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Phylogeny, transposable element and sex chromosome evolution of the basal lineage of birds
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf00283247openalex-snapshot
Chromosome studies in four species of Ratitae (Aves)
inferredcites →https://doi.org/10.1007/s00412-006-0088-yopenalex-snapshot
Comparison of the Z and W sex chromosomal architectures in elegant crested tinamou (Eudromia elegans) and ostrich (Struthio camelus) and the process of sex chromosome differentiation in palaeognathous birds
inferredcites →https://doi.org/10.1007/s10709-011-9581-1openalex-snapshot
Diverse stages of sex-chromosome differentiation in tinamid birds: evidence from crossover analysis in Eudromia elegans and Crypturellus tataupa
inferredcites →https://doi.org/10.1016/j.anbehav.2012.06.026openalex-snapshot
Mixed paternity despite high male parental care in great tinamous and other Palaeognathes
inferredcites →https://doi.org/10.1016/j.cub.2012.01.057openalex-snapshot
Chromosome-Wide Gene Silencing Initiates Y Degeneration in Drosophila
inferredcites →https://doi.org/10.1016/j.cub.2015.03.047openalex-snapshot
Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
inferredcites →https://doi.org/10.1016/j.cub.2016.10.029openalex-snapshot
Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites
inferredcites →https://doi.org/10.1016/j.tig.2018.04.001openalex-snapshot
Why Do Sex Chromosomes Stop Recombining?
inferredcites →https://doi.org/10.1016/j.tree.2007.05.003openalex-snapshot
Parallel divergence and degradation of the avian W sex chromosome
inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot
MITOS: Improved de novo metazoan mitochondrial genome annotation
inferredcites →https://doi.org/10.1016/s0003-3472(81)80031-0openalex-snapshot
The phylogeny of parental care in fishes
inferredcites →https://doi.org/10.1016/s0168-9525(00)02093-xopenalex-snapshot
Repbase Update: a database and an electronic journal of repetitive elements
inferredcites →https://doi.org/10.1038/324563a0openalex-snapshot
Ostrich ancestors found in the Northern Hemisphere suggest new hypothesis of ratite origins
inferredcites →https://doi.org/10.1038/nature03440openalex-snapshot
The DNA sequence of the human X chromosome
inferredcites →https://doi.org/10.1038/nature10231openalex-snapshot
Inference of human population history from individual whole-genome sequences
inferredcites →https://doi.org/10.1038/nature13151openalex-snapshot
Origins and functional evolution of Y chromosomes across mammals
inferredcites →https://doi.org/10.1038/nature13206openalex-snapshot
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
inferredcites →https://doi.org/10.1038/nature15697openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nature19417openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nature24277openalex-snapshot
Genetic effects on gene expression across human tissues
inferredcites →https://doi.org/10.1038/ncomms11396openalex-snapshot
Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes
inferredcites →https://doi.org/10.1038/ncomms1448openalex-snapshot
Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds
inferredcites →https://doi.org/10.1038/ng.3778openalex-snapshot
Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/s41467-017-01317-6openalex-snapshot
Large-scale suppression of recombination predates genomic rearrangements in Neurospora tetrasperma
inferredcites →https://doi.org/10.1038/s41559-019-0850-1openalex-snapshot
Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds
inferredcites →https://doi.org/10.1071/zo9950365openalex-snapshot
The Mating System of Free-Living Emus
inferredcites →https://doi.org/10.1073/pnas.0803242105openalex-snapshot
Phylogenomic evidence for multiple losses of flight in ratite birds
inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
inferredcites →https://doi.org/10.1073/pnas.1512599112openalex-snapshot
The evolution of parental cooperation in birds
inferredcites →https://doi.org/10.1073/pnas.1616702114openalex-snapshot
Dynamics of genome size evolution in birds and mammals
inferredcites →https://doi.org/10.1073/pnas.1701658114openalex-snapshot
Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism
inferredcites →https://doi.org/10.1073/pnas.1818486116openalex-snapshot
Exaggerated heterochiasmy in a fish with sex-linked male coloration polymorphisms
inferredcites →https://doi.org/10.1086/285595openalex-snapshot
On the Origin of Parental Care and the Early Evolution of Male and Female Parental Roles in Birds
inferredcites →https://doi.org/10.1093/beheco/8.2.126openalex-snapshot
The evolution of parental care in shorebirds: life histories, ecology, and sexual selection
inferredcites →https://doi.org/10.1093/bib/bbq072openalex-snapshot
PHAST and RPHAST: phylogenetic analysis with space/time models
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv184openalex-snapshot
ExaML version 3: a tool for phylogenomic analyses on supercomputers
inferredcites →https://doi.org/10.1093/gbe/evp006openalex-snapshot
Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes
inferredcites →https://doi.org/10.1093/gbe/evz154openalex-snapshot
Evolutionary Dynamics of Sex Chromosomes of Paleognathous Birds
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msz099openalex-snapshot
Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae)
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkh379openalex-snapshot
AUGUSTUS: a web server for gene finding in eukaryotes
inferredcites →https://doi.org/10.1093/nar/gkj118openalex-snapshot
TreeFam: a curated database of phylogenetic trees of animal gene families
inferredcites →https://doi.org/10.1093/sysbio/sys067openalex-snapshot
Ratite Nonmonophyly: Independent Evidence from 40 Novel Loci
inferredcites →https://doi.org/10.1093/sysbio/syx041openalex-snapshot
Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling
inferredcites →https://doi.org/10.1093/sysbio/syx064openalex-snapshot
Genomic Signature of an Avian Lilliput Effect across the K-Pg Extinction
inferredcites →https://doi.org/10.1093/sysbio/syz019openalex-snapshot
Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone
inferredcites →https://doi.org/10.1098/rspb.1995.0176openalex-snapshot
Evolutionary transitions in parental care in shorebirds
inferredcites →https://doi.org/10.1098/rspb.2005.3458openalex-snapshot
Prevalence of different modes of parental care in birds
inferredcites →https://doi.org/10.1098/rstb.2000.0717openalex-snapshot
The degeneration of Y chromosomes
inferredcites →https://doi.org/10.1098/rstb.2001.0932openalex-snapshot
Phylogenetic reconstruction of parental–care systems in the ancestors of birds
inferredcites →https://doi.org/10.1098/rstb.2011.0014openalex-snapshot
The genome as a life-history character: why rate of molecular evolution varies between mammal species
inferredcites →https://doi.org/10.1101/cshperspect.a017665openalex-snapshot
Sexual Conflict between Parents: Offspring Desertion and Asymmetrical Parental Care
inferredcites →https://doi.org/10.1101/gr.1933104openalex-snapshot
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot
BLAT —The BLAST -Like Alignment Tool
inferredcites →https://doi.org/10.1101/sqb.1987.052.01.094openalex-snapshot
Male-driven Molecular Evolution: A Model and Nucleotide Sequence Analysis
inferredcites →https://doi.org/10.1111/bij.12911openalex-snapshot
Genetic evidence for promiscuity in the Ornate TinamouNothoprocta ornata(Aves: Tinamiformes)
inferredcites →https://doi.org/10.1111/j.1095-8312.1985.tb00387.xopenalex-snapshot
The mating systems of ratites and tinamous: an evolutionary perspective
inferredcites →https://doi.org/10.1111/j.1469-7998.1973.tb03122.xopenalex-snapshot
Continental drift, paleoclimatology, and the evolution and biogeography of birds
inferredcites →https://doi.org/10.1111/j.1474-919x.1974.tb07648.xopenalex-snapshot
PHYLOGENY AND EVOLUTION OF THE RATITE BIRDS
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb00346.xopenalex-snapshot
SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM
inferredcites →https://doi.org/10.1111/j.1558-5646.1987.tb05864.xopenalex-snapshot
THE ACCUMULATION OF SEXUALLY ANTAGONISTIC GENES AS A SELECTIVE AGENT PROMOTING THE EVOLUTION OF REDUCED RECOMBINATION BETWEEN PRIMITIVE SEX CHROMOSOMES
inferredcites →https://doi.org/10.1126/science.1163245openalex-snapshot
Avian Paternal Care Had Dinosaur Origin
inferredcites →https://doi.org/10.1126/science.1225385openalex-snapshot
Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila
inferredcites →https://doi.org/10.1126/science.1246338openalex-snapshot
Complex evolutionary trajectories of sex chromosomes across bird taxa
inferredcites →https://doi.org/10.1126/science.1251981openalex-snapshot
Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution
inferredcites →https://doi.org/10.1126/science.1253451openalex-snapshot
Whole-genome analyses resolve early branches in the tree of life of modern birds
inferredcites →https://doi.org/10.1126/science.286.5441.964openalex-snapshot
Four Evolutionary Strata on the Human X Chromosome
inferredcites →https://doi.org/10.1126/science.aat7244openalex-snapshot
Convergent regulatory evolution and loss of flight in paleognathous birds
inferredcites →https://doi.org/10.1146/annurev-genet-120213-092359openalex-snapshot
Population Genomics of Transposable Elements in Drosophila
inferredcites →https://doi.org/10.1159/000163092openalex-snapshot
Synteny conservation of the Z chromosome in 14 avian species (11 families) supports a role for Z dosage in avian sex determination
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot
A scaling normalization method for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/s13059-016-1090-1openalex-snapshot
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
inferredcites →https://doi.org/10.1186/s13059-018-1550-xopenalex-snapshot
Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes
inferredcites →https://doi.org/10.1371/journal.pbio.1001711openalex-snapshot
The Epigenome of Evolving Drosophila Neo-Sex Chromosomes: Dosage Compensation and Heterochromatin Formation
inferredcites →https://doi.org/10.5860/choice.190602openalex-snapshot
Roman political thought: from Cicero to Augustine
inferredcites →https://doi.org/10.5860/choice.45-0862openalex-snapshot
The origins of genome architecture
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1101/gr.268516.120openalex-snapshot
Dosage-sensitive functions in embryonic development drove the survival of genes on sex-specific chromosomes in snakes, birds, and mammals
inferred← citeshttps://doi.org/10.1101/gr.271569.120openalex-snapshot
A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
inferred← citeshttps://doi.org/10.3390/genes11101126openalex-snapshot
The Female-Specific W Chromosomes of Birds Have Conserved Gene Contents but Are Not Feminized
inferred← citeshttps://doi.org/10.3390/genes11101153openalex-snapshot
Why Do Some Sex Chromosomes Degenerate More Slowly Than Others? The Odd Case of Ratite Sex Chromosomes
inferred← citeshttps://doi.org/10.3390/genes12040483openalex-snapshot
The Diversity and Evolution of Sex Chromosomes in Frogs
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