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Absence of pathogenic Short Tandem Repeat expansions in Systemic Lupus Erythematosus disease-associated genes

https://doi.org/10.1101/729467
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/art.25032openalex-snapshot
Expansion of circulating T cells resembling follicular helper T cells is a fixed phenotype that identifies a subset of severe systemic lupus erythematosus
inferredcites →https://doi.org/10.1007/s11926-017-0695-zopenalex-snapshot
Updates in Lupus Genetics
inferredcites →https://doi.org/10.1016/j.ajhg.2017.09.013openalex-snapshot
Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes
inferredcites →https://doi.org/10.1016/j.ajhg.2018.10.015openalex-snapshot
Detecting Expansions of Tandem Repeats in Cohorts Sequenced with Short-Read Sequencing Data
inferredcites →https://doi.org/10.1016/j.neuron.2011.09.011openalex-snapshot
Expanded GGGGCC Hexanucleotide Repeat in Noncoding Region of C9ORF72 Causes Chromosome 9p-Linked FTD and ALS
inferredcites →https://doi.org/10.1016/j.tins.2008.03.006openalex-snapshot
Simple sequence repeats: genetic modulators of brain function and behavior
inferredcites →https://doi.org/10.1038/ng.3461openalex-snapshot
Abundant contribution of short tandem repeats to gene expression variation in humans
inferredcites →https://doi.org/10.1038/ng.766openalex-snapshot
Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus
inferredcites →https://doi.org/10.1038/nmeth.4267openalex-snapshot
Genome-wide profiling of heritable and de novo STR variations
inferredcites →https://doi.org/10.1038/nrg.2017.115openalex-snapshot
Tandem repeats mediating genetic plasticity in health and disease
inferredcites →https://doi.org/10.1038/s41431-018-0279-zopenalex-snapshot
The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design
inferredcites →https://doi.org/10.1038/s41467-019-10242-9openalex-snapshot
Functional rare and low frequency variants in BLK and BANK1 contribute to human lupus
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu168openalex-snapshot
VariantAnnotation : a Bioconductor package for exploration and annotation of genetic variants
inferredcites →https://doi.org/10.1101/gr.177774.114openalex-snapshot
The landscape of human STR variation
inferredcites →https://doi.org/10.1101/gr.225672.117openalex-snapshot
Detection of long repeat expansions from PCR-free whole-genome sequence data
inferredcites →https://doi.org/10.1136/jcp.56.7.481openalex-snapshot
Pathogenesis of systemic lupus erythematosus
inferredcites →https://doi.org/10.1186/ar3189openalex-snapshot
A GA microsatellite in the Fli1promoter modulates gene expression and is associated with systemic lupus erythematosus patients without nephritis
inferredcites →https://doi.org/10.1186/s12864-019-5863-2openalex-snapshot
Recurrent miscalling of missense variation from short-read genome sequence data
inferredcites →https://doi.org/10.1186/s13059-018-1505-2openalex-snapshot
STRetch: detecting and discovering pathogenic short tandem repeat expansions
inferredcites →https://doi.org/10.12688/f1000research.13980.1openalex-snapshot
Recent advances in the detection of repeat expansions with short-read next-generation sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1003336openalex-snapshot
MicroRNA-3148 Modulates Allelic Expression of Toll-Like Receptor 7 Variant Associated with Systemic Lupus Erythematosus
inferredcites →https://doi.org/10.1371/journal.pone.0143199openalex-snapshot
Reliably Detecting Clinically Important Variants Requires Both Combined Variant Calls and Optimized Filtering Strategies
inferredcites →https://doi.org/10.1371/journal.pone.0191962openalex-snapshot
Semaphorin3A induces nerve regeneration in the adult cornea-a switch from its repulsive role in development
inferredcites →https://doi.org/10.1371/journal.pone.0198549openalex-snapshot
HLA Class III: A susceptibility region to systemic lupus erythematosus in Tunisian population
inferredcites →https://doi.org/10.3389/fimmu.2019.00258openalex-snapshot
Exploring Impact of Rare Variation in Systemic Lupus Erythematosus by a Genome Wide Imputation Approach
inferredcites →https://doi.org/10.4172/2155-9899.1000233openalex-snapshot
TNFRSF13B Variants in SLE and Immunodeficiency
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