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The genome of a subterrestrial nematode reveals an evolutionary strategy for adaptation to heat

https://doi.org/10.1101/747584
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0612s35openalex-snapshot
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inferredcites →https://doi.org/10.1007/978-3-642-21878-1_22openalex-snapshot
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Codon Usage Methods for Horizontal Gene Transfer Detection Generate an Abundance of False Positive and False Negative Results
inferredcites →https://doi.org/10.1016/j.bbamcr.2013.06.028openalex-snapshot
ER stress-induced cell death mechanisms
inferredcites →https://doi.org/10.1016/j.cub.2017.08.038openalex-snapshot
Genome Architecture and Evolution of a Unichromosomal Asexual Nematode
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MANF protects dopamine neurons and locomotion defects from a human α-synuclein induced Parkinson's disease model in C. elegans by regulating ER stress and autophagy pathways
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Bax inhibitor-1 from orange spotted grouper, Epinephelus coioides involved in viral infection
inferredcites →https://doi.org/10.1016/j.gca.2015.10.003openalex-snapshot
Variations in microbial carbon sources and cycling in the deep continental subsurface
inferredcites →https://doi.org/10.1016/j.it.2006.12.002openalex-snapshot
The lymphocyte guard-IANs: regulation of lymphocyte survival by IAN/GIMAP family proteins
inferredcites →https://doi.org/10.1016/j.jplph.2007.06.002openalex-snapshot
Computational identification and analysis of immune-associated nucleotide gene family in Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/j.neuron.2004.09.021openalex-snapshot
Mechanosensory Neurite Termination and Tiling Depend on SAX-2 and the SAX-1 Kinase
inferredcites →https://doi.org/10.1016/j.tibs.2014.02.008openalex-snapshot
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inferredcites →https://doi.org/10.1016/j.tig.2013.01.010openalex-snapshot
Worms under stress: C. elegans stress response and its relevance to complex human disease and aging
inferredcites →https://doi.org/10.1016/j.yexcr.2008.05.001openalex-snapshot
Armet, a UPR-upregulated protein, inhibits cell proliferation and ER stress-induced cell death
inferredcites →https://doi.org/10.1016/s0959-437x(02)00348-9openalex-snapshot
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Diploscapter coronataas a facultative parasite of man, with a general review of vertebrate parasitism by rhabditoid worms
inferredcites →https://doi.org/10.1017/s0031182014000791openalex-snapshot
The evolution of parasitism in Nematoda
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inferredcites →https://doi.org/10.1038/ng.3495openalex-snapshot
The genomic basis of parasitism in the Strongyloides clade of nematodes
inferredcites →https://doi.org/10.1038/nprot.2012.016openalex-snapshot
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inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
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inferredcites →https://doi.org/10.1038/nprot.2016.095openalex-snapshot
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
inferredcites →https://doi.org/10.1038/nrg3117openalex-snapshot
Repetitive DNA and next-generation sequencing: computational challenges and solutions
inferredcites →https://doi.org/10.1038/onc.2014.349openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41598-018-28948-zopenalex-snapshot
GOATOOLS: A Python library for Gene Ontology analyses
inferredcites →https://doi.org/10.1038/s41598-019-39699-wopenalex-snapshot
New ecosystems in the deep subsurface follow the flow of water driven by geological activity
inferredcites →https://doi.org/10.1046/j.1365-2435.2001.00525.xopenalex-snapshot
Genetic variation in thermal tolerance among natural populations of Drosophila buzzatii: down regulation of Hsp70 expression and variation in heat stress resistance traits
inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01771.xopenalex-snapshot
Effect of heat shock, pretreatment and hsp70 copy number on wing development in Drosophila melanogaster
inferredcites →https://doi.org/10.1046/j.1420-9101.1994.7010039.xopenalex-snapshot
Effects of exposure to short‐term heat stress on fitness components in Drosophila melanogaster
inferredcites →https://doi.org/10.1046/j.1461-0248.2003.00528.xopenalex-snapshot
The evolutionary and ecological role of heat shock proteins
inferredcites →https://doi.org/10.1051/medsci/20031967725openalex-snapshot
C. elegans : des neurones et des gènes
inferredcites →https://doi.org/10.1073/pnas.0805946105openalex-snapshot
Sequence and genetic map of Meloidogyne hapla : A compact nematode genome for plant parasitism
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An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers
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Telomeric repeats (TTAGGC)n are sufficient for chromosome capping function in Caenorhabditis elegans.
inferredcites →https://doi.org/10.1074/jbc.m112.356345openalex-snapshot
Mesencephalic Astrocyte-derived Neurotrophic Factor Protects the Heart from Ischemic Damage and Is Selectively Secreted upon Sarco/endoplasmic Reticulum Calcium Depletion
inferredcites →https://doi.org/10.1080/02648725.2017.1340546openalex-snapshot
Molecular analysis of Hsp70 mechanisms in plants and their function in response to stress
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Refuge From Predation, the Benefit of Living in an Extreme Acidic Environment?
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PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.755openalex-snapshot
Profile hidden Markov models.
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/btf870openalex-snapshot
SimiTri—visualizing similarity relationships for groups of sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btr088openalex-snapshot
ProtTest 3: fast selection of best-fit models of protein evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btt403openalex-snapshot
nhmmer: DNA homology search with profile HMMs
inferredcites →https://doi.org/10.1093/bioinformatics/btt582openalex-snapshot
orthAgogue: an agile tool for the rapid prediction of orthology relations
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PEAR: a fast and accurate Illumina Paired-End reAd mergeR
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/dnares/dsy032openalex-snapshot
The genome of the oyster Saccostrea offers insight into the environmental resilience of bivalves
inferredcites →https://doi.org/10.1093/femsec/fiy089openalex-snapshot
Fluctuations in populations of subsurface methane oxidizers in coordination with changes in electron acceptor availability
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The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum.
inferredcites →https://doi.org/10.1093/genetics/77.1.71openalex-snapshot
THE GENETICS OF CAENORHABDITIS ELEGANS
inferredcites →https://doi.org/10.1093/molbev/msi097openalex-snapshot
Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
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Divergence Times in Caenorhabditis and Drosophila Inferred from Direct Estimates of the Neutral Mutation Rate
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkn916openalex-snapshot
Assessing the gene space in draft genomes
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Dfam: a database of repetitive DNA based on profile hidden Markov models
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OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
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Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
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De novo assembly of human genomes with massively parallel short read sequencing
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.170720.113openalex-snapshot
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
inferredcites →https://doi.org/10.1101/gr.174302openalex-snapshot
The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes
inferredcites →https://doi.org/10.1101/gr.1917404openalex-snapshot
Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
inferredcites →https://doi.org/10.1101/gr.225276.117openalex-snapshot
taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time
inferredcites →https://doi.org/10.1105/tpc.8.2.241openalex-snapshot
Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes.
inferredcites →https://doi.org/10.1111/mec.12240openalex-snapshot
Thermal adaptation and acclimation of ectotherms from differing aquatic climates
inferredcites →https://doi.org/10.1126/science.1129631openalex-snapshot
Decay of Endoplasmic Reticulum-Localized mRNAs During the Unfolded Protein Response
inferredcites →https://doi.org/10.1126/science.1156093openalex-snapshot
Regulation of the Cellular Heat Shock Response in Caenorhabditis elegans by Thermosensory Neurons
inferredcites →https://doi.org/10.1126/science.282.5396.2022openalex-snapshot
Comparison of the Complete Protein Sets of Worm and Yeast: Orthology and Divergence
inferredcites →https://doi.org/10.1126/science.aao0827openalex-snapshot
Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins
inferredcites →https://doi.org/10.1128/aem.71.5.2433-2437.2005openalex-snapshot
Potential Role of Diploscapter sp. Strain LKC25, a Bacterivorous Nematode from Soil, as a Vector of Food-Borne Pathogenic Bacteria to Preharvest Fruits and Vegetables
inferredcites →https://doi.org/10.1128/jcm.00032-15openalex-snapshot
First Human Case of Fatal Halicephalobus gingivalis Meningoencephalitis in Australia
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What's wrong with Bonferroni adjustments
inferredcites →https://doi.org/10.1155/2015/510319openalex-snapshot
Roles of Hsp70s in Stress Responses of Microorganisms, Plants, and Animals
inferredcites →https://doi.org/10.1163/15685411-00003096openalex-snapshot
Estimation of phylogenetic divergence times in Panagrolaimidae and other nematodes using relaxed molecular clocks calibrated with insect and crustacean fossils
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
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hsp70 genes in the human genome: Conservation and differentiation patterns predict a wide array of overlapping and specialized functions
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The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans
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ARMET is a Soluble ER Protein Induced by the Unfolded Protein Response via ERSE-II Element
inferredcites →https://doi.org/10.1371/journal.pbio.0000045openalex-snapshot
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
inferredcites →https://doi.org/10.1371/journal.pbio.0040103openalex-snapshot
IAN Family Critically Regulates Survival and Development of T Lymphocytes
inferredcites →https://doi.org/10.1371/journal.pbio.1001050openalex-snapshot
Nematodes: The Worm and Its Relatives
inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot
Accelerated Profile HMM Searches
inferredcites →https://doi.org/10.1371/journal.pgen.1004078openalex-snapshot
Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus
inferredcites →https://doi.org/10.1371/journal.pntd.0000258openalex-snapshot
On the Extent and Origins of Genic Novelty in the Phylum Nematoda
inferredcites →https://doi.org/10.1379/1466-1268(1997)002<0060:dcohoi>2.3.co;2openalex-snapshot
Deleterious consequences of Hsp70 overexpression in Drosphilla melanogaster larvae
inferredcites →https://doi.org/10.1379/1466-1268(2002)007<0347:rohsph>2.0.co;2openalex-snapshot
Regulation of heat shock proteins, Hsp70 and Hsp64, in heat-shocked Malpighian tubules of Drosophila melanogaster larvae
inferredcites →https://doi.org/10.1534/genetics.104.040030openalex-snapshot
Analysis of Homologous Gene Clusters inCaenorhabditis elegansReveals Striking Regional Cluster Domains
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The Draft Genome and Transcriptome of Panagrellus redivivus Are Shaped by the Harsh Demands of a Free-Living Lifestyle
inferredcites →https://doi.org/10.1895/wormbook.1.15.1openalex-snapshot
Nematode genome evolution
inferredcites →https://doi.org/10.2174/138161213804143699openalex-snapshot
Hsp70 Protein Complexes as Drug Targets
inferredcites →https://doi.org/10.3389/fmicb.2014.00531openalex-snapshot
Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
inferredcites →https://doi.org/10.3389/fmicb.2014.00679openalex-snapshot
Comparisons of the composition and biogeographic distribution of the bacterial communities occupying South African thermal springs with those inhabiting deep subsurface fracture water
inferredcites →https://doi.org/10.4161/psb.4.3.7722openalex-snapshot
IAN/GIMAPs are conserved and novel regulators in vertebrates and angiosperm plants

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00239-019-09900-9openalex-snapshot
Stress Adapted Mollusca and Nematoda Exhibit Convergently Expanded Hsp70 and AIG1 Gene Families
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