites →https://doi.org/10.1093/jxb/erh093openalex-snapshot

Genome remodelling in three modern S. officinarumxS. spontaneum sugarcane cultivars

inferredcites →https://doi.org/10.1093/jxb/erx220openalex-snapshot

Getting back to nature: a reality check for experiments in controlled environments

inferredcites →https://doi.org/10.1093/jxb/ery276openalex-snapshot

Response of Arabidopsis primary metabolism and circadian clock to low night temperature in a natural light environment

inferredcites →https://doi.org/10.1093/nar/gkr932openalex-snapshot

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

inferredcites →https://doi.org/10.1093/nar/gkz121openalex-snapshot

Does co-transcriptional regulation of alternative splicing mediate plant stress responses?

inferredcites →https://doi.org/10.1093/pcp/pcl043openalex-snapshot

Comparative Overviews of Clock-Associated Genes of Arabidopsis thaliana and Oryza sativa

inferredcites →https://doi.org/10.1101/gad.2.6.754openalex-snapshot

Splice site selection, rate of splicing, and alternative splicing on nascent transcripts.

inferredcites →https://doi.org/10.1101/gr.100677.109openalex-snapshot

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

inferredcites →https://doi.org/10.1101/gr.134106.111openalex-snapshot

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.105.061903openalex-snapshot

Daylength and Circadian Effects on Starch Degradation and Maltose Metabolism

inferredcites →https://doi.org/10.1104/pp.108.118059openalex-snapshot

Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome

inferredcites →https://doi.org/10.1105/tpc.107.054775openalex-snapshot

PRR3 Is a Vascular Regulator of TOC1 Stability in theArabidopsisCircadian Clock

inferredcites →https://doi.org/10.1105/tpc.109.072892openalex-snapshot

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock

inferredcites →https://doi.org/10.1105/tpc.110.074674openalex-snapshot

The Conserved Splicing Factor SUA Controls Alternative Splicing of the Developmental Regulator ABI3 in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.110.081356openalex-snapshot

Arabidopsis Floral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation

inferredcites →https://doi.org/10.1105/tpc.111.083238openalex-snapshot

Os-GIGANTEAConfers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field

inferredcites →https://doi.org/10.1105/tpc.111.092163openalex-snapshot

MaizeRough Endosperm3Encodes an RNA Splicing Factor Required for Endosperm Cell Differentiation and Has a Nonautonomous Effect on Embryo Development

inferredcites →https://doi.org/10.1105/tpc.111.093948openalex-snapshot

Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes

inferredcites →https://doi.org/10.1105/tpc.112.098723openalex-snapshot

A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.112.104828openalex-snapshot

Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 Causes Circadian Clock Defects

inferredcites →https://doi.org/10.1105/tpc.113.110353openalex-snapshot

A Major Facilitator Superfamily Transporter Plays a Dual Role in Polar Auxin Transport and Drought Stress Tolerance in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.113.113803openalex-snapshot

Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses

inferredcites →https://doi.org/10.1105/tpc.113.115980openalex-snapshot

A Role for CHH Methylation in the Parent-of-Origin Effect on Altered Circadian Rhythms and Biomass Heterosis inArabidopsisIntraspecific Hybrids

inferredcites →https://doi.org/10.1105/tpc.113.117523openalex-snapshot

Complexity of the Alternative Splicing Landscape in Plants

inferredcites →https://doi.org/10.1105/tpc.113.118075openalex-snapshot

Imaging of Endogenous Messenger RNA Splice Variants in Living Cells Reveals Nuclear Retention of Transcripts Inaccessible to Nonsense-Mediated Decay in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.114.122739openalex-snapshot

Global Dissection of Alternative Splicing in Paleopolyploid Soybean

inferredcites →https://doi.org/10.1105/tpc.114.130773openalex-snapshot

Genome-Wide Analysis of Alternative Splicing in Zea mays : Landscape and Genetic Regulation

inferredcites →https://doi.org/10.1105/tpc.16.00223openalex-snapshot

The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing

inferredcites →https://doi.org/10.1105/tpc.18.00177openalex-snapshot

Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome

inferredcites →https://doi.org/10.1111/j.1365-313x.2006.03020.xopenalex-snapshot

Alternative splicing of pre‐mRNAs of Arabidopsis serine/arginine‐rich proteins: regulation by hormones and stresses

inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03392.xopenalex-snapshot

Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03650.xopenalex-snapshot

CLO/GFA1 and ATO are novel regulators of gametic cell fate in plants

inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04866.xopenalex-snapshot

Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation

inferredcites →https://doi.org/10.1111/j.1744-7909.2008.00783.xopenalex-snapshot

GAMETOPHYTIC FACTOR 1, Involved in Pre‐mRNA Splicing, Is Essential for Megagametogenesis and Embryogenesis in Arabidopsis

inferredcites →https://doi.org/10.1111/tpj.13746openalex-snapshot

Genome‐wide characterization of differential transcript usage in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/tpj.13781openalex-snapshot

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

inferredcites →https://doi.org/10.1111/tpj.14142openalex-snapshot

Cis‐regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis

inferredcites →https://doi.org/10.1126/science.1061320openalex-snapshot

Reciprocal Regulation Between TOC1 and LHY / CCA1 Within the Arabidopsis Circadian Clock

inferredcites →https://doi.org/10.1126/science.1115581openalex-snapshot

Plant Circadian Clocks Increase Photosynthesis, Growth, Survival, and Competitive Advantage

inferredcites →https://doi.org/10.1146/annurev-arplant-043014-115619openalex-snapshot

The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution

inferredcites →https://doi.org/10.1146/annurev.arplant.043008.092054openalex-snapshot

The Circadian System in Higher Plants

inferredcites →https://doi.org/10.1159/000082378openalex-snapshot

Unraveling the genome structure of polyploids using FISH and GISH; examples of sugarcane and banana

inferredcites →https://doi.org/10.1186/1471-2164-15-431openalex-snapshot

Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis

inferredcites →https://doi.org/10.1186/1471-2164-15-540openalex-snapshot

Building the sugarcane genome for biotechnology and identifying evolutionary trends

inferredcites →https://doi.org/10.1186/1471-2229-10-126openalex-snapshot

Coordination of the maize transcriptome by a conserved circadian clock

inferredcites →https://doi.org/10.1186/1471-2229-11-10openalex-snapshot

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonicarice

inferredcites →https://doi.org/10.1186/1471-2229-14-136openalex-snapshot

Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis

inferredcites →https://doi.org/10.1186/1745-6150-7-20openalex-snapshot

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

inferredcites →https://doi.org/10.1186/s12864-015-1914-5openalex-snapshot

Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops

inferredcites →https://doi.org/10.12688/f1000research.11859.1openalex-snapshot

Draft genome sequencing of the sugarcane hybrid SP80-3280

inferredcites →https://doi.org/10.1371/journal.pgen.1002662openalex-snapshot

Genome-Wide Patterns of Arabidopsis Gene Expression in Nature

inferredcites →https://doi.org/10.1371/journal.pgen.1006197openalex-snapshot

Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids

inferredcites →https://doi.org/10.1371/journal.pone.0030524openalex-snapshot

Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function

inferredcites →https://doi.org/10.1371/journal.pone.0071847openalex-snapshot

Circadian Rhythms of Sense and Antisense Transcription in Sugarcane, a Highly Polyploid Crop

inferredcites →https://doi.org/10.1371/journal.pone.0152824openalex-snapshot

Involvement of Alternative Splicing in Barley Seed Germination

inferredcites →https://doi.org/10.1371/journal.pone.0168028openalex-snapshot

Alternative Splicing of Barley Clock Genes in Response to Low Temperature

inferredcites →https://doi.org/10.1534/g3.112.002162openalex-snapshot

Ploidy and Hybridity Effects on Growth Vigor and Gene Expression inArabidopsis thalianaHybrids and Their Parents

inferredcites →https://doi.org/10.3389/fbioe.2015.00033openalex-snapshot

Genome-Wide Identification of Evolutionarily Conserved Alternative Splicing Events in Flowering Plants

inferredcites →https://doi.org/10.3389/fpls.2015.00648openalex-snapshot

Circadian regulation of abiotic stress tolerance in plants

inferredcites →https://doi.org/10.3389/fpls.2016.01036openalex-snapshot

Partial Activation of SA- and JA-Defensive Pathways in Strawberry upon Colletotrichum acutatum Interaction

inferredcites →https://doi.org/10.3389/fpls.2018.01174openalex-snapshot

Alternative Splicing as a Regulator of Early Plant Development

inferredcites →https://doi.org/10.3389/fpls.2019.00235openalex-snapshot

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

inferredcites →https://doi.org/10.3390/biology8010014openalex-snapshot

The Plant Circadian Oscillator

inferredcites →https://doi.org/10.3390/ijms18020432openalex-snapshot

Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants

inferredcites →https://doi.org/10.4161/psb.21300openalex-snapshot

CCA1 alternative splicing as a way of linking the circadian clock to temperature response in Arabidopsis

inferredcites →https://doi.org/10.4161/psb.21491openalex-snapshot

Thermoplasticity in the plant circadian clock

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1186/s12870-022-03870-9openalex-snapshot

Genome-scale analysis of Arabidopsis splicing-related protein kinase families reveals roles in abiotic stress adaptation

inferred← citeshttps://doi.org/10.3389/fgene.2019.01239openalex-snapshot

Circadian Regulation of the Plant Transcriptome Under Natural Conditions

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