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Expression profiling of the mature C. elegans nervous system by single-cell RNA-Sequencing

https://doi.org/10.1101/737577
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2019.05.031openalex-snapshot
Comprehensive Integration of Single-Cell Data
inferredcites →https://doi.org/10.1016/j.cell.2020.12.012openalex-snapshot
NeuroPAL: A Multicolor Atlas for Whole-Brain Neuronal Identification in C. elegans
inferredcites →https://doi.org/10.1016/j.cub.2016.10.027openalex-snapshot
Revisiting Neuronal Cell Type Classification in Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.neuron.2015.07.031openalex-snapshot
Regulatory Logic of Pan-Neuronal Gene Expression in C. elegans
inferredcites →https://doi.org/10.1016/j.neuron.2018.07.042openalex-snapshot
The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System
inferredcites →https://doi.org/10.1016/s0092-8674(00)81525-1openalex-snapshot
Lateral Signaling Mediated by Axon Contact and Calcium Entry Regulates Asymmetric Odorant Receptor Expression in C. elegans
inferredcites →https://doi.org/10.1038/35070575openalex-snapshot
The homeobox gene lim-6 is required for distinct chemosensory representations in C. elegans
inferredcites →https://doi.org/10.1038/nature21362openalex-snapshot
C. elegans neurons jettison protein aggregates and mitochondria under neurotoxic stress
inferredcites →https://doi.org/10.1038/nbt.2859openalex-snapshot
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
inferredcites →https://doi.org/10.1038/nbt.4314openalex-snapshot
Dimensionality reduction for visualizing single-cell data using UMAP
inferredcites →https://doi.org/10.1038/ncomms14049openalex-snapshot
Massively parallel digital transcriptional profiling of single cells
inferredcites →https://doi.org/10.1038/nmeth.4150openalex-snapshot
Single-cell mRNA quantification and differential analysis with Census
inferredcites →https://doi.org/10.1038/nmeth.4402openalex-snapshot
Reversed graph embedding resolves complex single-cell trajectories
inferredcites →https://doi.org/10.1038/nn.4216openalex-snapshot
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
inferredcites →https://doi.org/10.1038/nn.4366openalex-snapshot
Disentangling neural cell diversity using single-cell transcriptomics
inferredcites →https://doi.org/10.1073/pnas.0505530102openalex-snapshot
MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision
inferredcites →https://doi.org/10.1073/pnas.94.7.3384openalex-snapshot
Guanylyl cyclase expression in specific sensory neurons: A new family of chemosensory receptors
inferredcites →https://doi.org/10.1088/1742-5468/2008/10/p10008openalex-snapshot
Fast unfolding of communities in large networks
inferredcites →https://doi.org/10.1093/bioinformatics/btw777openalex-snapshot
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
inferredcites →https://doi.org/10.1093/gigascience/giaa151openalex-snapshot
SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data
inferredcites →https://doi.org/10.1093/nar/22.9.1762openalex-snapshot
pha-1, a selectable marker for gene transfer inC.elegans
inferredcites →https://doi.org/10.1098/rstb.1976.0085openalex-snapshot
The pharynx of Caenorhabditis elegans
inferredcites →https://doi.org/10.1098/rstb.1986.0056openalex-snapshot
The structure of the nervous system of the nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1101/gad.1763509openalex-snapshot
Transcriptional regulation and stabilization of left–right neuronal identity in C. elegans
inferredcites →https://doi.org/10.1111/joa.12931openalex-snapshot
Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing
inferredcites →https://doi.org/10.1126/science.aaa1934openalex-snapshot
Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
inferredcites →https://doi.org/10.1126/science.aam8940openalex-snapshot
Comprehensive single-cell transcriptional profiling of a multicellular organism
inferredcites →https://doi.org/10.1126/science.aat8077openalex-snapshot
Spatiotemporal transcriptomic divergence across human and macaque brain development
inferredcites →https://doi.org/10.1126/science.aax1971openalex-snapshot
A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
inferredcites →https://doi.org/10.1186/s12861-015-0076-7openalex-snapshot
Morphologically defined sub-stages of C. elegans vulval development in the fourth larval stage
inferredcites →https://doi.org/10.1186/s13059-019-1662-yopenalex-snapshot
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
inferredcites →https://doi.org/10.1371/journal.pbio.2004218openalex-snapshot
An atlas of Caenorhabditis elegans chemoreceptor expression
inferredcites →https://doi.org/10.1371/journal.pone.0019505openalex-snapshot
Isolation and Culture of Larval Cells from C. elegans
inferredcites →https://doi.org/10.1371/journal.pone.0112102openalex-snapshot
Isolation of Specific Neurons from C. elegans Larvae for Gene Expression Profiling
inferredcites →https://doi.org/10.21105/joss.00861openalex-snapshot
UMAP: Uniform Manifold Approximation and Projection
inferredcites →https://doi.org/10.2144/02324bm01openalex-snapshot
PCR Fusion-Based Approach to Create Reporter Gene Constructs for Expression Analysis in Transgenic C. elegans
inferredcites →https://doi.org/10.48550/arxiv.1802.03426openalex-snapshot
UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-031-07793-7_2openalex-snapshot
Neurogenetic Analysis in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2021.03.004openalex-snapshot
On the origins and conceptual frameworks of natural plasticity—Lessons from single-cell models in C. elegans
inferred← citeshttps://doi.org/10.1016/j.conb.2021.02.009openalex-snapshot
Wired for insight—recent advances in Caenorhabditis elegans neural circuits
inferred← citeshttps://doi.org/10.1016/j.cub.2020.10.076openalex-snapshot
Innate Immunity Promotes Sleep through Epidermal Antimicrobial Peptides
inferred← citeshttps://doi.org/10.1016/j.expneurol.2021.113648openalex-snapshot
Maintenance of protein homeostasis in glia extends lifespan in C. elegans
inferred← citeshttps://doi.org/10.1016/j.jbc.2021.101094openalex-snapshot
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
inferred← citeshttps://doi.org/10.1016/j.neuroimage.2021.118570openalex-snapshot
Where the genome meets the connectome: Understanding how genes shape human brain connectivity
inferred← citeshttps://doi.org/10.1038/s41598-020-66536-2openalex-snapshot
RPamide neuropeptides NLP-22 and NLP-2 act through GnRH-like receptors to promote sleep and wakefulness in C. elegans
inferred← citeshttps://doi.org/10.1038/s42003-021-02547-7openalex-snapshot
Distinct neuropeptide-receptor modules regulate a sex-specific behavioral response to a pheromone
inferred← citeshttps://doi.org/10.1080/01677063.2020.1802725openalex-snapshot
Synaptic remodeling, lessons from C. elegans
inferred← citeshttps://doi.org/10.1080/01677063.2020.1830084openalex-snapshot
Orcokinin neuropeptides regulate sleep in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1093/nar/gkaa486openalex-snapshot
Combining single-cell RNA-sequencing with a molecular atlas unveils new markers for Caenorhabditis elegans neuron classes
inferred← citeshttps://doi.org/10.1101/2019.12.20.882514openalex-snapshot
A neuronal thermostat controls membrane fluidity in C. elegans
inferred← citeshttps://doi.org/10.1101/2020.06.02.129825openalex-snapshot
An Hourglass Circuit Motif Transforms a Motor Program via Subcellularly Localized Muscle Calcium Signaling and Contraction
inferred← citeshttps://doi.org/10.1101/2020.08.11.246942openalex-snapshot
The sex-specific VC neurons are mechanically activated motor neurons that facilitate serotonin-induced egg laying in C. elegans
inferred← citeshttps://doi.org/10.1101/2020.09.05.283267openalex-snapshot
rab-27 acts in an intestinal secretory pathway to inhibit axon regeneration in C. elegans
inferred← citeshttps://doi.org/10.1101/2020.10.06.328880openalex-snapshot
Temporal transitions in post-mitotic neurons throughout the C. elegans nervous system
inferred← citeshttps://doi.org/10.1101/2021.01.04.425342openalex-snapshot
An optimized ribodepletion approach for C. elegans RNA-sequencing libraries
inferred← citeshttps://doi.org/10.1101/2024.01.05.574402openalex-snapshot
Behavioral screening of conserved RNA-binding proteins reveals CEY-1/YBX RNA-binding protein dysfunction leads to impairments in memory and cognition
inferred← citeshttps://doi.org/10.1101/2024.03.06.583750openalex-snapshot
A single cell RNA sequence atlas of the early Drosophila larval eye
inferred← citeshttps://doi.org/10.1101/689851openalex-snapshot
A novel metric reveals previously unrecognized distortion in the analysis of scRNA-seq data
inferred← citeshttps://doi.org/10.1101/gr.271791.120openalex-snapshot
Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes
inferred← citeshttps://doi.org/10.1111/jne.12911openalex-snapshot
Neuromodulatory pathways in learning and memory: Lessons from invertebrates
inferred← citeshttps://doi.org/10.1186/s12864-024-10423-xopenalex-snapshot
A single cell RNA sequence atlas of the early Drosophila larval eye
inferred← citeshttps://doi.org/10.1186/s12915-020-0745-2openalex-snapshot
Neuron ID dataset facilitates neuronal annotation for whole-brain activity imaging of C. elegans
inferred← citeshttps://doi.org/10.1186/s12915-021-01119-9openalex-snapshot
Caenorhabditis elegans exhibits positive gravitaxis
inferred← citeshttps://doi.org/10.1186/s13229-020-00370-1openalex-snapshot
Autism spectrum disorder at the crossroad between genes and environment: contributions, convergences, and interactions in ASD developmental pathophysiology
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000361openalex-snapshot
A wake-active locomotion circuit depolarizes a sleep-active neuron to switch on sleep
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007974openalex-snapshot
Synaptic polarity and sign-balance prediction using gene expression data in the Caenorhabditis elegans chemical synapse neuronal connectome network
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009877openalex-snapshot
rab-27 acts in an intestinal pathway to inhibit axon regeneration in C. elegans
inferred← citeshttps://doi.org/10.1523/jneurosci.1357-20.2020openalex-snapshot
Cellular Expression and Functional Roles of All 26 Neurotransmitter GPCRs in the C. elegans Egg-Laying Circuit
inferred← citeshttps://doi.org/10.1523/jneurosci.2150-20.2021openalex-snapshot
The Sex-Specific VC Neurons Are Mechanically Activated Motor Neurons That Facilitate Serotonin-Induced Egg Laying in C. elegans
inferred← citeshttps://doi.org/10.1523/jneurosci.2674-19.2020openalex-snapshot
NPY/NPF-Related Neuropeptide FLP-34 Signals from Serotonergic Neurons to Modulate Aversive Olfactory Learning in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1534/g3.119.400654openalex-snapshot
Activity-Dependent Regulation of the Proapoptotic BH3-Only Gene egl-1 in a Living Neuron Pair in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.21248/gups.73497openalex-snapshot
Neuropeptidergic regulation of locomotion inhibition in C. elegans
inferred← citeshttps://doi.org/10.3390/genes16030260openalex-snapshot
An Extensive Gap Junction Neural Network Modulates Caenorhabditis elegans Aversive Behavior
inferred← citeshttps://doi.org/10.3390/ph13080164openalex-snapshot
Phenotypic Screening in C. elegans as a Tool for the Discovery of New Geroprotective Drugs
inferred← citeshttps://doi.org/10.7554/elife.47918openalex-snapshot
C. elegans neurons have functional dendritic spines
inferred← citeshttps://doi.org/10.7554/elife.59341openalex-snapshot
An hourglass circuit motif transforms a motor program via subcellularly localized muscle calcium signaling and contraction
inferred← citeshttps://doi.org/10.7554/elife.59464openalex-snapshot
Establishment and maintenance of motor neuron identity via temporal modularity in terminal selector function
inferred← citeshttps://doi.org/10.7554/elife.64906openalex-snapshot
In silico analysis of the transcriptional regulatory logic of neuronal identity specification throughout the C. elegans nervous system
inferred← citeshttps://doi.org/10.7554/elife.65857openalex-snapshot
Whole-organism eQTL mapping at cellular resolution with single-cell sequencing
inferred← citeshttps://doi.org/10.7554/elife.67723openalex-snapshot
Behavioral control by depolarized and hyperpolarized states of an integrating neuron
inferred← citeshttps://doi.org/10.7554/elife.68848openalex-snapshot
Corollary discharge promotes a sustained motor state in a neural circuit for navigation
inferred← citeshttps://doi.org/10.7554/elife.74557openalex-snapshot
The transcriptional corepressor CTBP-1 acts with the SOX family transcription factor EGL-13 to maintain AIA interneuron cell identity in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.7554/elife.78941openalex-snapshot
Neuronal temperature perception induces specific defenses that enable C. elegans to cope with the enhanced reactivity of hydrogen peroxide at high temperature
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