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Evolution of herbivory remodels a Drosophila genome

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Isotopic enrichment in herbivorous insects: a comparative field-based study of variation

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Differential Effects of Indole and Aliphatic Glucosinolates on Lepidopteran Herbivores

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Linkage disequilibrium and homozygosity of chromosome segments in finite populations

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Are feeding preferences and insecticide resistance associated with the size of detoxifying enzyme families in insect herbivores?

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Using Drosophila to study the evolution of herbivory and diet specialization

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“Plus-C” odorant-binding protein genes in two Drosophila species and the malaria mosquito Anopheles gambiae

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Metabolism of glucosinolate-derived isothiocyanates to glutathione conjugates in generalist lepidopteran herbivores

inferredcites →https://doi.org/10.1016/j.ibmb.2014.07.002openalex-snapshot

Rapid incorporation of glucosinolates as a strategy used by a herbivore to prevent activation by myrosinases

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A mode of action of glucosinolate-derived isothiocyanates: Detoxification depletes glutathione and cysteine levels with ramifications on protein metabolism in Spodoptera littoralis

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Pseudomonas syringae enhances herbivory by suppressing the reactive oxygen burst in Arabidopsis

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Insect herbivore counteradaptations to the plant glucosinolate–myrosinase system

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Diversification and dispersal of the Hawaiian Drosophilidae: The evolution of Scaptomyza

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Interaction of proteins with allyl isothiocyanate

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A Role for Isothiocyanates in Plant Resistance Against the Specialist Herbivore Pieris rapae

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Evolution of genes and genomes on the Drosophila phylogeny

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The genome of Tetranychus urticae reveals herbivorous pest adaptations

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The Drosophila melanogaster Genetic Reference Panel

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Select interneuron clusters determine female sexual receptivity in Drosophila

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Herbivory increases diversification across insect clades

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A heterozygous moth genome provides insights into herbivory and detoxification

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Genome editing retraces the evolution of toxin resistance in the monarch butterfly

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Strong selective sweep associated with a transposon insertion in Drosophila simulans

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Successful herbivore attack due to metabolic diversion of a plant chemical defense

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Community-wide convergent evolution in insect adaptation to toxic cardenolides by substitutions in the Na,K-ATPase

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Phyllotreta striolata flea beetles use host plant defense compounds to create their own glucosinolate-myrosinase system

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Evolution of herbivory in Drosophilidae linked to loss of behaviors, antennal responses, odorant receptors, and ancestral diet

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The butterfly plant arms-race escalated by gene and genome duplications

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The Sequence Alignment/Map format and SAMtools

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Trimmomatic: a flexible trimmer for Illumina sequence data

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HTSeq—a Python framework to work with high-throughput sequencing data

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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PAML 4: Phylogenetic Analysis by Maximum Likelihood

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Evolution in an Ancient Detoxification Pathway Is Coupled with a Transition to Herbivory in the Drosophilidae

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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

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An Insect Counteradaptation against Host Plant Defenses Evolved through Concerted Neofunctionalization

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025957openalex-snapshot

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

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Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

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Population differences in olfaction accompany host shift in Drosophila mojavensis

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Origins of P450 diversity

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04901.xopenalex-snapshot

Mining the plant–herbivore interface with a leafmining Drosophila of Arabidopsis

inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04578.xopenalex-snapshot

Role of camalexin, indole glucosinolates, and side chain modification of glucosinolate‐derived isothiocyanates in defense of Arabidopsis against Sclerotinia sclerotiorum

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Combining probability from independent tests: the weighted Z ‐method is superior to Fisher's approach

inferredcites →https://doi.org/10.1111/j.1558-5646.1964.tb01674.xopenalex-snapshot

BUTTERFLIES AND PLANTS: A STUDY IN COEVOLUTION

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COUMARINS AND CATERPILLARS: A CASE FOR COEVOLUTION

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Parallel Molecular Evolution in an Herbivore Community

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The Raison d'Être of Secondary Plant Substances

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BIOLOGY AND BIOCHEMISTRY OF GLUCOSINOLATES

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Secondary Compounds as Protective Agents

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MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

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SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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Drosophila Biology in the Genomic Age

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Ecology and Evolution of Secondary Compound Detoxification Systems in Caterpillars

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How interactions with plant chemicals shape insect genomes

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Signatures of selection and evolutionary relevance of cytochrome P450s in plant-insect interactions

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Diversity and evolution of the P450 family in arthropods

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Studying Natural Selection in the Era of Ubiquitous Genomes

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Molecular Evolution of Ecological Specialisation: Genomic Insights from the Diversification of Murine Rodents

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Molecular Identification of Leafmining Flies From Australia Including New Liriomyza Outbreaks

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Odorant Receptors Mediating Avoidance of Toxic Mustard Oils in Drosophila melanogaster Are Expanded in Herbivorous Relatives

inferred← citeshttps://doi.org/10.1093/molbev/msaf221openalex-snapshot

Large-scale Genome Analyses Provide Insights into Hymenoptera Evolution

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Evolution and genomic basis of the plant-penetrating ovipositor: a key morphological trait in herbivorous Drosophilidae

inferred← citeshttps://doi.org/10.1101/2019.12.27.889774openalex-snapshot

Evolution of olfactory receptors tuned to mustard oils in herbivorous Drosophilidae

inferred← citeshttps://doi.org/10.1101/2020.05.07.083253openalex-snapshot

Evolution and genetic basis of the plant-penetrating ovipositor, a key adaptation in herbivorous Drosophilidae

inferred← citeshttps://doi.org/10.1101/2022.12.07.519390openalex-snapshot

Insights into the evolution of herbivory from a leaf-mining, drosophilid fly

inferred← citeshttps://doi.org/10.1101/2023.03.16.532987openalex-snapshot

Evolution of chemosensory and detoxification gene families across herbivorous Drosophilidae

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Taste evolution in an herbivorous drosophilid

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Alternative Splicing in TRPA1 Drives Sensory Adaptation to Electrophiles in Drosophilids

inferred← citeshttps://doi.org/10.1111/mec.15703openalex-snapshot

Elevated rates of positive selection drive the evolution of pestiferousness in the Colorado potato beetle ( Leptinotarsa decemlineata , Say)

inferred← citeshttps://doi.org/10.1126/science.adg5725openalex-snapshot

Ecology-relevant bacteria drive the evolution of host antimicrobial peptides in Drosophila

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Seven Questions on the Chemical Ecology and Neurogenetics of Resource-Mediated Speciation

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Insect Phylogenetics: A Guided Tour of Insect Evolution

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