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Escherichia ruysiae sp. nov., isolated from an international traveller

https://doi.org/10.1101/781724
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/11557067openalex-snapshot
Algorithms in Bioinformatics
inferredcites →https://doi.org/10.1007/978-3-540-87361-7_10openalex-snapshot
Rapid Neighbour-Joining
inferredcites →https://doi.org/10.1007/bf01568943openalex-snapshot
Leclercia adecarboxylata Gen. Nov., Comb. Nov., formerly known asEscherichia adecarboxylata.
inferredcites →https://doi.org/10.1007/s10482-017-0844-4openalex-snapshot
A large-scale evaluation of algorithms to calculate average nucleotide identity
inferredcites →https://doi.org/10.1016/j.jsb.2006.02.009openalex-snapshot
MoxR AAA+ ATPases: A novel family of molecular chaperones?
inferredcites →https://doi.org/10.1016/j.meegid.2017.06.024openalex-snapshot
Phylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the family
inferredcites →https://doi.org/10.1016/s1286-4579(03)00049-2openalex-snapshot
Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem
inferredcites →https://doi.org/10.1016/s1473-3099(16)30319-xopenalex-snapshot
Import and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae by international travellers (COMBAT study): a prospective, multicentre cohort study
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/s41467-018-07641-9openalex-snapshot
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
inferredcites →https://doi.org/10.1038/s41598-019-40055-1openalex-snapshot
Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4
inferredcites →https://doi.org/10.1038/s41598-019-46831-3openalex-snapshot
Genomic and molecular characterisation of Escherichia marmotae from wild rodents in Qinghai-Tibet plateau as a potential pathogen
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv421openalex-snapshot
Roary: rapid large-scale prokaryote pan genome analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot
fastp: an ultra-fast all-in-one FASTQ preprocessor
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gki008openalex-snapshot
VFDB: a reference database for bacterial virulence factors
inferredcites →https://doi.org/10.1093/nar/gkz239openalex-snapshot
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
inferredcites →https://doi.org/10.1099/ijs.0.000228openalex-snapshot
Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana
inferredcites →https://doi.org/10.1099/ijs.0.013458-0openalex-snapshot
Gram-negative bacteria associated with brewery yeasts: reclassification of Obesumbacterium proteus biogroup 2 as Shimwellia pseudoproteus gen. nov., sp. nov., and transfer of Escherichia blattae to Shimwellia blattae comb. nov.
inferredcites →https://doi.org/10.1099/ijs.0.02475-0openalex-snapshot
Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children
inferredcites →https://doi.org/10.1099/ijsem.0.002516openalex-snapshot
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
inferredcites →https://doi.org/10.1101/gr.251678.119openalex-snapshot
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
inferredcites →https://doi.org/10.1111/1348-0421.12374openalex-snapshot
Phylogenetics of family Enterobacteriaceae and proposal to reclassify Escherichia hermannii and Salmonella subterranea as Atlantibacter hermannii and Atlantibacter subterranea gen. nov., comb. nov.
inferredcites →https://doi.org/10.1128/aac.00419-13openalex-snapshot
The Comprehensive Antibiotic Resistance Database
inferredcites →https://doi.org/10.1128/ecosalplus.esp-0002-2015openalex-snapshot
The "Cryptic" Escherichia
inferredcites →https://doi.org/10.1128/genomea.00271-18openalex-snapshot
Draft Genome Sequences of Escherichia albertii, Escherichia fergusonii, and Strains Belonging to Six Cryptic Lineages of Escherichia spp
inferredcites →https://doi.org/10.1128/jcm.01210-07openalex-snapshot
Multidrug-Resistant Escherichia fergusonii : a Case of Acute Cystitis
inferredcites →https://doi.org/10.1128/jcm.21.1.77-81.1985openalex-snapshot
Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens
inferredcites →https://doi.org/10.1128/jcm.41.10.4852-4854.2003openalex-snapshot
Biochemical Properties of a Newly Described Escherichia Species, Escherichia albertii
inferredcites →https://doi.org/10.1186/1471-2105-14-60openalex-snapshot
Genome sequence-based species delimitation with confidence intervals and improved distance functions
inferredcites →https://doi.org/10.1371/journal.pcbi.1005595openalex-snapshot
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.3201/eid1803.111401openalex-snapshot
Clinical Significance ofEscherichia albertii
inferredcites →https://doi.org/10.5962/bhl.title.84653openalex-snapshot
Manual of tropical medicine
inferredcites →https://doi.org/10.7287/peerj.preprints.1900v1openalex-snapshot
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
inferredcites →https://doi.org/10.7326/0003-4819-66-4-818openalex-snapshot
A Manual of Tropical Medicine.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00284-025-04268-0openalex-snapshot
Genomic Features of E. ruysiae Associated with the Ecological Origin: Implications for the Environmental Hypothesis
inferred← citeshttps://doi.org/10.1016/j.watres.2020.116204openalex-snapshot
Fecal indicator bacteria from environmental sources; strategies for identification to improve water quality monitoring
inferred← citeshttps://doi.org/10.1101/613554openalex-snapshot
The user’s guide to comparative genomics with EnteroBase, including case studies on transmissions of micro-clades of Salmonella , the phylogeny of ancient and modern Yersinia pestis genomes, and the core genomic diversity of all Escherichia
inferred← citeshttps://doi.org/10.1101/864983openalex-snapshot
Non-clonal emergence of colistin resistance associated with mutations in the BasRS two-component system in Escherichia coli bloodstream isolates
inferred← citeshttps://doi.org/10.1101/gr.251678.119openalex-snapshot
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
inferred← citeshttps://doi.org/10.1128/msphere.00143-20openalex-snapshot
Nonclonal Emergence of Colistin Resistance Associated with Mutations in the BasRS Two-Component System in Escherichia coli Bloodstream Isolates
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