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Bayesian analysis of GWAS summary data reveals differential signatures of natural selection across human complex traits and functional genomic categories

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gepi.20297openalex-snapshot

Estimation of significance thresholds for genomewide association scans

inferredcites →https://doi.org/10.1007/bf01245622openalex-snapshot

Linkage disequilibrium in finite populations

inferredcites →https://doi.org/10.1016/j.ajhg.2011.02.002openalex-snapshot

Estimating Missing Heritability for Disease from Genome-wide Association Studies

inferredcites →https://doi.org/10.1016/j.ajhg.2015.10.006openalex-snapshot

Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates

inferredcites →https://doi.org/10.1016/j.cell.2018.05.046openalex-snapshot

Genomic Dissection of Bipolar Disorder and Schizophrenia, Including 28 Subphenotypes

inferredcites →https://doi.org/10.1016/j.cell.2018.09.049openalex-snapshot

Low-Frequency and Rare-Coding Variation Contributes to Multiple Sclerosis Risk

inferredcites →https://doi.org/10.1038/nature08494openalex-snapshot

Finding the missing heritability of complex diseases

inferredcites →https://doi.org/10.1038/nature09298openalex-snapshot

Integrating common and rare genetic variation in diverse human populations

inferredcites →https://doi.org/10.1038/nature13595openalex-snapshot

Biological insights from 108 schizophrenia-associated genetic loci

inferredcites →https://doi.org/10.1038/nature24284openalex-snapshot

Association analysis identifies 65 new breast cancer risk loci

inferredcites →https://doi.org/10.1038/ng.2213openalex-snapshot

Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits

inferredcites →https://doi.org/10.1038/ng.3097openalex-snapshot

Defining the role of common variation in the genomic and biological architecture of adult human height

inferredcites →https://doi.org/10.1038/ng.3359openalex-snapshot

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations

inferredcites →https://doi.org/10.1038/ng.3390openalex-snapshot

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

inferredcites →https://doi.org/10.1038/ng.3680openalex-snapshot

Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants

inferredcites →https://doi.org/10.1038/ng.3865openalex-snapshot

Reevaluation of SNP heritability in complex human traits

inferredcites →https://doi.org/10.1038/ng.3941openalex-snapshot

Concepts, estimation and interpretation of SNP-based heritability

inferredcites →https://doi.org/10.1038/ng.3954openalex-snapshot

Linkage disequilibrium–dependent architecture of human complex traits shows action of negative selection

inferredcites →https://doi.org/10.1038/ng.3985openalex-snapshot

Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology

inferredcites →https://doi.org/10.1038/ng.608openalex-snapshot

Common SNPs explain a large proportion of the heritability for human height

inferredcites →https://doi.org/10.1038/nrg.2017.101openalex-snapshot

Genetic architecture: the shape of the genetic contribution to human traits and disease

inferredcites →https://doi.org/10.1038/nrg700openalex-snapshot

Understanding quantitative genetic variation

inferredcites →https://doi.org/10.1038/s41467-018-06805-xopenalex-snapshot

Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes

inferredcites →https://doi.org/10.1038/s41467-019-08424-6openalex-snapshot

Quantification of frequency-dependent genetic architectures in 25 UK Biobank traits reveals action of negative selection

inferredcites →https://doi.org/10.1038/s41467-019-12653-0openalex-snapshot

Improved polygenic prediction by Bayesian multiple regression on summary statistics

inferredcites →https://doi.org/10.1038/s41562-018-0476-3openalex-snapshot

Imprint of assortative mating on the human genome

inferredcites →https://doi.org/10.1038/s41586-018-0579-zopenalex-snapshot

The UK Biobank resource with deep phenotyping and genomic data

inferredcites →https://doi.org/10.1038/s41588-018-0058-3openalex-snapshot

Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes

inferredcites →https://doi.org/10.1038/s41588-018-0101-4openalex-snapshot

Signatures of negative selection in the genetic architecture of human complex traits

inferredcites →https://doi.org/10.1038/s41588-018-0108-xopenalex-snapshot

Comparison of methods that use whole genome data to estimate the heritability and genetic architecture of complex traits

inferredcites →https://doi.org/10.1038/s41588-018-0142-8openalex-snapshot

Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci

inferredcites →https://doi.org/10.1038/s41588-018-0193-xopenalex-snapshot

Estimation of complex effect-size distributions using summary-level statistics from genome-wide association studies across 32 complex traits

inferredcites →https://doi.org/10.1038/s41588-018-0231-8openalex-snapshot

Functional architecture of low-frequency variants highlights strength of negative selection across coding and non-coding annotations

inferredcites →https://doi.org/10.1038/s41588-018-0279-5openalex-snapshot

SumHer better estimates the SNP heritability of complex traits from summary statistics

inferredcites →https://doi.org/10.1038/s41588-021-00997-7openalex-snapshot

Assessing the contribution of rare variants to complex trait heritability from whole-genome sequence data

inferredcites →https://doi.org/10.1073/pnas.0906182107openalex-snapshot

Genetic architecture of a complex trait and its implications for fitness and genome-wide association studies

inferredcites →https://doi.org/10.1073/pnas.1019276108openalex-snapshot

Demographic history and rare allele sharing among human populations

inferredcites →https://doi.org/10.1073/pnas.75.12.6168openalex-snapshot

Effect of overall phenotypic selection on genetic change at individual loci.

inferredcites →https://doi.org/10.1086/321272openalex-snapshot

Are Rare Variants Responsible for Susceptibility to Complex Diseases?

inferredcites →https://doi.org/10.1093/molbev/msy228openalex-snapshot

SLiM 3: Forward Genetic Simulations Beyond the Wright–Fisher Model

inferredcites →https://doi.org/10.1093/oso/9780198830870.001.0001openalex-snapshot

Evolution and Selection of Quantitative Traits

inferredcites →https://doi.org/10.1098/rstb.2005.1667openalex-snapshot

Theoretical models of selection and mutation on quantitative traits

inferredcites →https://doi.org/10.1101/375337openalex-snapshot

LDpred-funct: incorporating functional priors improves polygenic prediction accuracy in UK Biobank and 23andMe data sets

inferredcites →https://doi.org/10.1101/420497openalex-snapshot

Polygenicity of complex traits is explained by negative selection

inferredcites →https://doi.org/10.1101/gr.6081407openalex-snapshot

Identification of higher-order functional domains in the human ENCODE regions

inferredcites →https://doi.org/10.1161/circresaha.117.312086openalex-snapshot

Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease

inferredcites →https://doi.org/10.1186/s12864-016-2443-6openalex-snapshot

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits

inferredcites →https://doi.org/10.1214/17-aoas1046openalex-snapshot

Bayesian large-scale multiple regression with summary statistics from genome-wide association studies

inferredcites →https://doi.org/10.1214/ss/1177011136openalex-snapshot

Inference from Iterative Simulation Using Multiple Sequences

inferredcites →https://doi.org/10.1371/journal.pbio.2002985openalex-snapshot

A population genetic interpretation of GWAS findings for human quantitative traits

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.biopsych.2020.05.034openalex-snapshot

Risk in Relatives, Heritability, SNP-Based Heritability, and Genetic Correlations in Psychiatric Disorders: A Review

inferred← citeshttps://doi.org/10.1038/s41467-020-15421-7openalex-snapshot

Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration

inferred← citeshttps://doi.org/10.1038/s41467-020-17258-6openalex-snapshot

Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci

inferred← citeshttps://doi.org/10.1038/s41467-020-17719-yopenalex-snapshot

Theoretical and empirical quantification of the accuracy of polygenic scores in ancestry divergent populations

inferred← citeshttps://doi.org/10.1038/s41562-021-01231-4openalex-snapshot

A selection pressure landscape for 870 human polygenic traits

inferred← citeshttps://doi.org/10.1038/s41586-022-04434-5openalex-snapshot

Mapping genomic loci implicates genes and synaptic biology in schizophrenia

inferred← citeshttps://doi.org/10.3390/genes11030316openalex-snapshot

A Gene-Set Enrichment and Protein–Protein Interaction Network-Based GWAS with Regulatory SNPs Identifies Candidate Genes and Pathways Associated with Carcass Traits in Hanwoo Cattle

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