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Analysing complex metagenomic data with MicroWineBar

https://doi.org/10.1101/742684
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/s0168-1605(03)00246-0openalex-snapshot
Spoilage yeasts in the wine industry
inferredcites →https://doi.org/10.1038/nature06244openalex-snapshot
The Human Microbiome Project
inferredcites →https://doi.org/10.1038/nmeth.2066openalex-snapshot
Metagenomic microbial community profiling using unique clade-specific marker genes
inferredcites →https://doi.org/10.1038/nmeth.4458openalex-snapshot
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
inferredcites →https://doi.org/10.1080/01621459.1984.10478080openalex-snapshot
Graphical Perception: Theory, Experimentation, and Application to the Development of Graphical Methods
inferredcites →https://doi.org/10.1093/bioinformatics/btp341openalex-snapshot
Visual and statistical comparison of metagenomes
inferredcites →https://doi.org/10.1101/gr.5969107openalex-snapshot
MEGAN analysis of metagenomic data
inferredcites →https://doi.org/10.1109/mcse.2007.55openalex-snapshot
Matplotlib: A 2D Graphics Environment
inferredcites →https://doi.org/10.1109/vl.1996.545307openalex-snapshot
The eyes have it: a task by data type taxonomy for information visualizations
inferredcites →https://doi.org/10.1126/scienceopenalex-snapshot
Science
inferredcites →https://doi.org/10.1126/science.1093857openalex-snapshot
Environmental Genome Shotgun Sequencing of the Sargasso Sea
inferredcites →https://doi.org/10.1126/science.1109070openalex-snapshot
Community Proteomics of a Natural Microbial Biofilm
inferredcites →https://doi.org/10.1126/science.1140516openalex-snapshot
Signals from chloroplasts converge to regulate nuclear gene expression.
inferredcites →https://doi.org/10.1186/1471-2105-12-385openalex-snapshot
Interactive metagenomic visualization in a Web browser
inferredcites →https://doi.org/10.1186/gb-2014-15-1-r1openalex-snapshot
Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1186/s12859-019-2629-4openalex-snapshot
Keanu: a novel visualization tool to explore biodiversity in metagenomes
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s40168-018-0451-2openalex-snapshot
Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
inferredcites →https://doi.org/10.1371/journal.pcbi.0010024openalex-snapshot
Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities
inferredcites →https://doi.org/10.1371/journal.pcbi.1004721openalex-snapshot
Investigating the Consequences of Interference between Multiple CD8+ T Cell Escape Mutations in Early HIV Infection
inferredcites →https://doi.org/10.1371/journal.pcbi.1004957openalex-snapshot
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pone.0176469openalex-snapshot
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads
inferredcites →https://doi.org/10.1371/journal.pone.0179159openalex-snapshot
Polyamine transporter potABCD is required for virulence of encapsulated but not nonencapsulated Streptococcus pneumoniae
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.15252/msb.20145645openalex-snapshot
Potential of fecal microbiota for early‐stage detection of colorectal cancer
inferredcites →https://doi.org/10.21775/cimb.024.037openalex-snapshot
Methods for The Metagenomic Data Visualization and Analysis
inferredcites →https://doi.org/10.25080/majora-92bf1922-00aopenalex-snapshot
Data Structures for Statistical Computing in Python
inferredcites →https://doi.org/10.3389/fmicb.2016.00338openalex-snapshot
Comparison of Fermentation and Wines Produced by Inoculation of Hanseniaspora vineae and Saccharomyces cerevisiae
inferredcites →https://doi.org/10.3389/fmicb.2016.00411openalex-snapshot
Past and Future of Non-Saccharomyces Yeasts: From Spoilage Microorganisms to Biotechnological Tools for Improving Wine Aroma Complexity
inferredcites →https://doi.org/10.3389/fmicb.2016.01234openalex-snapshot
Bacterial Communities: Interactions to Scale
inferredcites →https://doi.org/10.3389/fmicb.2017.01020openalex-snapshot
Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach
inferredcites →https://doi.org/10.3389/fmicb.2017.02224openalex-snapshot
Microbiome Datasets Are Compositional: And This Is Not Optional
inferredcites →https://doi.org/10.3389/fmicb.2019.01347openalex-snapshot
Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture
inferredcites →https://doi.org/10.3402/mehd.v26.27663openalex-snapshot
Analysis of composition of microbiomes: a novel method for studying microbial composition
inferredcites →https://doi.org/10.5344/ajev.1991.42.2.141openalex-snapshot
Effect of Climatic Conditions on Yeast Diversity in Grape Musts from Northwest Spain
inferredcites →https://doi.org/10.7717/peerj-cs.104openalex-snapshot
Bracken: estimating species abundance in metagenomics data
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