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High-throughput multicolor 3D localization in live cells by depth-encoding imaging flow cytometry

https://doi.org/10.1101/730101
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Targeting Chromatin Disruption: Transcription Regulators that Acetylate Histones
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Precise Three-Dimensional Scan-Free Multiple-Particle Tracking over Large Axial Ranges with Tetrapod Point Spread Functions
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Extending Single-Molecule Microscopy Using Optical Fourier Processing
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Deep learning massively accelerates super-resolution localization microscopy
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Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples
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Fiji: an open-source platform for biological-image analysis
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Fast multicolor 3D imaging using aberration-corrected multifocus microscopy
inferredcites →https://doi.org/10.1038/nphoton.2014.13openalex-snapshot
Isotropic three-dimensional super-resolution imaging with a self-bending point spread function
inferredcites →https://doi.org/10.1038/nphoton.2016.137openalex-snapshot
Multicolour localization microscopy by point-spread-function engineering
inferredcites →https://doi.org/10.1038/nprot.2014.079openalex-snapshot
DNA origami–based standards for quantitative fluorescence microscopy
inferredcites →https://doi.org/10.1038/s41467-019-10628-9openalex-snapshot
Chromosome dynamics near the sol-gel phase transition dictate the timing of remote genomic interactions
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A bisected pupil for studying single-molecule orientational dynamics and its application to three-dimensional super-resolution microscopy
inferredcites →https://doi.org/10.1063/1.4896260openalex-snapshot
High resolution light-sheet based high-throughput imaging cytometry system enables visualization of intra-cellular organelles
inferredcites →https://doi.org/10.1073/pnas.0813131106openalex-snapshot
Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure
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Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function
inferredcites →https://doi.org/10.1073/pnas.1216687109openalex-snapshot
Simultaneous, accurate measurement of the 3D position and orientation of single molecules
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Regulation of the galactose pathway in Saccharomyces cerevisiae : Induction of uridyl transferase mRNA and dependency on GAL4 gene function
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Metadata matters: access to image data in the real world
inferredcites →https://doi.org/10.1083/jcb.201507069openalex-snapshot
Global reorganization of budding yeast chromosome conformation in different physiological conditions
inferredcites →https://doi.org/10.1091/mbc.e17-11-0648openalex-snapshot
Quantitative imaging of chromatin decompaction in living cells
inferredcites →https://doi.org/10.1093/bioinformatics/btu202openalex-snapshot
ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging
inferredcites →https://doi.org/10.1093/clinchem/46.8.1221openalex-snapshot
Flow Cytometry: Principles and Clinical Applications in Hematology
inferredcites →https://doi.org/10.1101/267096openalex-snapshot
DeepLoco: Fast 3D Localization Microscopy Using Neural Networks
inferredcites →https://doi.org/10.1103/physrevlett.113.133902openalex-snapshot
Optimal Point Spread Function Design for 3D Imaging
inferredcites →https://doi.org/10.1111/j.1538-7836.2011.04283.xopenalex-snapshot
A new microparticle size calibration standard for use in measuring smaller microparticles using a new flow cytometer
inferredcites →https://doi.org/10.1126/science.1153529openalex-snapshot
Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy
inferredcites →https://doi.org/10.1146/annurev.biophys.36.040306.132700openalex-snapshot
New Fluorescent Tools for Watching Nanometer-Scale Conformational Changes of Single Molecules
inferredcites →https://doi.org/10.1177/24.1.768371openalex-snapshot
Laser stroboscopic photography. Technique for cell orientation studies in flow.
inferredcites →https://doi.org/10.1177/27.1.374595openalex-snapshot
A multidimensional slit-scan flow system.
inferredcites →https://doi.org/10.1177/27.1.374597openalex-snapshot
Imaging in flow.
inferredcites →https://doi.org/10.1364/ao.34.001859openalex-snapshot
Extended depth of field through wave-front coding
inferredcites →https://doi.org/10.1364/boe.8.005735openalex-snapshot
Observation of live chromatin dynamics in cells via 3D localization microscopy using Tetrapod point spread functions
inferredcites →https://doi.org/10.1364/oe.17.008264openalex-snapshot
Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy
inferredcites →https://doi.org/10.1364/oe.24.004996openalex-snapshot
Simultaneous measurement of emission color and 3D position of single molecules
inferredcites →https://doi.org/10.1364/ol.37.000707openalex-snapshot
Phase imaging flow cytometry using a focus-stack collecting microscope
inferredcites →https://doi.org/10.1364/ol.38.001521openalex-snapshot
Single-molecule orientation measurements with a quadrated pupil
inferredcites →https://doi.org/10.1364/ol.43.000174openalex-snapshot
Aberration-accounting calibration for 3D single-molecule localization microscopy
inferredcites →https://doi.org/10.1364/optica.5.000458openalex-snapshot
Deep-STORM: super-resolution single-molecule microscopy by deep learning
inferredcites →https://doi.org/10.1385/1-59259-210-4:009openalex-snapshot
Growth and Maintenance of Yeast
inferredcites →https://doi.org/10.1385/1-59259-210-4:015openalex-snapshot
Media Formulations for Various Two-Hybrid Systems
inferredcites →https://doi.org/10.1532/lh96.04121openalex-snapshot
Impact of the New Beckman Coulter Cytomics FC 500 5-Color Flow Cytometer on a Regional Flow Cytometry Clinical Laboratory Service
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Use of Flow Cytometry in Clinical Practice
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