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SIZ1 is a nuclear host target of the nematode effector GpRbp1 from Globodera pallida that acts as a negative regulator of basal plant defense to cyst nematodes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471250953.bi0506s47openalex-snapshot
Comparative Protein Structure Modeling Using MODELLER
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Protein Posttranslational Modifications: The Chemistry of Proteome Diversifications
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Comparative Protein Structure Modeling Using MODELLER
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The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome
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Scalable molecular dynamics with NAMD
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MolProbity: More and better reference data for improved all‐atom structure validation
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Nematode feeding sites: unique organs in plant roots
inferredcites →https://doi.org/10.1007/s10059-009-0007-1openalex-snapshot
The Arabidopsis AtLEC Gene Encoding a Lectin-like Protein Is Up-Regulated by Multiple Stimuli Including Developmental Signal, Wounding, Jasmonate, Ethylene, and Chitin Elicitor
inferredcites →https://doi.org/10.1016/0263-7855(96)00018-5openalex-snapshot
VMD: Visual molecular dynamics
inferredcites →https://doi.org/10.1016/bs.abr.2014.12.002openalex-snapshot
Cell Wall Alterations in Nematode-Infected Roots
inferredcites →https://doi.org/10.1016/j.bpj.2016.11.971openalex-snapshot
CHARMM36: An Improved Force Field for Folded and Intrinsically Disordered Proteins
inferredcites →https://doi.org/10.1016/j.chom.2013.01.006openalex-snapshot
Xanthomonas Type III Effector XopD Desumoylates Tomato Transcription Factor SlERF4 to Suppress Ethylene Responses and Promote Pathogen Growth
inferredcites →https://doi.org/10.1016/j.jmb.2016.09.004openalex-snapshot
Structural Basis for the Interaction between the IUS-SPRY Domain of RanBPM and DDX-4 in Germ Cell Development
inferredcites →https://doi.org/10.1016/j.molp.2018.12.002openalex-snapshot
SIZ1-Mediated SUMOylation of TPR1 Suppresses Plant Immunity in Arabidopsis
inferredcites →https://doi.org/10.1016/j.pbi.2011.03.012openalex-snapshot
How nematodes manipulate plant development pathways for infection
inferredcites →https://doi.org/10.1016/j.pbi.2018.06.006openalex-snapshot
SUMOylation: re-wiring the plant nucleus during stress and development
inferredcites →https://doi.org/10.1016/j.pmpp.2005.09.001openalex-snapshot
Ranbpm homologue genes characterised in the cyst nematodes Globodera pallida and Globodera ‘mexicana’
inferredcites →https://doi.org/10.1038/35013076openalex-snapshot
Targeted destabilization of HY5 during light-regulated development of Arabidopsis
inferredcites →https://doi.org/10.1038/nature01696openalex-snapshot
LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1
inferredcites →https://doi.org/10.1038/nature03588openalex-snapshot
Insights into E3 ligase activity revealed by a SUMO–RanGAP1–Ubc9–Nup358 complex
inferredcites →https://doi.org/10.1038/nbt.1482openalex-snapshot
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
inferredcites →https://doi.org/10.1038/nbt.3122openalex-snapshot
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
inferredcites →https://doi.org/10.1038/nclimate1990openalex-snapshot
Crop pests and pathogens move polewards in a warming world
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/srep44090openalex-snapshot
Sumoylation stabilizes RACK1B and enhance its interaction with RAP2.6 in the abscisic acid response
inferredcites →https://doi.org/10.1046/j.1365-313x.1991.00245.xopenalex-snapshot
Arabidopsis thaliana as a new model host for plant-parasitic nematodes
inferredcites →https://doi.org/10.1073/pnas.0500778102openalex-snapshot
The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses
inferredcites →https://doi.org/10.1073/pnas.1319985110openalex-snapshot
Identification of Arabidopsis SUMO-interacting proteins that regulate chromatin activity and developmental transitions
inferredcites →https://doi.org/10.1074/jbc.m009476200openalex-snapshot
SUMO-1 Conjugation in Vivo Requires Both a Consensus Modification Motif and Nuclear Targeting
inferredcites →https://doi.org/10.1074/jbc.m113.486845openalex-snapshot
Identification of a Non-covalent Ternary Complex Formed by PIAS1, SUMO1, and UBC9 Proteins Involved in Transcriptional Regulation
inferredcites →https://doi.org/10.1074/jbc.m209694200openalex-snapshot
The Small Ubiquitin-like Modifier (SUMO) Protein Modification System in Arabidopsis
inferredcites →https://doi.org/10.1074/mcp.m112.025056openalex-snapshot
Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation in Arabidopsis
inferredcites →https://doi.org/10.1083/jcb.140.3.499openalex-snapshot
SUMO-1 Modification and Its Role in Targeting the Ran GTPase-activating Protein, RanGAP1, to the Nuclear Pore Complex
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/bioinformatics/btv403openalex-snapshot
JASSA: a comprehensive tool for prediction of SUMOylation sites and SIMs
inferredcites →https://doi.org/10.1093/bioinformatics/btx218openalex-snapshot
Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility
inferredcites →https://doi.org/10.1093/jxb/erw092openalex-snapshot
SUMO proteases: uncovering the roles of deSUMOylation in plants
inferredcites →https://doi.org/10.1093/jxb/ery019openalex-snapshot
Genome-wide association study uncovers a novel QTL allele of AtS40-3 that affects the sex ratio of cyst nematodes in Arabidopsis
inferredcites →https://doi.org/10.1093/jxb/ery295openalex-snapshot
Orchestrating the proteome with post-translational modifications
inferredcites →https://doi.org/10.1093/nar/gki396openalex-snapshot
SCRATCH: a protein structure and structural feature prediction server
inferredcites →https://doi.org/10.1093/nar/gkl124openalex-snapshot
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
inferredcites →https://doi.org/10.1093/nar/gkr1090openalex-snapshot
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
inferredcites →https://doi.org/10.1093/nar/gku1200openalex-snapshot
Araport: the Arabidopsis Information Portal
inferredcites →https://doi.org/10.1093/nar/gku383openalex-snapshot
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs
inferredcites →https://doi.org/10.1093/nar/gkv332openalex-snapshot
JPred4: a protein secondary structure prediction server
inferredcites →https://doi.org/10.1093/nar/gkw306openalex-snapshot
RaptorX-Property: a web server for protein structure property prediction
inferredcites →https://doi.org/10.1093/nar/gkz297openalex-snapshot
The PSIPRED Protein Analysis Workbench: 20 years on
inferredcites →https://doi.org/10.1093/pcp/pcv149openalex-snapshot
SIZ1-Dependent Post-Translational Modification by SUMO Modulates Sugar Signaling and Metabolism inArabidopsis thaliana
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
inferredcites →https://doi.org/10.1094/mpmi-02-17-0041-ropenalex-snapshot
Sumoylation E3 Ligase SIZ1 Modulates Plant Immunity Partly through the Immune Receptor Gene SNC1 in Arabidopsis
inferredcites →https://doi.org/10.1094/mpmi-05-17-0104-ropenalex-snapshot
Proteomic Study of SUMOylation During Solanum tuberosum–Phytophthora infestans Interactions
inferredcites →https://doi.org/10.1094/mpmi-21-4-0424openalex-snapshot
Cyst Nematode Parasitism of Arabidopsis thaliana Is Inhibited by Salicylic Acid (SA) and Elicits Uncoupled SA-Independent Pathogenesis-Related Gene Expression in Roots
inferredcites →https://doi.org/10.1094/mpmi-22-3-0330openalex-snapshot
A Secreted SPRY Domain-Containing Protein (SPRYSEC) from the Plant-Parasitic NematodeGlobodera rostochiensisInteracts with a CC-NB-LRR Protein from a Susceptible Tomato
inferredcites →https://doi.org/10.1104/pp.109.143719openalex-snapshot
Specific Domain Structures Control Abscisic Acid-, Salicylic Acid-, and Stress-Mediated SIZ1 Phenotypes
inferredcites →https://doi.org/10.1104/pp.110.165191openalex-snapshot
SIZ1 Regulation of Phosphate Starvation-Induced Root Architecture Remodeling Involves the Control of Auxin Accumulation
inferredcites →https://doi.org/10.1104/pp.111.178996openalex-snapshot
Arabidopsis SUMO E3 Ligase SIZ1 Is Involved in Excess Copper Tolerance
inferredcites →https://doi.org/10.1104/pp.15.00397openalex-snapshot
GENERAL CONTROL NONREPRESSED PROTEIN5-Mediated Histone Acetylation of FERRIC REDUCTASE DEFECTIVE3 Contributes to Iron Homeostasis in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.18.00683openalex-snapshot
The Ubiquitin E3 Ligase RHA2b Promotes Degradation of MYB30 in Abscisic Acid Signaling
inferredcites →https://doi.org/10.1104/pp.18.00910openalex-snapshot
The SUMO Conjugation Complex Self-Assembles into Nuclear Bodies Independent of SIZ1 and COP1
inferredcites →https://doi.org/10.1104/pp.18.01067openalex-snapshot
Phytoparasitic Nematode Control of Plant Hormone Pathways
inferredcites →https://doi.org/10.1105/tpc.104.030205openalex-snapshot
Light Regulates COP1-Mediated Degradation of HFR1, a Transcription Factor Essential for Light Signaling in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.106.049981openalex-snapshot
The Arabidopsis E3 SUMO Ligase SIZ1 Regulates Plant Growth and Drought Responses
inferredcites →https://doi.org/10.1105/tpc.109.070961openalex-snapshot
Arabidopsis Small Ubiquitin-Like Modifier Paralogs Have Distinct Functions in Development and Defense
inferredcites →https://doi.org/10.1105/tpc.17.00993openalex-snapshot
SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress
inferredcites →https://doi.org/10.1111/j.1364-3703.2009.00585.xopenalex-snapshot
Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida
inferredcites →https://doi.org/10.1111/j.1364-3703.2011.00769.xopenalex-snapshot
The evolution of the Gp‐Rbp‐1 gene in Globodera pallida includes multiple selective replacements
inferredcites →https://doi.org/10.1111/j.1365-313x.1991.00245.xopenalex-snapshot
Arabidopsis thaliana as a new model host for plant‐parasitic nematodes
inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02016.xopenalex-snapshot
mapman : a user‐driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02947.xopenalex-snapshot
Salicylic acid‐mediated innate immunity in Arabidopsis is regulated by SIZ1 SUMO E3 ligase
inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03384.xopenalex-snapshot
A cysteine‐rich receptor‐like kinase NCRK and a pathogen‐induced protein kinase RBK1 are Rop GTPase interactors
inferredcites →https://doi.org/10.1111/j.1469-8137.2012.04266.xopenalex-snapshot
The ubiquitin–proteasome system: central modifier of plant signalling
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/jipb.12514openalex-snapshot
A novel tomato SUMO E3 ligase, SlSIZ1, confers drought tolerance in transgenic tobacco
inferredcites →https://doi.org/10.1111/mpp.12304openalex-snapshot
The A rabidopsis immune regulator SRFR 1 dampens defences against herbivory by S podoptera exigua and parasitism by H eterodera schachtii
inferredcites →https://doi.org/10.1111/mpp.12625openalex-snapshot
Fifty shades of SUMO: its role in immunity and at the fulcrum of the growth–defence balance
inferredcites →https://doi.org/10.1111/mpp.12745openalex-snapshot
Mediator of tolerance to abiotic stress ERF6 regulates susceptibility of Arabidopsis to Meloidogyne incognita
inferredcites →https://doi.org/10.1111/nph.12323openalex-snapshot
Nematode effector proteins: an emerging paradigm of parasitism
inferredcites →https://doi.org/10.1111/nph.13395openalex-snapshot
Role of stress‐related hormones in plant defence during early infection of the cyst nematode Heterodera schachtii in Arabidopsis
inferredcites →https://doi.org/10.1111/nph.15400openalex-snapshot
Canonical and noncanonical ethylene signaling pathways that regulate Arabidopsis susceptibility to the cyst nematode Heterodera schachtii
inferredcites →https://doi.org/10.1111/pbi.12108openalex-snapshot
Overexpression of a soybean salicylic acid methyltransferase gene confers resistance to soybean cyst nematode
inferredcites →https://doi.org/10.1111/pce.13728openalex-snapshot
Host factors influence the sex of nematodes parasitizing roots of Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/tpj.13415openalex-snapshot
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
inferredcites →https://doi.org/10.1111/tpj.13635openalex-snapshot
An Arabidopsis kinase cascade influences auxin‐responsive cell expansion
inferredcites →https://doi.org/10.1128/jvi.02566-10openalex-snapshot
Interaction between Geminivirus Replication Protein and the SUMO-Conjugating Enzyme Is Required for Viral Infection
inferredcites →https://doi.org/10.1128/jvi.02828-12openalex-snapshot
SCE1, the SUMO-Conjugating Enzyme in Plants That Interacts with NIb, the RNA-Dependent RNA Polymerase of Turnip Mosaic Virus, Is Required for Viral Infection
inferredcites →https://doi.org/10.1128/jvi.78.6.2758-2769.2004openalex-snapshot
Interaction between a Geminivirus Replication Protein and the Plant Sumoylation System
inferredcites →https://doi.org/10.1146/annurev-cellbio-092910-154055openalex-snapshot
Hormonal Modulation of Plant Immunity
inferredcites →https://doi.org/10.1146/annurev.arplant.55.031903.141801openalex-snapshot
THE UBIQUITIN 26S PROTEASOME PROTEOLYTIC PATHWAY
inferredcites →https://doi.org/10.1146/annurev.phyto.27.1.123openalex-snapshot
Disease-Inducing Secretions Of Plant-Parasitic Nematodes
inferredcites →https://doi.org/10.1163/156854107781352034openalex-snapshot
Identification of reference genes for qRT-PCR studies of gene expression in giant cells and syncytia induced in Arabidopsis thaliana by Meloidogyne incognita and Heterodera schachtii
inferredcites →https://doi.org/10.1163/15685411-00002875openalex-snapshot
Only a small subset of the SPRY domain gene family in Globodera pallida is likely to encode effectors, two of which suppress host defences induced by the potato resistance gene Gpa2
inferredcites →https://doi.org/10.1163/187529267x00120openalex-snapshot
The Effect of Environment On Sex Determination in Heterodera Rostochiensis
inferredcites →https://doi.org/10.1177/0748730417737695openalex-snapshot
Sumoylation of the Plant Clock Transcription Factor CCA1 Suppresses DNA Binding
inferredcites →https://doi.org/10.1186/1471-2229-13-67openalex-snapshot
Ectopic expression of AtPAD4broadens resistance of soybean to soybean cyst and root-knot nematodes
inferredcites →https://doi.org/10.1371/journal.pgen.1006016openalex-snapshot
An Arabidopsis SUMO E3 Ligase, SIZ1, Negatively Regulates Photomorphogenesis by Promoting COP1 Activity
inferredcites →https://doi.org/10.1371/journal.pgen.1007157openalex-snapshot
The Arabidopsis SUMO E3 ligase SIZ1 mediates the temperature dependent trade-off between plant immunity and growth
inferredcites →https://doi.org/10.1371/journal.pone.0029470openalex-snapshot
Mutation in SUMO E3 ligase, SIZ1, Disrupts the Mature Female Gametophyte in Arabidopsis
inferredcites →https://doi.org/10.1371/journal.pone.0046897openalex-snapshot
MMS21/HPY2 and SIZ1, Two Arabidopsis SUMO E3 Ligases, Have Distinct Functions in Development
inferredcites →https://doi.org/10.1371/journal.pone.0147511openalex-snapshot
Analysis of the Transcriptome of the Infective Stage of the Beet Cyst Nematode, H. schachtii
inferredcites →https://doi.org/10.1371/journal.ppat.1000564openalex-snapshot
The Cyst Nematode SPRYSEC Protein RBP-1 Elicits Gpa2- and RanGAP2-Dependent Plant Cell Death
inferredcites →https://doi.org/10.1371/journal.ppat.1006791openalex-snapshot
“Cyst-ained” research into Heterodera parasitism
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.2210/pdb2yyo/pdbopenalex-snapshot
Crystal structure of human SPRY domain
inferredcites →https://doi.org/10.3389/fpls.2013.00053openalex-snapshot
Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells
inferredcites →https://doi.org/10.3389/fpls.2016.01182openalex-snapshot
COP1 Controls Abiotic Stress Responses by Modulating AtSIZ1 Function through Its E3 Ubiquitin Ligase Activity
inferredcites →https://doi.org/10.3389/fpls.2016.01575openalex-snapshot
SPRYSEC Effectors: A Versatile Protein-Binding Platform to Disrupt Plant Innate Immunity
inferredcites →https://doi.org/10.3390/plants4030606openalex-snapshot
The Control of Auxin Transport in Parasitic and Symbiotic Root–Microbe Interactions
inferredcites →https://doi.org/10.3835/plantgenome2013.12.0042openalex-snapshot
Spud DB: A Resource for Mining Sequences, Genotypes, and Phenotypes to Accelerate Potato Breeding
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1101/2020.06.18.159178openalex-snapshot
Virulence strategies of an insect herbivore and oomycete plant pathogen converge on a host E3 SUMO ligase
inferred← citeshttps://doi.org/10.1111/nph.18184openalex-snapshot
Virulence strategies of an insect herbivore and oomycete plant pathogen converge on host E3 SUMO ligase SIZ1
inferred← citeshttps://doi.org/10.18174/570512openalex-snapshot
Dissecting Gpa2-mediated immune signaling pathways involved in resistance to the potato cyst nematode Globodera pallida
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