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Bayesian Linear Mixed Models for Motif Activity Analysis
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Outgoing claims: the papers this work cites, builds on, or argues with.
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The Genotype-Tissue Expression (GTEx) project
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Multiple-laboratory comparison of microarray platforms
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Histone H3K27ac separates active from poised enhancers and predicts developmental state
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Massively parallel measurements of molecular interaction kinetics on a microfluidic platform
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Estimating Transformations for Regression Via Additivity and Variance Stabilization
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BEDTools: a flexible suite of utilities for comparing genomic features
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GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments
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RUNXsuper-enhancer control through the Notch pathway by Epstein-Barr virus transcription factors regulates B cell growth
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Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data
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Improving the value of public RNA-seq expression data by phenotype prediction
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GENCODE reference annotation for the human and mouse genomes
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VII. Note on regression and inheritance in the case of two parents
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LIMIX: genetic analysis of multiple traits
inferredcites →https://doi.org/10.1101/474403openalex-snapshot
GimmeMotifs: an analysis framework for transcription factor motif analysis
inferredcites →https://doi.org/10.1101/gr.169508.113openalex-snapshot
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
inferredcites →https://doi.org/10.1101/gr.173039.114openalex-snapshot
Linking signaling pathways to transcriptional programs in breast cancer
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Integrated analysis of motif activity and gene expression changes of transcription factors
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Matplotlib: A 2D Graphics Environment
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2D Principal Component Analysis for Face and Facial-Expression Recognition
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Python for Scientists and Engineers
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Forkhead box class O transcription factors in liver function and disease
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Stochastic Gene Expression in a Single Cell
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Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.aaf4382openalex-snapshot
Liquid phase condensation in cell physiology and disease
inferredcites →https://doi.org/10.1126/science.aan2507openalex-snapshot
A pathology atlas of the human cancer transcriptome
inferredcites →https://doi.org/10.1128/jvi.76.10.4919-4927.2002openalex-snapshot
Expression of Transcription Factor AML-2 (RUNX3, CBFα-3) Is Induced by Epstein-Barr Virus EBNA-2 and Correlates with the B-Cell Activation Phenotype
inferredcites →https://doi.org/10.1145/1015330.1015435openalex-snapshot
Feature selection, L 1 vs. L 2 regularization, and rotational invariance
inferredcites →https://doi.org/10.1182/blood-2016-10-687830openalex-snapshot
Role of RUNX1 in hematological malignancies
inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot
Differential expression analysis for sequence count data
inferredcites →https://doi.org/10.12688/f1000research.12223.1openalex-snapshot
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
inferredcites →https://doi.org/10.1371/journal.pcbi.1002330openalex-snapshot
Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies
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Individual Rules for Trail Pattern Formation in Argentine Ants (Linepithema humile)
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Parameter estimation for the calibration and variance stabilization of microarray data
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Data Structures for Statistical Computing in Python
inferredcites →https://doi.org/10.3324/haematol.2013.094243openalex-snapshot
BLUEPRINT: mapping human blood cell epigenomes
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