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Genome sequencing and neurotoxin diversity of a wandering spider Pardosa pseudoannulata (pond wolf spider)
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
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Predicting Secretory Proteins with SignalP
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InterPro and InterProScan
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A comparison of prey lengths among spiders
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Ventricular injection of nerve growth factor increases dopamine content in the striata of MPTP-treated mice
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Structure, composition and mechanical properties of the silk fibres of the egg case of the Joro spider, Nephila clavata (Araneae, Nephilidae)
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Venom Composition and Strategies in Spiders
inferredcites →https://doi.org/10.1016/b978-0-12-816872-1.00010-8openalex-snapshot
Spider silk fibers
inferredcites →https://doi.org/10.1016/j.cbd.2018.09.002openalex-snapshot
Toxin diversity revealed by the venom gland transcriptome of Pardosa pseudoannulata, a natural enemy of several insect pests
inferredcites →https://doi.org/10.1016/j.cub.2018.03.064openalex-snapshot
Phylogenomics, Diversification Dynamics, and Comparative Transcriptomics across the Spider Tree of Life
inferredcites →https://doi.org/10.1016/j.cub.2018.06.018openalex-snapshot
Phylogenomics, Diversification Dynamics, and Comparative Transcriptomics across the Spider Tree of Life
inferredcites →https://doi.org/10.1016/j.ibmb.2010.06.007openalex-snapshot
Gene knockdown by intro-thoracic injection of double-stranded RNA in the brown planthopper, Nilaparvata lugens
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The toxin Tx4(6-1) from the spider Phoneutria nigriventer slows down Na+ current inactivation in insect CNS via binding to receptor site 3
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The cystine knot structure of ion channel toxins and related polypeptides
inferredcites →https://doi.org/10.1021/acs.biomac.8b00602openalex-snapshot
Role of Hygroscopic Low Molecular Mass Compounds in Humidity Responsive Adhesion of Spider’s Capture Silk
inferredcites →https://doi.org/10.1021/bi052105qopenalex-snapshot
Spider Egg Case Core Fibers: Trimeric Complexes Assembled from TuSp1, ECP-1, and ECP-2
inferredcites →https://doi.org/10.1021/bm101002wopenalex-snapshot
Synthetic Spider Silk Fibers Spun from Pyriform Spidroin 2, A Glue Silk Protein Discovered in Orb-Weaving Spider Attachment Discs
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Nephila clavipes Flagelliform Silk-Like GGX Motifs Contribute to Extensibility and Spacer Motifs Contribute to Strength in Synthetic Spider Silk Fibers
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Spider Web Glue: Two Proteins Expressed from Opposite Strands of the Same DNA Sequence
inferredcites →https://doi.org/10.1038/35069000openalex-snapshot
Liquid crystalline spinning of spider silk
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Gene Ontology: tool for the unification of biology
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The sequence and de novo assembly of the giant panda genome
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Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
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Erratum: The sequence and de novo assembly of the giant panda genome
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/ncomms4765openalex-snapshot
Spider genomes provide insight into composition and evolution of venom and silk
inferredcites →https://doi.org/10.1038/ng.2615openalex-snapshot
The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
inferredcites →https://doi.org/10.1038/ng.3852openalex-snapshot
The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression
inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot
jModelTest 2: more models, new heuristics and parallel computing
inferredcites →https://doi.org/10.1038/s41467-018-04263-zopenalex-snapshot
Hygroscopic compounds in spider aggregate glue remove interfacial water to maintain adhesion in humid conditions
inferredcites →https://doi.org/10.1038/s41467-018-05477-xopenalex-snapshot
Directed evolution of CRISPR-Cas9 to increase its specificity
inferredcites →https://doi.org/10.1073/pnas.0502473102openalex-snapshot
Modular evolution of egg case silk genes across orb-weaving spider superfamilies
inferredcites →https://doi.org/10.1073/pnas.0901377106openalex-snapshot
Reconstructing web evolution and spider diversification in the molecular era
inferredcites →https://doi.org/10.1074/jbc.m109.021378openalex-snapshot
Pyriform Spidroin 1, a Novel Member of the Silk Gene Family That Anchors Dragline Silk Fibers in Attachment Discs of the Black Widow Spider, Latrodectus hesperus
inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot
A Rapid Bootstrap Algorithm for the RAxML Web Servers
inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot
Gene prediction with a hidden Markov model and a new intron submodel
inferredcites →https://doi.org/10.1093/bioinformatics/bth315openalex-snapshot
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
inferredcites →https://doi.org/10.1093/bioinformatics/bti1018openalex-snapshot
De novo identification of repeat families in large genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btl097openalex-snapshot
CAFE: a computational tool for the study of gene family evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btp120openalex-snapshot
TopHat: discovering splice junctions with RNA-Seq
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/btv362openalex-snapshot
IBS: an illustrator for the presentation and visualization of biological sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btx661openalex-snapshot
ArachnoServer 3.0: an online resource for automated discovery, analysis and annotation of spider toxins
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/molbev/msv037openalex-snapshot
Tree of Life Reveals Clock-Like Speciation and Diversification
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/28.1.263openalex-snapshot
The Pfam Protein Families Database
inferredcites →https://doi.org/10.1093/nar/28.1.45openalex-snapshot
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot
The Pfam Protein Families Database
inferredcites →https://doi.org/10.1093/nar/gkg770openalex-snapshot
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gki034openalex-snapshot
The ProDom database of protein domain families: more emphasis on 3D
inferredcites →https://doi.org/10.1093/nar/gki418openalex-snapshot
FFAS03: a server for profile-profile sequence alignments
inferredcites →https://doi.org/10.1093/nar/gkm286openalex-snapshot
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
inferredcites →https://doi.org/10.1093/nar/gkr931openalex-snapshot
SMART 7: recent updates to the protein domain annotation resource
inferredcites →https://doi.org/10.1101/gr.10.4.516openalex-snapshot
Ab initio Gene Finding in Drosophila Genomic DNA
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.170720.113openalex-snapshot
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
inferredcites →https://doi.org/10.1101/gr.178319.114openalex-snapshot
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
inferredcites →https://doi.org/10.1126/science.287.5457.1477openalex-snapshot
Molecular Architecture and Evolution of a Modular Spider Silk Protein Gene
inferredcites →https://doi.org/10.1186/1471-2105-15-180openalex-snapshot
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping
inferredcites →https://doi.org/10.1186/1471-2105-7-62openalex-snapshot
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
inferredcites →https://doi.org/10.1186/1471-2148-14-31openalex-snapshot
Intragenic homogenization and multiple copies of prey-wrapping silk genes in Argiope garden spiders
inferredcites →https://doi.org/10.1186/gb-2002-3-7-research0034openalex-snapshot
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
inferredcites →https://doi.org/10.1186/gb-2008-9-1-r7openalex-snapshot
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
inferredcites →https://doi.org/10.1186/s12864-017-3551-7openalex-snapshot
House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity
inferredcites →https://doi.org/10.1186/s12915-017-0399-xopenalex-snapshot
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot
Repbase Update, a database of repetitive elements in eukaryotic genomes
inferredcites →https://doi.org/10.1371/journal.pone.0015633openalex-snapshot
De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits
inferredcites →https://doi.org/10.1371/journal.pone.0047768openalex-snapshot
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
inferredcites →https://doi.org/10.1636/joa-16-s-063.1openalex-snapshot
Dissection of silk glands in the Western black widowLatrodectus hesperus
inferredcites →https://doi.org/10.1636/sh09-20.1openalex-snapshot
Silk gene transcripts in the developing tubuliform glands of the Western black widow, Latrodectus hesperus
inferredcites →https://doi.org/10.3390/genes10020137openalex-snapshot
DNA Methylation Patterns in the Social Spider, Stegodyphus dumicola
inferredcites →https://doi.org/10.3390/md10071605openalex-snapshot
Functional Expression in Escherichia coli of the Disulfide-Rich Sea Anemone Peptide APETx2, a Potent Blocker of Acid-Sensing Ion Channel 3
inferredcites →https://doi.org/10.3791/2382openalex-snapshot
Microdissection of Black Widow Spider Silk-producing Glands
inferredcites →https://doi.org/10.4230/lipics.cpm.2021.16openalex-snapshot
Compressed Weighted de Bruijn Graphs
inferredcites →https://doi.org/10.7717/peerj.6703openalex-snapshot
Spiders did not repeatedly gain, but repeatedly lost, foraging webs
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.cbd.2019.100626openalex-snapshot
Identification, genomic organization and expression pattern of glutathione transferase in Pardosa pseudoannulata
inferred← citeshttps://doi.org/10.1016/j.cbpc.2021.109118openalex-snapshot
Genomic organization and expression pattern of cytochrome P450 genes in the wolf spider Pardosa pseudoannulata
inferred← citeshttps://doi.org/10.1093/gigascience/giaa148openalex-snapshot
Chromosome-level reference genome of the European wasp spider Argiope bruennichi : a resource for studies on range expansion and evolutionary adaptation
inferred← citeshttps://doi.org/10.1093/gigascience/giad002openalex-snapshot
Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
inferred← citeshttps://doi.org/10.1093/icb/icad050openalex-snapshot
The Impact of Whole Genome Duplication on the Evolution of the Arachnids
inferred← citeshttps://doi.org/10.1111/cla.12523openalex-snapshot
A novel probe set for the phylogenomics and evolution of RTA spiders
inferred← citeshttps://doi.org/10.1111/imb.12678openalex-snapshot
Characterization of ecdysteroid biosynthesis in the pond wolf spider, Pardosa pseudoannulata
inferred← citeshttps://doi.org/10.3389/frchs.2022.1082700openalex-snapshot
The seven grand challenges in arachnid science
inferred← citeshttps://doi.org/10.3390/d14030184openalex-snapshot
In Silico Assessment of Probe-Capturing Strategies and Effectiveness in the Spider Sub-Lineage Araneoidea (Order: Araneae)
inferred← citeshttps://doi.org/10.7287/peerj.9534v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Arthropod IGF, relaxin and gonadulin, putative orthologs of Drosophila insulin-like peptides 6, 7 and 8, likely originated from an ancient gene triplication (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.9534v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Arthropod IGF, relaxin and gonadulin, putative orthologs of Drosophila insulin-like peptides 6, 7 and 8, likely originated from an ancient gene triplication (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.9534v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Arthropod IGF, relaxin and gonadulin, putative orthologs of Drosophila insulin-like peptides 6, 7 and 8, likely originated from an ancient gene triplication (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.9534openalex-snapshot
Arthropod IGF, relaxin and gonadulin, putative orthologs of Drosophila insulin-like peptides 6, 7 and 8, likely originated from an ancient gene triplication
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