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Genome-wide changes in genetic diversity in a population of Myotis lucifugus affected by white-nose syndrome

https://doi.org/10.1101/764647
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Genetic connectivity among swarming sites in the wide ranging and recently declining little brown bat ( M yotis lucifugus)
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Winter behavior of bats and the progression of white‐nose syndrome in the southeastern United States
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The other white‐nose syndrome transcriptome: Tolerant and susceptible hosts respond differently to the pathogen Pseudogymnoascus destructans
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Pathogen dynamics during invasion and establishment of white‐nose syndrome explain mechanisms of host persistence
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Major Histocompatibility Complex
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Torpor and basking in a small arid zone marsupial
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Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance
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Resistance is futile: RNA-sequencing reveals differing responses to bat fungal pathogen in Nearctic Myotis lucifugus and Palearctic Myotis myotis
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Genetic structure of winter populations of the endangered Indiana bat (Myotis sodalis) prior to the white nose syndrome epidemic: implications for the risk of disease spread
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Biology of Myotis thysanodes and M. lucifugus (Chiroptera: Vespertilionidae)—I. Thermoregulation
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Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes
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Facilitating the evolution of resistance to avian malaria in Hawaiian birds
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cis-Regulatory Changes in Kit Ligand Expression and Parallel Evolution of Pigmentation in Sticklebacks and Humans
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Phylogenetic evaluation of Geomyces and allies reveals no close relatives of Pseudogymnoascus destructans, comb. nov., in bat hibernacula of eastern North America
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Emerging infectious diseases of wildlife: a critical perspective
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Population genomics of rapid adaptation by soft selective sweeps
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Evolutionary rescue in a changing world
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Do infectious diseases drive MHC diversity?
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Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites
inferredcites →https://doi.org/10.1038/nature00828openalex-snapshot
Climate-mediated energetic constraints on the distribution of hibernating mammals
inferredcites →https://doi.org/10.1038/nature08798openalex-snapshot
Antagonistic coevolution accelerates molecular evolution
inferredcites →https://doi.org/10.1038/nature10590openalex-snapshot
Experimental infection of bats with Geomyces destructans causes white-nose syndrome
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The stem cell factor/Kit signalling pathway regulates mitochondrial function and energy expenditure
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Fast gapped-read alignment with Bowtie 2
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Genetics in geographically structured populations: defining, estimating and interpreting FST
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Natural selection and infectious disease in human populations
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Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
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Evolutionary insights into host–pathogen interactions from mammalian sequence data
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The disease triangle: pathogens, the environment and society
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SLIM: Simultaneous Logic-in-Memory Computing Exploiting Bilayer Analog OxRAM Devices
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White-nose syndrome without borders: Pseudogymnoascus destructans infection tolerated in Europe and Palearctic Asia but not in North America
inferredcites →https://doi.org/10.1073/pnas.0506889103openalex-snapshot
Emerging infectious disease and the loss of biodiversity in a Neotropical amphibian community
inferredcites →https://doi.org/10.1073/pnas.1200374109openalex-snapshot
Inoculation of bats with European Geomyces destructans supports the novel pathogen hypothesis for the origin of white-nose syndrome
inferredcites →https://doi.org/10.1073/pnas.182420799openalex-snapshot
Evidence for an ancient selective sweep in the MHC class I gene repertoire of chimpanzees
inferredcites →https://doi.org/10.1073/pnas.95.7.3714openalex-snapshot
Major histocompatibility complex variation associated with juvenile survival and parasite resistance in a large unmanaged ungulate population ( Ovis aries L. )
inferredcites →https://doi.org/10.1080/21505594.2017.1342910openalex-snapshot
Pseudogymnoascus destructans transcriptome changes during white-nose syndrome infections
inferredcites →https://doi.org/10.1086/392950openalex-snapshot
Dispersal, Gene Flow, and Population Structure
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr589openalex-snapshot
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
inferredcites →https://doi.org/10.1093/czoolo/59.3.427openalex-snapshot
Climate change and infectious diseases of wildlife: Altered interactions between pathogens, vectors and hosts
inferredcites →https://doi.org/10.1093/icb/icr076openalex-snapshot
Evaporative Water Loss Is a Plausible Explanation for Mortality of Bats from White-Nose Syndrome
inferredcites →https://doi.org/10.1093/jhered/89.3.238openalex-snapshot
Distortion of allele frequency distributions provides a test for recent population bottlenecks
inferredcites →https://doi.org/10.1093/jhered/esu012openalex-snapshot
Genetic Structure of Little Brown Bats (Myotis lucifugus) Corresponds with Spread of White-Nose Syndrome among Hibernacula
inferredcites →https://doi.org/10.1093/molbev/mst221openalex-snapshot
A Guide for the Design of Evolve and Resequencing Studies
inferredcites →https://doi.org/10.1093/molbev/msy136openalex-snapshot
Darwinian Positive Selection on the Pleiotropic Effects of KITLG Explain Skin Pigmentation and Winter Temperature Adaptation in Eurasians
inferredcites →https://doi.org/10.1093/nar/gky1049openalex-snapshot
UniProt: a worldwide hub of protein knowledge
inferredcites →https://doi.org/10.1093/sysbio/syy010openalex-snapshot
Evidence that Myotis lucifugus “Subspecies” are Five Nonsister Species, Despite Gene Flow
inferredcites →https://doi.org/10.1098/rsbl.2013.0177openalex-snapshot
Pathophysiology of white-nose syndrome in bats: a mechanistic model linking wing damage to mortality
inferredcites →https://doi.org/10.1098/rsos.140470openalex-snapshot
Sex and hibernaculum temperature predict survivorship in white-nose syndrome affected little brown myotis ( Myotis lucifugus )
inferredcites →https://doi.org/10.1098/rspb.2009.2084openalex-snapshot
How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings
inferredcites →https://doi.org/10.1098/rspb.2014.2335openalex-snapshot
Host and pathogen ecology drive the seasonal dynamics of a fungal disease, white-nose syndrome
inferredcites →https://doi.org/10.1098/rspb.2016.2232openalex-snapshot
Immune responses in hibernating little brown myotis ( Myotis lucifugus ) with white-nose syndrome
inferredcites →https://doi.org/10.1098/rstb.2008.0160openalex-snapshot
The role of ecological feedbacks in the evolution of host defence: what does theory tell us?
inferredcites →https://doi.org/10.1098/rstb.2008.0184openalex-snapshot
Decomposing health: tolerance and resistance to parasites in animals
inferredcites →https://doi.org/10.1098/rstb.2016.0044openalex-snapshot
Resistance in persisting bat populations after white-nose syndrome invasion
inferredcites →https://doi.org/10.1101/614842openalex-snapshot
White-nose syndrome restructures bat skin microbiomes
inferredcites →https://doi.org/10.1101/gad.1724308openalex-snapshot
The cohesin complex and its roles in chromosome biology
inferredcites →https://doi.org/10.1101/gr.078212.108openalex-snapshot
Mapping short DNA sequencing reads and calling variants using mapping quality scores
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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Landscape structure and ecology influence the spread of a bat fungal disease
inferredcites →https://doi.org/10.1111/1365-2656.12954openalex-snapshot
Higher fat stores contribute to persistence of little brown bat populations with white‐nose syndrome
inferredcites →https://doi.org/10.1111/1365-2664.12757openalex-snapshot
Efficacy of a probiotic bacterium to treat bats affected by the disease white‐nose syndrome
inferredcites →https://doi.org/10.1111/1755-0998.12432openalex-snapshot
The impact of library preparation protocols on the consistency of allele frequency estimates in P ool‐ S eq data
inferredcites →https://doi.org/10.1111/age.12504openalex-snapshot
Genome-wide association studies identify susceptibility loci affecting respiratory disease in Chinese Erhualian pigs under natural conditions
inferredcites →https://doi.org/10.1111/cobi.12485openalex-snapshot
A case study of bats and white‐nose syndrome demonstrating how to model population viability with evolutionary effects
inferredcites →https://doi.org/10.1111/cobi.12690openalex-snapshot
Effects of white‐nose syndrome on regional population patterns of 3 hibernating bat species
inferredcites →https://doi.org/10.1111/eva.12514openalex-snapshot
Profiling the immunome of little brown myotis provides a yardstick for measuring the genetic response to white‐nose syndrome
inferredcites →https://doi.org/10.1111/geb.12290openalex-snapshot
Disease alters macroecological patterns of N orth A merican bats
inferredcites →https://doi.org/10.1111/j.1365-2435.2006.01119.xopenalex-snapshot
Hibernation patterns in mammals: a role for bacterial growth?
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04263.xopenalex-snapshot
Population genetic patterns suggest a behavioural change in wild common frogs (Rana temporaria) following disease outbreaks (Ranavirus)
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05463.xopenalex-snapshot
Monitoring adaptive genetic responses to environmental change
inferredcites →https://doi.org/10.1111/j.1461-0248.2004.00693.xopenalex-snapshot
Mechanisms of disease‐induced extinction
inferredcites →https://doi.org/10.1111/j.1461-0248.2012.01791.xopenalex-snapshot
Divergent selection on locally adapted major histocompatibility complex immune genes experimentally proven in the field
inferredcites →https://doi.org/10.1111/j.1523-1739.2006.00524.xopenalex-snapshot
Evidence for the Role of Infectious Disease in Species Extinction and Endangerment
inferredcites →https://doi.org/10.1111/mec.12522openalex-snapshot
Population genomics from pool sequencing
inferredcites →https://doi.org/10.1111/mec.12726openalex-snapshot
Spatial patterns of neutral and functional genetic variations reveal patterns of local adaptation in raccoon ( P rocyon lotor) populations exposed to raccoon rabies
inferredcites →https://doi.org/10.1111/mec.13396openalex-snapshot
Population genetic structure of a common host predicts the spread of white‐nose syndrome, an emerging infectious disease in bats
inferredcites →https://doi.org/10.1111/mec.14827openalex-snapshot
Effect of torpor on host transcriptomic responses to a fungal pathogen in hibernating bats
inferredcites →https://doi.org/10.1111/mec.15813openalex-snapshot
Genomic signatures of selection in bats surviving white‐nose syndrome
inferredcites →https://doi.org/10.1126/sciadv.1500831openalex-snapshot
Environment, host, and fungal traits predict continental-scale white-nose syndrome in bats
inferredcites →https://doi.org/10.1126/science.1126121openalex-snapshot
A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern
inferredcites →https://doi.org/10.1126/science.1163874openalex-snapshot
Bat White-Nose Syndrome: An Emerging Fungal Pathogen?
inferredcites →https://doi.org/10.1126/science.1188594openalex-snapshot
An Emerging Disease Causes Regional Population Collapse of a Common North American Bat Species
inferredcites →https://doi.org/10.1126/science.1258268openalex-snapshot
Recent introduction of a chytrid fungus endangers Western Palearctic salamanders
inferredcites →https://doi.org/10.1126/science.287.5452.443openalex-snapshot
Emerging Infectious Diseases of Wildlife-- Threats to Biodiversity and Human Health
inferredcites →https://doi.org/10.1126/science.aau7285openalex-snapshot
Parallel adaptation of rabbit populations to myxoma virus
inferredcites →https://doi.org/10.1128/aem.02939-12openalex-snapshot
Distribution and Environmental Persistence of the Causative Agent of White-Nose Syndrome, Geomyces destructans, in Bat Hibernacula of the Eastern United States
inferredcites →https://doi.org/10.1134/s1990519x0801001xopenalex-snapshot
Functional role of proteins containing ankyrin repeats
inferredcites →https://doi.org/10.1139/cjz-2018-0229openalex-snapshot
Relatedness within and among northern long-eared bat (Myotis septentrionalis) colonies at a local scale
inferredcites →https://doi.org/10.1139/facets-2017-0022openalex-snapshot
Prelude to a panzootic: Gene flow and immunogenetic variation in northern little brown myotis vulnerable to bat white-nose syndrome
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110411-160248openalex-snapshot
Adaptive Genetic Variation on the Landscape: Methods and Cases
inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164258openalex-snapshot
African Genetic Diversity: Implications for Human Demographic History, Modern Human Origins, and Complex Disease Mapping
inferredcites →https://doi.org/10.1152/ajpregu.00058.2017openalex-snapshot
White-nose syndrome increases torpid metabolic rate and evaporative water loss in hibernating bats
inferredcites →https://doi.org/10.1186/1741-7007-8-135openalex-snapshot
Wing pathology of white-nose syndrome in bats suggests life-threatening disruption of physiology
inferredcites →https://doi.org/10.1186/s12899-014-0010-4openalex-snapshot
White-nose syndrome initiates a cascade of physiologic disturbances in the hibernating bat host
inferredcites →https://doi.org/10.1186/s12983-016-0143-3openalex-snapshot
White-nose syndrome survivors do not exhibit frequent arousals associated with Pseudogymnoascus destructans infection
inferredcites →https://doi.org/10.1186/s12983-019-0340-yopenalex-snapshot
The evolution of a bat population with white-nose syndrome (WNS) reveals a shift from an epizootic to an enzootic phase
inferredcites →https://doi.org/10.1186/s40168-017-0334-yopenalex-snapshot
Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome
inferredcites →https://doi.org/10.1186/s40850-017-0021-2openalex-snapshot
White-nose syndrome fungus, Pseudogymnoascus destructans, on bats captured emerging from caves during winter in the southeastern United States
inferredcites →https://doi.org/10.1186/s40850-018-0035-4openalex-snapshot
Natural selection in bats with historical exposure to white-nose syndrome
inferredcites →https://doi.org/10.1201/9780429466700-7openalex-snapshot
Population Genetic Structure
inferredcites →https://doi.org/10.1371/journal.pgen.1008461openalex-snapshot
The genetic architecture of helminth-specific immune responses in a wild population of Soay sheep (Ovis aries)
inferredcites →https://doi.org/10.1371/journal.pone.0019167openalex-snapshot
Pan-European Distribution of White-Nose Syndrome Fungus (Geomyces destructans) Not Associated with Mass Mortality
inferredcites →https://doi.org/10.1371/journal.pone.0038920openalex-snapshot
Frequent Arousal from Hibernation Linked to Severity of Infection and Mortality in Bats with White-Nose Syndrome
inferredcites →https://doi.org/10.1371/journal.pone.0046280openalex-snapshot
Temperature-Dependent Growth of Geomyces destructans, the Fungus That Causes Bat White-Nose Syndrome
inferredcites →https://doi.org/10.1371/journal.pone.0065907openalex-snapshot
Improved Analysis of Long-Term Monitoring Data Demonstrates Marked Regional Declines of Bat Populations in the Eastern United States
inferredcites →https://doi.org/10.1371/journal.pone.0074105openalex-snapshot
Skin Lesions in European Hibernating Bats Associated with Geomyces destructans, the Etiologic Agent of White-Nose Syndrome
inferredcites →https://doi.org/10.1371/journal.pone.0100176openalex-snapshot
Drift Rather than Selection Dominates MHC Class II Allelic Diversity Patterns at the Biogeographical Range Scale in Natterjack Toads Bufo calamita
inferredcites →https://doi.org/10.1371/journal.pone.0108714openalex-snapshot
Mycobiome of the Bat White Nose Syndrome Affected Caves and Mines Reveals Diversity of Fungi and Local Adaptation by the Fungal Pathogen Pseudogymnoascus (Geomyces) destructans
inferredcites →https://doi.org/10.1371/journal.pone.0112502openalex-snapshot
Host, Pathogen, and Environmental Characteristics Predict White-Nose Syndrome Mortality in Captive Little Brown Myotis (Myotis lucifugus)
inferredcites →https://doi.org/10.1371/journal.pone.0113958openalex-snapshot
The Resistance of a North American Bat Species (Eptesicus fuscus) to White-Nose Syndrome (WNS)
inferredcites →https://doi.org/10.1371/journal.pone.0126309openalex-snapshot
Population Genetic Structure Within and among Seasonal Site Types in the Little Brown Bat (Myotis lucifugus) and the Northern Long-Eared Bat (M. septentrionalis)
inferredcites →https://doi.org/10.1371/journal.pone.0128713openalex-snapshot
Range-Wide Genetic Analysis of Little Brown Bat (Myotis lucifugus) Populations: Estimating the Risk of Spread of White-Nose Syndrome
inferredcites →https://doi.org/10.1371/journal.pone.0140170openalex-snapshot
Lack of Spatial Immunogenetic Structure among Wolverine (Gulo gulo) Populations Suggestive of Broad Scale Balancing Selection
inferredcites →https://doi.org/10.1371/journal.pone.0141316openalex-snapshot
Novel Trichoderma polysporum Strain for the Biocontrol of Pseudogymnoascus destructans, the Fungal Etiologic Agent of Bat White Nose Syndrome
inferredcites →https://doi.org/10.1371/journal.pone.0179770openalex-snapshot
Microbial inhibitors of the fungus Pseudogymnoascus destructans, the causal agent of white-nose syndrome in bats
inferredcites →https://doi.org/10.1371/journal.ppat.1005168openalex-snapshot
The White-Nose Syndrome Transcriptome: Activation of Anti-fungal Host Responses in Wing Tissue of Hibernating Little Brown Myotis
inferredcites →https://doi.org/10.1534/genetics.110.114397openalex-snapshot
The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
inferredcites →https://doi.org/10.1534/genetics.115.181453openalex-snapshot
Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates
inferredcites →https://doi.org/10.1644/11-mamm-a-355.1openalex-snapshot
Population-level impact of white-nose syndrome on the endangered Indiana bat
inferredcites →https://doi.org/10.1644/12-mamm-a-065.1openalex-snapshot
Long-distance movements of little brown bats (Myotis lucifugus)
inferredcites →https://doi.org/10.1644/1545-1542(2002)083<0585:pamobi>2.0.co;2openalex-snapshot
PHILOPATRY AND MIGRATION OF BANDED INDIANA BATS (MYOTIS SODALIS) AND EFFECTS OF RADIO TRANSMITTERS
inferredcites →https://doi.org/10.1656/045.024.0105openalex-snapshot
Effect of Humidity on Development of Pseudogymnoascus destructans , the Causal Agent of Bat White-Nose Syndrome
inferredcites →https://doi.org/10.1890/11-0907.1openalex-snapshot
Emerging prion disease drives host selection in a wildlife population
inferredcites →https://doi.org/10.1890/14-2472.1openalex-snapshot
Conservation implications of ameliorating survival of little brown bats with white‐nose syndrome
inferredcites →https://doi.org/10.2307/1377850openalex-snapshot
Biology and Migration of the Bat, Myotis lucifugus, in New England
inferredcites →https://doi.org/10.2307/1381967openalex-snapshot
Winter Energy Budgets and Cost of Arousals for Hibernating Little Brown Bats, Myotis lucifugus
inferredcites →https://doi.org/10.2307/1942550openalex-snapshot
The Epizootiology and Ecological Significance of Malaria in Hawaiian Land Birds
inferredcites →https://doi.org/10.2307/2529965openalex-snapshot
Evolution and the Genetics of Populations, Volume 4: Variability within and among Natural Populations.
inferredcites →https://doi.org/10.3201/eid0506.990601openalex-snapshot
Emerging Infectious Diseases and Amphibian Population Declines
inferredcites →https://doi.org/10.3201/eid1608.100002openalex-snapshot
White-Nose Syndrome Fungus (Geomyces destructans) in Bats, Europe
inferredcites →https://doi.org/10.3201/eid1805.111711openalex-snapshot
Clonal Spread ofGeomyces destructansamong Bats, Midwestern and Southern United States
inferredcites →https://doi.org/10.3201/eid2309.170875openalex-snapshot
White-Nose Syndrome Fungus in a 1918 Bat Specimen from France
inferredcites →https://doi.org/10.3996/102017-jfwm-080openalex-snapshot
Observed Resiliency of Little Brown Myotis to Long-Term White-Nose Syndrome Exposure
inferredcites →https://doi.org/10.4161/viru.22330openalex-snapshot
Pathology in euthermic bats with white nose syndrome suggests a natural manifestation of immune reconstitution inflammatory syndrome
inferredcites →https://doi.org/10.5281/zenodo.13528031openalex-snapshot
A Five-year Assessment of Mortality and Geographic Spread of White-Nose Syndrome in North American Bats, with a look to the future. Update of White-Nose Syndrome in bats.
inferredcites →https://doi.org/10.7589/2012-04-121openalex-snapshot
Electrolyte Depletion in White-nose Syndrome Bats
inferredcites →https://doi.org/10.7589/2012-10-242openalex-snapshot
WHITE-NOSE SYNDROME-AFFECTED LITTLE BROWN MYOTIS (MYOTIS LUCIFUGUS) INCREASE GROOMING AND OTHER ACTIVE BEHAVIORS DURING AROUSALS FROM HIBERNATION
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