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Microbial community dynamics of surface water in British Columbia, Canada
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/hyp.7422openalex-snapshot
Does upward seepage of river water and storm water runoff determine water quality of urban drainage systems in lowland areas? A case study for the Rhine–Meuse delta
inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1007/978-1-4419-9386-1openalex-snapshot
Microbial Source Tracking: Methods, Applications, and Case Studies
inferredcites →https://doi.org/10.1007/978-1-4419-9386-1_17openalex-snapshot
Environmental Persistence and Naturalization of Fecal Indicator Organisms
inferredcites →https://doi.org/10.1007/978-3-642-30197-1_238openalex-snapshot
The Family Comamonadaceae
inferredcites →https://doi.org/10.1007/978-3-642-38954-2_130openalex-snapshot
The Family Flavobacteriaceae
inferredcites →https://doi.org/10.1007/978-3-642-39044-9_274openalex-snapshot
The Family Campylobacteraceae
inferredcites →https://doi.org/10.1007/s10661-008-0734-3openalex-snapshot
Bacteria holding times for fecal coliform by mFC agar method and total coliform and Escherichia coli by Colilert®-18 Quanti-Tray® method
inferredcites →https://doi.org/10.1007/s10661-014-4237-0openalex-snapshot
Pyrosequencing analysis of roof-harvested rainwater and river water used for domestic purposes in Luthengele village in the Eastern Cape Province of South Africa
inferredcites →https://doi.org/10.1016/0003-2697(90)90598-4openalex-snapshot
Standard methods: For the examination of water and waste water
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2005.03.003openalex-snapshot
Relevant aspects of Arcobacter spp. as potential foodborne pathogen
inferredcites →https://doi.org/10.1016/j.resmic.2006.12.012openalex-snapshot
Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond
inferredcites →https://doi.org/10.1016/j.watres.2017.08.032openalex-snapshot
A highly specific Escherichia coli qPCR and its comparison with existing methods for environmental waters
inferredcites →https://doi.org/10.1016/s0167-7012(02)00150-1openalex-snapshot
Application of the fluorogenic probe technique (TaqMan PCR) to the detection of Enterococcus spp. and Escherichia coli in water samples
inferredcites →https://doi.org/10.1016/s0273-1223(98)00820-8openalex-snapshot
Evidence that tropical soil environment can support the growth of
inferredcites →https://doi.org/10.1021/acs.est.6b02657openalex-snapshot
Quantitative PCR Profiling of Escherichia coli in Livestock Feces Reveals Increased Population Resilience Relative to Culturable Counts under Temperature Extremes
inferredcites →https://doi.org/10.1021/es0257164openalex-snapshot
Real-Time PCR Quantification of Nitrifying Bacteria in a Municipal Wastewater Treatment Plant
inferredcites →https://doi.org/10.1038/ismej.2010.80openalex-snapshot
Survival of Escherichia coli in the environment: fundamental and public health aspects
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/ismej.2014.97openalex-snapshot
A single genus in the gut microbiome reflects host preference and specificity
inferredcites →https://doi.org/10.1038/nature09944openalex-snapshot
Enterotypes of the human gut microbiome
inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/nrmicro2265openalex-snapshot
Molecular mechanisms of Escherichia coli pathogenicity
inferredcites →https://doi.org/10.1056/nejm199407213310304openalex-snapshot
A Massive Outbreak in Milwaukee of Cryptosporidium Infection Transmitted through the Public Water Supply
inferredcites →https://doi.org/10.1056/nejm199410133311527openalex-snapshot
A Massive Outbreak in Milwaukee of Cryptosporidium Infection Transmitted through the Public Water Supply
inferredcites →https://doi.org/10.1093/bioinformatics/btp636openalex-snapshot
PyNAST: a flexible tool for aligning sequences to a template alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/femsec/fix120openalex-snapshot
Microbial diversity in an intensively managed landscape is structured by landscape connectivity
inferredcites →https://doi.org/10.1093/gigascience/giy140openalex-snapshot
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
inferredcites →https://doi.org/10.1093/nar/gkn689openalex-snapshot
rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea
inferredcites →https://doi.org/10.1099/ijs.0.64285-0openalex-snapshot
Balneola vulgaris gen. nov., sp. nov., a member of the phylum Bacteroidetes from the north-western Mediterranean Sea
inferredcites →https://doi.org/10.1101/gr.112730.110openalex-snapshot
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
inferredcites →https://doi.org/10.1111/1462-2920.12092openalex-snapshot
Sewage reflects the distribution of human faecal L achnospiraceae
inferredcites →https://doi.org/10.1111/1758-2229.12441openalex-snapshot
Redox stability regulates community structure of active microbes at the sediment–water interface
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02519.xopenalex-snapshot
Characterization of the cryptic Escherichia lineages: rapid identification and prevalence
inferredcites →https://doi.org/10.1111/j.1472-765x.2006.01854.xopenalex-snapshot
Evaluation of the methods for enumerating coliform bacteria from water samples using precise reference standards
inferredcites →https://doi.org/10.1111/j.1574-6941.2010.01015.xopenalex-snapshot
Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake
inferredcites →https://doi.org/10.1111/jam.12425openalex-snapshot
Prevalence, concentration and genotypes ofCampylobacter jejuniin faeces from dairy herds managed in farm systems with or without housing
inferredcites →https://doi.org/10.1111/zph.12014openalex-snapshot
Survival of Escherichia coli, Enterococci and Campylobacter jejuni in Canada Goose Faeces on Pasture
inferredcites →https://doi.org/10.1128/aem.00651-10openalex-snapshot
Comparison of Rapid Quantitative PCR-Based and Conventional Culture-Based Methods for Enumeration of Enterococcus spp. and Escherichia coli in Recreational Waters
inferredcites →https://doi.org/10.1128/aem.01262-09openalex-snapshot
Cryptic Lineages of the Genus Escherichia
inferredcites →https://doi.org/10.1128/aem.01329-10openalex-snapshot
Survival of Escherichia coli , Enterococci, and Campylobacter spp. in Sheep Feces on Pastures
inferredcites →https://doi.org/10.1128/aem.01524-15openalex-snapshot
Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups
inferredcites →https://doi.org/10.1128/aem.02068-17openalex-snapshot
Environmental Stress-Induced Bacterial Lysis and Extracellular DNA Release Contribute to Campylobacter jejuni Biofilm Formation
inferredcites →https://doi.org/10.1128/aem.02337-10openalex-snapshot
Rapid Concentration and Molecular Enrichment Approach for Sensitive Detection of Escherichia coli and Shigella Species in Potable Water Samples
inferredcites →https://doi.org/10.1128/aem.02345-10openalex-snapshot
Metagenomic Analyses: Past and Future Trends
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/aem.62.2.340-346.1996openalex-snapshot
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
inferredcites →https://doi.org/10.1128/aem.67.2.623-631.2001openalex-snapshot
Novel Bacterial Lineages at the (Sub)Division Level as Detected by Signature Nucleotide-Targeted Recovery of 16S rRNA Genes from Bulk Soil and Rice Roots of Flooded Rice Microcosms
inferredcites →https://doi.org/10.1128/aem.69.10.6201-6207.2003openalex-snapshot
Assessment of the Effects of Holding Time and Temperature on Escherichia coli Densities in Surface Water Samples
inferredcites →https://doi.org/10.1128/aem.70.2.814-821.2004openalex-snapshot
Effect of Environmental Factors on the Relationship between Concentrations of Coprostanol and Fecal Indicator Bacteria in Tropical (Mekong Delta) and Temperate (Tokyo) Freshwaters
inferredcites →https://doi.org/10.1128/aem.71.10.5999-6007.2005openalex-snapshot
Comparison of Bacteroides-Prevotella 16S rRNA Genetic Markers for Fecal Samples from Different Animal Species
inferredcites →https://doi.org/10.1128/aem.72.4.2765-2774.2006openalex-snapshot
Quantitative PCR Targeting 16S rRNA and Reductive Dehalogenase Genes Simultaneously Monitors MultipleDehalococcoidesStrains
inferredcites →https://doi.org/10.1155/2007/180308openalex-snapshot
Microbiological Guideline Values for Recreational Bathing in Canada: Time for Change?
inferredcites →https://doi.org/10.1186/1471-2105-13-31openalex-snapshot
PANDAseq: paired-end assembler for illumina sequences
inferredcites →https://doi.org/10.1186/1471-2164-14-s1-s7openalex-snapshot
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
inferredcites →https://doi.org/10.1186/s12859-015-0788-5openalex-snapshot
Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities
inferredcites →https://doi.org/10.1186/s40168-016-0160-7openalex-snapshot
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle
inferredcites →https://doi.org/10.1371/journal.pone.0004522openalex-snapshot
Avian Incubation Inhibits Growth and Diversification of Bacterial Assemblages on Eggs
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0042599openalex-snapshot
Risk Factors for Campylobacteriosis of Chicken, Ruminant, and Environmental Origin: A Combined Case-Control and Source Attribution Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0047035openalex-snapshot
Small Changes in pH Have Direct Effects on Marine Bacterial Community Composition: A Microcosm Approach
inferredcites →https://doi.org/10.1371/journal.pone.0148296openalex-snapshot
Microbial Community Profile and Water Quality in a Protected Area of the Caatinga Biome
inferredcites →https://doi.org/10.1371/journal.pone.0178755openalex-snapshot
Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries
inferredcites →https://doi.org/10.1371/journal.pone.0190126openalex-snapshot
16S rRNA analysis of diversity of manure microbial community in dairy farm environment
inferredcites →https://doi.org/10.3354/meps311067openalex-snapshot
Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters
inferredcites →https://doi.org/10.3382/ps.2012-02496openalex-snapshot
Survival of Campylobacter jejuni in naturally and artificially contaminated laying hen feces
inferredcites →https://doi.org/10.3389/fmicb.2015.00308openalex-snapshot
A short review of fecal indicator bacteria in tropical aquatic ecosystems: knowledge gaps and future directions
inferredcites →https://doi.org/10.3389/fmicb.2015.01028openalex-snapshot
A unique assemblage of cosmopolitan freshwater bacteria and higher community diversity differentiate an urbanized estuary from oligotrophic Lake Michigan
inferredcites →https://doi.org/10.3389/fmicb.2017.01313openalex-snapshot
Spatial and Temporal Microbial Patterns in a Tropical Macrotidal Estuary Subject to Urbanization
inferredcites →https://doi.org/10.3402/iee.v6.31685openalex-snapshot
The impact of environmental conditions on Campylobacter jejuni survival in broiler faeces and litter
inferredcites →https://doi.org/10.5864/d2015-011openalex-snapshot
Evaluating appropriate maximum holding times for private well water samples
inferredcites →https://doi.org/10.7717/peerj.545openalex-snapshot
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.watres.2022.118106openalex-snapshot
Microbiomes in drinking water treatment and distribution: A meta-analysis from source to tap
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