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Metabolically-active obligate aerobes in anoxic (sulfidic) marine sediments
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Kinetics of lactic acid fermentation on glucose and corn by Lactobacillus amylophilus
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Eastward shift and maintenance of Arabian Sea oxygen minimum zone: Understanding the paradox
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Sedimentary oxygen consumption and microdistribution at sites across the Arabian Sea oxygen minimum zone (Pakistan margin)
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Dissimilatory perchlorate reduction: A review
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Radiocarbon calibration curve spanning 0 to 50,000 years BP based on paired 230Th/234U/238U and 14C dates on pristine corals
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Dimethyl sulfoxide (DMSO) reduction potential in Mediterranean seagrass (Posidonia oceanica) sediments
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mRNA degradation in bacteria
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Discussion Reporting of 14 C Data
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Optimality theory in evolutionary biology
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Nitrite oxidation in the Namibian oxygen minimum zone
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Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses
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Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment
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Gene expression in the deep biosphere
inferredcites →https://doi.org/10.1038/ncomms14847openalex-snapshot
Remineralization of particulate organic carbon in an ocean oxygen minimum zone
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nrmicro2778openalex-snapshot
Microbial ecology of expanding oxygen minimum zones
inferredcites →https://doi.org/10.1038/nrmicro926openalex-snapshot
Microbial perchlorate reduction: rocket-fuelled metabolism
inferredcites →https://doi.org/10.1038/s41579-018-0087-zopenalex-snapshot
Microbial niches in marine oxygen minimum zones
inferredcites →https://doi.org/10.1038/s41598-018-27002-2openalex-snapshot
Enhanced carbon-sulfur cycling in the sediments of Arabian Sea oxygen minimum zone center
inferredcites →https://doi.org/10.1038/srep12179openalex-snapshot
Resilience and receptivity worked in tandem to sustain a geothermal mat community amidst erratic environmental conditions
inferredcites →https://doi.org/10.1073/pnas.0706787104openalex-snapshot
Ancient bacteria show evidence of DNA repair
inferredcites →https://doi.org/10.1073/pnas.0812444106openalex-snapshot
Revising the nitrogen cycle in the Peruvian oxygen minimum zone
inferredcites →https://doi.org/10.1073/pnas.1013435107openalex-snapshot
Aerobic growth at nanomolar oxygen concentrations
inferredcites →https://doi.org/10.1073/pnas.1205009109openalex-snapshot
Microbial oceanography of anoxic oxygen minimum zones
inferredcites →https://doi.org/10.1073/pnas.1317834111openalex-snapshot
Trimethylamine N -oxide metabolism by abundant marine heterotrophic bacteria
inferredcites →https://doi.org/10.1073/pnas.1619844114openalex-snapshot
Cryptic oxygen cycling in anoxic marine zones
inferredcites →https://doi.org/10.1089/cmb.2013.0084openalex-snapshot
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/bioinformatics/btv383openalex-snapshot
Bandage: interactive visualization of de novo genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btv697openalex-snapshot
MetaQUAST: evaluation of metagenome assemblies
inferredcites →https://doi.org/10.1093/nar/gkq275openalex-snapshot
Ab initio gene identification in metagenomic sequences
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkv1070openalex-snapshot
KEGG as a reference resource for gene and protein annotation
inferredcites →https://doi.org/10.1099/00207713-35-2-131openalex-snapshot
Methylophaga marina gen. nov., sp. nov. and Methylophaga thalassica sp. nov., Marine Methylotrophs
inferredcites →https://doi.org/10.1099/ijs.0.63967-0openalex-snapshot
Mesorhizobium thiogangeticum sp. nov., a novel sulfur-oxidizing chemolithoautotroph from rhizosphere soil of an Indian tropical leguminous plant
inferredcites →https://doi.org/10.1111/1462-2920.14737openalex-snapshot
Highly variable mRNA half‐life time within marine bacterial taxa and functional genes
inferredcites →https://doi.org/10.1111/j.1574-6968.1981.tb07669.xopenalex-snapshot
Heterolactic fermentation of intracellular polyglucose by the obligate chemolithotrophThiobacillus neapolitanusunder anaerobic conditions
inferredcites →https://doi.org/10.1111/j.1574-6968.1990.tb03772.xopenalex-snapshot
Anaerobic growth of halophilic archaeobacteria by reduction of dimethysulfoxide and trimethylamineN-oxide
inferredcites →https://doi.org/10.1126/sciadv.1601897openalex-snapshot
Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea)
inferredcites →https://doi.org/10.1126/science.1196889openalex-snapshot
A Cryptic Sulfur Cycle in Oxygen-Minimum–Zone Waters off the Chilean Coast
inferredcites →https://doi.org/10.1126/science.240.4857.1319openalex-snapshot
Bacterial Manganese Reduction and Growth with Manganese Oxide as the Sole Electron Acceptor
inferredcites →https://doi.org/10.1128/aem.00756-13openalex-snapshot
Oxygen Consumption Rates of Bacteria under Nutrient-Limited Conditions
inferredcites →https://doi.org/10.1128/aem.00956-13openalex-snapshot
Kinetic Enrichment of 34 S during Proteobacterial Thiosulfate Oxidation and the Conserved Role of SoxB in S-S Bond Breaking
inferredcites →https://doi.org/10.1128/aem.01743-07openalex-snapshot
(Per)chlorate Reduction by the Thermophilic BacteriumMoorella perchloratireducenssp. nov., Isolated from Underground Gas Storage
inferredcites →https://doi.org/10.1128/aem.03606-14openalex-snapshot
Phenotypic and Genotypic Description of Sedimenticola selenatireducens Strain CUZ, a Marine (Per)Chlorate-Respiring Gammaproteobacterium, and Its Close Relative the Chlorate-Respiring Sedimenticola Strain NSS
inferredcites →https://doi.org/10.1128/aem.51.4.683-689.1986openalex-snapshot
Organic Matter Mineralization with Reduction of Ferric Iron in Anaerobic Sediments
inferredcites →https://doi.org/10.1128/aem.64.11.4507-4512.1998openalex-snapshot
Humic Acid Reduction by Propionibacterium freudenreichii and Other Fermenting Bacteria
inferredcites →https://doi.org/10.1128/aem.64.12.4846-4856.1998openalex-snapshot
Enumeration and Detection of Anaerobic Ferrous Iron-Oxidizing, Nitrate-Reducing Bacteria from Diverse European Sediments
inferredcites →https://doi.org/10.1128/aem.65.7.2969-2976.1999openalex-snapshot
Isolation and Characterization of a Sulfate-Reducing Bacterium That Anaerobically Degrades Alkanes
inferredcites →https://doi.org/10.1128/genomea.01617-15openalex-snapshot
Draft Genome Sequence of Marinobacter sp. Strain P4B1, an Electrogenic Perchlorate-Reducing Strain Isolated from a Long-Term Mixed Enrichment Culture of Marine Bacteria
inferredcites →https://doi.org/10.1128/jb.00559-07openalex-snapshot
Global Analysis of mRNA Decay in Halobacterium salinarum NRC-1 at Single-Gene Resolution Using DNA Microarrays
inferredcites →https://doi.org/10.1128/mbio.00217-13openalex-snapshot
Physiological and Genetic Description of Dissimilatory Perchlorate Reduction by the Novel Marine Bacterium Arcobacter sp. Strain CAB
inferredcites →https://doi.org/10.1128/msphere.00436-18openalex-snapshot
Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/gb-2010-11-5-r54openalex-snapshot
Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus
inferredcites →https://doi.org/10.1186/gb-2010-11-s1-p2openalex-snapshot
The elastic analysis with galaxy on the cloud
inferredcites →https://doi.org/10.1186/s12864-015-2197-6openalex-snapshot
Dormant non-culturable Mycobacterium tuberculosis retains stable low-abundant mRNA
inferredcites →https://doi.org/10.1186/s40168-015-0146-xopenalex-snapshot
Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
inferredcites →https://doi.org/10.1371/journal.pone.0056335openalex-snapshot
Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces
inferredcites →https://doi.org/10.1371/journal.pone.0133526openalex-snapshot
Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones
inferredcites →https://doi.org/10.2307/1550230openalex-snapshot
Radiocarbon Variations and Absolute Chronology
inferredcites →https://doi.org/10.3389/fmicb.2015.01492openalex-snapshot
Nitrate Storage and Dissimilatory Nitrate Reduction by Eukaryotic Microbes
inferredcites →https://doi.org/10.3389/fmicb.2017.00031openalex-snapshot
Drivers of Bacterial Maintenance and Minimal Energy Requirements
inferredcites →https://doi.org/10.3389/fmicb.2017.01020openalex-snapshot
Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach
inferredcites →https://doi.org/10.4319/lom.2009.7.371openalex-snapshot
Determination of ultra‐low oxygen concentrations in oxygen minimum zones by the STOX sensor
inferredcites →https://doi.org/10.5194/bg-13-283-2016openalex-snapshot
Microbial methanogenesis in the sulfate-reducing zone of surface sediments traversing the Peruvian margin
inferredcites →https://doi.org/10.7717/peerj.1593openalex-snapshot
Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/9781119554356.ch6openalex-snapshot
Deep Subsurface Microbiomes of the Marine Realm
inferred← citeshttps://doi.org/10.1007/s00203-024-03875-yopenalex-snapshot
Extremely oligotrophic and complex-carbon-degrading microaerobic bacteria from Arabian Sea oxygen minimum zone sediments
inferred← citeshttps://doi.org/10.5194/bg-17-4611-2020openalex-snapshot
Cryptic roles of tetrathionate in the sulfur cycle of marine sediments: microbial drivers and indicators
inferred← citeshttps://doi.org/10.5194/bg-18-5203-2021openalex-snapshot
Sedimentation rate and organic matter dynamics shape microbiomes across a continental margin
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