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Interspecies transcriptome analyses identify genes that control the development and evolution of limb skeletal proportion

https://doi.org/10.1101/754002
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Cooperation of Hoxa5 and Pax1 Genes during Formation of the Pectoral Girdle
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Shox2 is required for chondrocyte proliferation and maturation in proximal limb skeleton
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Mechanisms of TGF-β Signaling from Cell Membrane to the Nucleus
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Transition of Hox expression during limb cartilage development
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Control of Vertebrate Limb Outgrowth by the Proximal Factor Meis2 and Distal Antagonism of BMPs by Gremlin
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Tbx18 Targets Dermal Condensates for Labeling, Isolation, and Gene Ablation during Embryonic Hair Follicle Formation
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Pseudoautosomal deletions encompassing a novel homeobox gene cause growth failure in idiopathic short stature and Turner syndrome
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Mice lacking tissue non–specific alkaline phosphatase die from seizures due to defective metabolism of vitamin B–6
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Alternative expression analysis by RNA sequencing
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Quantification of mRNA using real-time RT-PCR
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
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Large-scale gene function analysis with the PANTHER classification system
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inferredcites →https://doi.org/10.1073/pnas.0510544103openalex-snapshot
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Three new allelic mouse mutations that cause skeletal overgrowth involve the natriuretic peptide receptor C gene ( Npr3 )
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STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
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PHOG, a candidate gene for involvement in the short stature of Turner syndrome
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TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
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inferredcites →https://doi.org/10.1093/nar/gkx554openalex-snapshot
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inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a108252openalex-snapshot
Two New Mutations in Linkage Group XVI of the House Mouse
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Retinoic Acid Receptor Gamma-Induced Misregulation of Chondrogenesis in the Murine Limb Bud In Vitro
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RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
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Periodontal Defects in the A116T Knock-in Murine Model of Odontohypophosphatasia
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MAB21L2, a vertebrate member of the Male-abnormal 21 family, modulates BMP signaling and interacts with SMAD1
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CRABP1 is associated with a poor prognosis in breast cancer: adding to the complexity of breast cancer cell response to retinoic acid
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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A survey of best practices for RNA-seq data analysis
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Erratum to: A survey of best practices for RNA-seq data analysis
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Hoxb-13: a new Hox gene in a distant region of the HOXB cluster maintains colinearity
inferredcites →https://doi.org/10.1242/dev.126.23.5515openalex-snapshot
The BMP antagonist Gremlin regulates outgrowth, chondrogenesis and programmed cell death in the developing limb
inferredcites →https://doi.org/10.1242/dev.127.3.621openalex-snapshot
The type I BMP receptor BMPRIB is required for chondrogenesis in the mouse limb
inferredcites →https://doi.org/10.1242/jcs.111997openalex-snapshot
Shox2regulates progression through chondrogenesis in the mouse proximal limb
inferredcites →https://doi.org/10.1251/bpo126openalex-snapshot
Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR
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Elevated Skeletal Osteopontin Levels Contribute to the Hypophosphatasia Phenotype in Akp2−/− Mice
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Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth in developing mice
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Differential aging of growth plate cartilage underlies differences in bone length and thus helps determine skeletal proportions
inferredcites →https://doi.org/10.1371/journal.pone.0106100openalex-snapshot
Differential Expression of Meis2, Mab21l2 and Tbx3 during Limb Development Associated with Diversification of Limb Morphology in Mammals
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Mice with an N-Ethyl-N-Nitrosourea (ENU) Induced Tyr209Asn Mutation in Natriuretic Peptide Receptor 3 (NPR3) Provide a Model for Kyphosis Associated with Activation of the MAPK Signaling Pathway
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Transcription Factor Short Stature Homeobox 2 Is Required for Proper Development of Tropomyosin-Related Kinase B-Expressing Mechanosensory Neurons
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Characterization of Two ENU-Induced Mutations Affecting Mouse Skeletal Morphology
inferredcites →https://doi.org/10.1534/genetics.114.167460openalex-snapshot
Genetic Interactions Between Shox2 and Hox Genes During the Regional Growth and Development of the Mouse Limb
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