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NRL- and CRX-guided gene network modulates photoreceptor presynapse size and positioning during retinal development

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cne.21915openalex-snapshot

Early steps in the assembly of photoreceptor ribbon synapses in the mouse retina: The involvement of precursor spheres

inferredcites →https://doi.org/10.1002/cne.21974openalex-snapshot

Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled‐up primate brain

inferredcites →https://doi.org/10.1002/cne.901560107openalex-snapshot

Synaptogenesis in the photoreceptor terminal of the mouse retina

inferredcites →https://doi.org/10.1002/cne.901880204openalex-snapshot

Rods and cones in the mouse retina. I. Structural analysis using light and electron microscopy

inferredcites →https://doi.org/10.1007/978-1-4939-7522-8_8openalex-snapshot

In Vivo Electroporation of Developing Mouse Retina

inferredcites →https://doi.org/10.1016/0896-6273(95)90312-7openalex-snapshot

Mammalian rod terminal: Architecture of a binary synapse

inferredcites →https://doi.org/10.1016/j.cell.2017.09.043openalex-snapshot

Multiscale 3D Genome Rewiring during Mouse Neural Development

inferredcites →https://doi.org/10.1016/j.celrep.2015.01.005openalex-snapshot

Protein-4.1G-Mediated Membrane Trafficking Is Essential for Correct Rod Synaptic Location in the Retina and for Normal Visual Function

inferredcites →https://doi.org/10.1016/j.celrep.2016.10.074openalex-snapshot

NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors

inferredcites →https://doi.org/10.1016/j.neuron.2010.01.018openalex-snapshot

Design Principles of Insect and Vertebrate Visual Systems

inferredcites →https://doi.org/10.1016/j.neuron.2011.09.018openalex-snapshot

Transcriptional Regulation of Neuronal Polarity and Morphogenesis in the Mammalian Brain

inferredcites →https://doi.org/10.1016/j.neuron.2012.10.002openalex-snapshot

The Neuronal Organization of the Retina

inferredcites →https://doi.org/10.1016/j.neuron.2015.09.002openalex-snapshot

Mechanism for Selective Synaptic Wiring of Rod Photoreceptors into the Retinal Circuitry and Its Role in Vision

inferredcites →https://doi.org/10.1016/j.neuron.2017.02.021openalex-snapshot

The Auxiliary Calcium Channel Subunit α2δ4 Is Required for Axonal Elaboration, Synaptic Transmission, and Wiring of Rod Photoreceptors

inferredcites →https://doi.org/10.1016/j.neuron.2018.03.004openalex-snapshot

Role for Wnt Signaling in Retinal Neuropil Development: Analysis via RNA-Seq and In Vivo Somatic CRISPR Mutagenesis

inferredcites →https://doi.org/10.1016/j.preteyeres.2014.06.003openalex-snapshot

Functional architecture of the retina: Development and disease

inferredcites →https://doi.org/10.1016/j.tins.2004.11.009openalex-snapshot

Structure and function of ribbon synapses

inferredcites →https://doi.org/10.1016/s0531-5565(02)00151-1openalex-snapshot

Aging and the human neocortex

inferredcites →https://doi.org/10.1016/s0896-6273(00)00011-8openalex-snapshot

The Cone Pedicle, a Complex Synapse in the Retina

inferredcites →https://doi.org/10.1017/s0952523813000242openalex-snapshot

S cones: Evolution, retinal distribution, development, and spectral sensitivity

inferredcites →https://doi.org/10.1038/ncomms10590openalex-snapshot

Presynaptic partner selection during retinal circuit reassembly varies with timing of neuronal regeneration in vivo

inferredcites →https://doi.org/10.1038/ncomms14716openalex-snapshot

Nrl knockdown by AAV-delivered CRISPR/Cas9 prevents retinal degeneration in mice

inferredcites →https://doi.org/10.1038/ng774openalex-snapshot

Nrl is required for rod photoreceptor development

inferredcites →https://doi.org/10.1038/nmeth.2089openalex-snapshot

NIH Image to ImageJ: 25 years of image analysis

inferredcites →https://doi.org/10.1038/nn.2160openalex-snapshot

Pikachurin, a dystroglycan ligand, is essential for photoreceptor ribbon synapse formation

inferredcites →https://doi.org/10.1038/nrn2283openalex-snapshot

Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup

inferredcites →https://doi.org/10.1038/nrn2880openalex-snapshot

Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina

inferredcites →https://doi.org/10.1073/pnas.0408031102openalex-snapshot

Gene regulatory networks for development

inferredcites →https://doi.org/10.1073/pnas.0508214103openalex-snapshot

Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors

inferredcites →https://doi.org/10.1073/pnas.0605934104openalex-snapshot

Transformation of cone precursors to functional rod photoreceptors by bZIP transcription factor NRL

inferredcites →https://doi.org/10.1073/pnas.0708405105openalex-snapshot

How vision begins: An odyssey

inferredcites →https://doi.org/10.1073/pnas.0904863106openalex-snapshot

ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells

inferredcites →https://doi.org/10.1073/pnas.1015128107openalex-snapshot

Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture

inferredcites →https://doi.org/10.1073/pnas.2235688100openalex-snapshot

Electroporation and RNA interference in the rodent retina in vivo and in vitro

inferredcites →https://doi.org/10.1074/jbc.m003658200openalex-snapshot

The Leucine Zipper of NRL Interacts with the CRX Homeodomain

inferredcites →https://doi.org/10.1083/jcb.150.6.1385openalex-snapshot

Absence of α-Syntrophin Leads to Structurally Aberrant Neuromuscular Synapses Deficient in Utrophin

inferredcites →https://doi.org/10.1089/omi.2011.0118openalex-snapshot

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/hmg/ddy272openalex-snapshot

Cone-rod homeobox CRX controls presynaptic active zone formation in photoreceptors of mammalian retina

inferredcites →https://doi.org/10.1093/nar/gkw937openalex-snapshot

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

inferredcites →https://doi.org/10.1098/rspb.1966.0086openalex-snapshot

Organization of the primate retina: electron microscopy

inferredcites →https://doi.org/10.1098/rstb.1970.0036openalex-snapshot

Organization of the outer plexiform layer of the primate retina: Electron microscopy of Golgi-impregnated Cells

inferredcites →https://doi.org/10.1098/rstb.2009.0102openalex-snapshot

Evolution of vertebrate retinal photoreception

inferredcites →https://doi.org/10.1101/gr.109405.110openalex-snapshot

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors

inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

inferredcites →https://doi.org/10.1101/gr.142067.112openalex-snapshot

DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing

inferredcites →https://doi.org/10.1126/science.1193378openalex-snapshot

From the Connectome to the Synaptome: An Epic Love Story

inferredcites →https://doi.org/10.1126/science.aan6827openalex-snapshot

The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing

inferredcites →https://doi.org/10.1146/annurev-vision-082114-035709openalex-snapshot

Ribbon Synapses and Visual Processing in the Retina

inferredcites →https://doi.org/10.1167/iovs.04-1427openalex-snapshot

Cone-like Morphological, Molecular, and Electrophysiological Features of the Photoreceptors of the Nrl Knockout Mouse

inferredcites →https://doi.org/10.1167/iovs.07-0257openalex-snapshot

AAV-Mediated Expression Targeting of Rod and Cone Photoreceptors with a Human Rhodopsin Kinase Promoter

inferredcites →https://doi.org/10.1182/blood-2003-02-0495openalex-snapshot

Preclinical in vivo evaluation of pseudotyped adeno-associated virus vectors for liver gene therapy

inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot

Model-based Analysis of ChIP-Seq (MACS)

inferredcites →https://doi.org/10.1242/dev.127043openalex-snapshot

Photoreceptor cell fate specification in vertebrates

inferredcites →https://doi.org/10.1371/journal.pgen.1002649openalex-snapshot

Transcriptional Regulation of Rod Photoreceptor Homeostasis Revealed by In Vivo NRL Targetome Analysis

inferredcites →https://doi.org/10.1371/journal.pgen.1007375openalex-snapshot

Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution

inferredcites →https://doi.org/10.1371/journal.pone.0150024openalex-snapshot

Morphological Diversity of the Rod Spherule: A Study of Serially Reconstructed Electron Micrographs

inferredcites →https://doi.org/10.1523/jneurosci.2245-04.2004openalex-snapshot

Recruitment of the Rod Pathway by Cones in the Absence of Rods

inferredcites →https://doi.org/10.15252/embj.201592701openalex-snapshot

How to make a synaptic ribbon: RIBEYE deletion abolishes ribbons in retinal synapses and disrupts neurotransmitter release

inferredcites →https://doi.org/10.3389/fncel.2014.00259openalex-snapshot

In vivo knockdown of Piccolino disrupts presynaptic ribbon morphology in mouse photoreceptor synapses

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3390/ijms22147373openalex-snapshot

Features of Retinal Neurogenesis as a Key Factor of Age-Related Neurodegeneration: Myth or Reality?

inferred← citeshttps://doi.org/10.3390/life14091103openalex-snapshot

Murine Retina Outer Plexiform Layer Development and Transcriptome Analysis of Pre-Synapses in Photoreceptors

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