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Genomic interrogation of the burden and transmission of multidrug-resistant pathogens within and across hospital networks

https://doi.org/10.1101/764787
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Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s15010-009-9207-zopenalex-snapshot
Risks Factors for Infections with Extended-Spectrum Beta-Lactamase-Producing Escherichia coli and Klebsiella pneumoniae at a Tertiary Care University Hospital in Switzerland
inferredcites →https://doi.org/10.1007/s15010-018-1202-9openalex-snapshot
Vancomycin-resistant enterococci (VRE): a reason to isolate?
inferredcites →https://doi.org/10.1016/j.diagmicrobio.2017.05.014openalex-snapshot
Factors contributing to vancomycin-resistant Enterococcus spp. horizontal transmission events: exploration of the role of antibacterial consumption
inferredcites →https://doi.org/10.1016/j.ebiom.2017.04.032openalex-snapshot
Nationwide Surveillance of Clinical Carbapenem-resistant Enterobacteriaceae (CRE) Strains in China
inferredcites →https://doi.org/10.1016/j.ijid.2012.01.008openalex-snapshot
Bloodstream infection with extended-spectrum beta-lactamase-producing Enterobacteriaceae at a tertiary care hospital in New Zealand: risk factors and outcomes
inferredcites →https://doi.org/10.1016/j.jhin.2016.07.023openalex-snapshot
Temporal trends and risk factors for healthcare-associated vancomycin-resistant enterococci in adults
inferredcites →https://doi.org/10.1016/j.jinf.2008.09.034openalex-snapshot
Community-onset extended-spectrum β-lactamase (ESBL) producing Escherichia coli: Importance of international travel
inferredcites →https://doi.org/10.1016/s1473-3099(18)30605-4openalex-snapshot
Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis
inferredcites →https://doi.org/10.1017/ice.2018.279openalex-snapshot
Prevalence of antibiotic-resistant organisms in Canadian Hospitals. Comparison of point-prevalence survey results from 2010, 2012, and 2016
inferredcites →https://doi.org/10.1017/ice.2019.75openalex-snapshot
Integration of genomic and clinical data augments surveillance of healthcare-acquired infections
inferredcites →https://doi.org/10.1086/520437openalex-snapshot
Community‐Acquired Methicillin‐Resistant Staphylococcus aureus in Hospitalized Adults and Children without Known Risk Factors
inferredcites →https://doi.org/10.1086/669086openalex-snapshot
Burden of Bloodstream Infection Caused by Extended-Spectrum β-Lactamase–Producing Enterobacteriaceae Determined Using Multistate Modeling at a Swiss University Hospital and a Nationwide Predictive Model
inferredcites →https://doi.org/10.1086/675605openalex-snapshot
Establishment of a Statewide Network for Carbapenem-Resistant Enterobacteriaceae Prevention in a Low-Incidence Region
inferredcites →https://doi.org/10.1093/jac/dkf009openalex-snapshot
Risk factors associated with nosocomial methicillin-resistant Staphylococcus aureus (MRSA) infection including previous use of antimicrobials
inferredcites →https://doi.org/10.1093/jac/dkw560openalex-snapshot
Characterization of carbapenemase-producing Enterobacteriaceae in the West Midlands region of England: 2007–14
inferredcites →https://doi.org/10.1093/jac/dkx012openalex-snapshot
OXA-48-like carbapenemases in the UK: an analysis of isolates and cases from 2007 to 2014
inferredcites →https://doi.org/10.1093/jac/dky074openalex-snapshot
Relentless spread and adaptation of non-typeable vanA vancomycin-resistant Enterococcus faecium: a genome-wide investigation
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gku1196openalex-snapshot
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
inferredcites →https://doi.org/10.1093/ofid/ofz139openalex-snapshot
Vancomycin-Resistant Enterococcus Acquisition in a Tertiary Care Hospital: Testing the Roles of Antibiotic Use, Proton Pump Inhibitor Use, and Colonization Pressure
inferredcites →https://doi.org/10.1128/aac.01359-16openalex-snapshot
Results from the Canadian Nosocomial Infection Surveillance Program on Carbapenemase-Producing Enterobacteriaceae , 2010 to 2014
inferredcites →https://doi.org/10.1128/jcm.00573-19openalex-snapshot
Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016
inferredcites →https://doi.org/10.1128/jcm.00790-16openalex-snapshot
Real-Time Genome Sequencing of Resistant Bacteria Provides Precision Infection Control in an Institutional Setting
inferredcites →https://doi.org/10.1128/jcm.06025-11openalex-snapshot
Molecular Epidemiology over an 11-Year Period (2000 to 2010) of Extended-Spectrum β-Lactamase-Producing Escherichia coli Causing Bacteremia in a Centralized Canadian Region
inferredcites →https://doi.org/10.1371/journal.pmed.1001104openalex-snapshot
Mortality and Hospital Stay Associated with Resistant Staphylococcus aureus and Escherichia coli Bacteremia: Estimating the Burden of Antibiotic Resistance in Europe
inferredcites →https://doi.org/10.1371/journal.pone.0062678openalex-snapshot
Efficacy of Admission Screening for Extended-Spectrum Beta-Lactamase Producing Enterobacteriaceae
inferredcites →https://doi.org/10.1371/journal.pone.0160156openalex-snapshot
Detection of Healthcare-Related Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Transmission Events Using Combined Genetic and Phenotypic Epidemiology
inferredcites →https://doi.org/10.2807/1560-7917.es.2015.20.36.30014openalex-snapshot
Ongoing increasing temporal and geographical trends of the incidence of extended-spectrum beta-lactamase-producing Enterobacteriaceae infections in France, 2009 to 2013
inferredcites →https://doi.org/10.33321/cdi.2018.42.13openalex-snapshot
Australian Group on Antimicrobial Resistance (AGAR) Australian Enterococcal Sepsis Outcome Programme (AESOP) Annual Report 2015
inferredcites →https://doi.org/10.33321/cdi.2019.43.42openalex-snapshot
Australian Group on Antimicrobial Resistance (AGAR) Australian Enterococcal Sepsis Outcome Programme (AESOP) Annual Report 2017
inferredcites →https://doi.org/10.33321/cdi.2022.46.17openalex-snapshot
Australian Group on Antimicrobial Resistance (AGAR) Australian Enterococcal Sepsis Outcome Programme (AESOP) Annual Report 2020

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ebiom.2025.105661openalex-snapshot
Intratumoural pks Escherichia coli is associated with risk of metachronous colorectal cancer and adenoma development in people with Lynch syndrome
inferred← citeshttps://doi.org/10.1016/s2666-5247(21)00149-xopenalex-snapshot
Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis
inferred← citeshttps://doi.org/10.1038/s41416-023-02554-xopenalex-snapshot
Intratumoral presence of the genotoxic gut bacteria pks+ E. coli, Enterotoxigenic Bacteroides fragilis, and Fusobacterium nucleatum and their association with clinicopathological and molecular features of colorectal cancer
inferred← citeshttps://doi.org/10.1038/s42003-024-06012-zopenalex-snapshot
Emergence and clonal expansion of a qacA-harbouring sequence type 45 lineage of methicillin-resistant Staphylococcus aureus
inferred← citeshttps://doi.org/10.1128/mbio.02882-20openalex-snapshot
Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus
inferred← citeshttps://doi.org/10.1186/s12879-021-06386-zopenalex-snapshot
Genomic surveillance of antimicrobial resistant bacterial colonisation and infection in intensive care patients
inferred← citeshttps://doi.org/10.1186/s13073-022-01103-0openalex-snapshot
ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting
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