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Sugars dominate the seagrass rhizosphere

https://doi.org/10.1101/797522
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Detritus-Bacteria-Meiofauna interactions in a seagrass bed (Posidonia oceanica) of the NW Mediterranean
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Quantitative and Qualitative Aspects of Dissolved Organic Carbon Leached from Senescent Plants in an Oligotrophic Wetland
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Exudation of organic carbon by the seagrass Halodule wrightii Aschers. And its effect on bacterial growth in the sediment
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Phenolic acids in seagrasses
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Sugars, cytolitols and seagrass phylogeny
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Seasonal aspects of photosynthesis in Posidonia oceanica: Influence of depth, temperature and light intensity
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Dissolved Organic Matter in Aquatic Systems
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The relationship between seagrass (Posidonia oceanica) decline and sulfide porewater concentration in carbonate sediments
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Biogeochemistry of dissolved organic matter in an anoxic intertidal creek bank
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Responses of Pseudomonas putida to toxic aromatic carbon sources
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Prevalent root-derived phenolics drive shifts in microbial community composition and prime decomposition in forest soil
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Dissolved and particulate carbohydrates in contrasting marine sediments
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Distribution of phenolic compounds in the seagrass Posidonia oceanica
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The role of polyphenols in terrestrial ecosystem nutrient cycling
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The importance of mineralization based on sulfate reduction for nutrient regeneration in tropical seagrass sediments
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Glucose fluxes and concentrations of dissolved combined neutral sugars (polysaccharides) in the Ross Sea and Polar Front Zone, Antarctica
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CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets
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A Method Detection Limit for the Analysis of Natural Organic Matter via Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
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In Situ Applications of a New Diver-Operated Motorized Microsensor Profiler
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Sulfur cycling and seagrass (Posidonia oceanica) status in carbonate sediments
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Metabolic activity of Streptococcus mutans biofilms and gene expression during exposure to xylitol and sucrose
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Persistence of soil organic matter as an ecosystem property
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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Near-optimal probabilistic RNA-seq quantification
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
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Plant diversity increases soil microbial activity and soil carbon storage
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Seagrass ecosystems as a globally significant carbon stock
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Binning metagenomic contigs by coverage and composition
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
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DADA2: High-resolution sample inference from Illumina amplicon data
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Gas chromatography mass spectrometry–based metabolite profiling in plants
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inferredcites →https://doi.org/10.1038/s41396-018-0308-5openalex-snapshot
Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress
inferredcites →https://doi.org/10.1038/s41564-018-0129-3openalex-snapshot
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
inferredcites →https://doi.org/10.1038/s41564-018-0171-1openalex-snapshot
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
inferredcites →https://doi.org/10.1038/srep42890openalex-snapshot
Depth-specific fluctuations of gene expression and protein abundance modulate the photophysiology in the seagrass Posidonia oceanica
inferredcites →https://doi.org/10.1073/pnas.0507535103openalex-snapshot
The diversity and biogeography of soil bacterial communities
inferredcites →https://doi.org/10.1073/pnas.0905620106openalex-snapshot
Accelerating loss of seagrasses across the globe threatens coastal ecosystems
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Diversity and heritability of the maize rhizosphere microbiome under field conditions
inferredcites →https://doi.org/10.1073/pnas.1820691116openalex-snapshot
Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/bts611openalex-snapshot
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
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InterProScan 5: genome-scale protein function classification
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/bioinformatics/btv638openalex-snapshot
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
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GToTree: a user-friendly workflow for phylogenomics
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UniProt Knowledgebase: a hub of integrated protein data
inferredcites →https://doi.org/10.1093/femsec/fix033openalex-snapshot
Sediment anoxia limits microbial-driven seagrass carbon remineralization under warming conditions
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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Pfam: the protein families database
inferredcites →https://doi.org/10.1093/nar/gky1085openalex-snapshot
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
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dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
inferredcites →https://doi.org/10.1093/nar/gkz239openalex-snapshot
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
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Bridging the Gap Between Single-Strain and Community-Level Plant-Microbe Chemical Interactions
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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metaSPAdes: a new versatile metagenomic assembler
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Microbiology of sugar‐rich environments: diversity, ecology and system constraints
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Seasonal Changes in Soluble Carbohydrates, Starch, and Energy Content in Mediterranean Seagrasses
inferredcites →https://doi.org/10.1111/nph.15041openalex-snapshot
Phenolic root exudate and tissue compounds vary widely among temperate forest tree species and have contrasting effects on soil microbial respiration
inferredcites →https://doi.org/10.1111/ppl.12751openalex-snapshot
Sugars en route to the roots. Transport, metabolism and storage within plant roots and towards microorganisms of the rhizosphere
inferredcites →https://doi.org/10.1126/science.1107851openalex-snapshot
Comparative Metagenomics of Microbial Communities
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Effect of phenolic monomers on the growth and beta-glucosidase activity of Bacteroides ruminicola and on the carboxymethylcellulase, beta-glucosidase, and xylanase activities of Bacteroides succinogenes
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DNA recovery from soils of diverse composition
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Phylogenetic Analysis of Culturable Dimethyl Sulfide-Producing Bacteria from a Spartina -Dominated Salt Marsh and Estuarine Water
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Marine Metabolomics: a Method for Nontargeted Measurement of Metabolites in Seawater by Gas Chromatography–Mass Spectrometry
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phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes
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The Plant Microbiome: From Ecology to Reductionism and Beyond
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THE ROLE OF ROOT EXUDATES IN RHIZOSPHERE INTERACTIONS WITH PLANTS AND OTHER ORGANISMS
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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MUSCLE: a multiple sequence alignment method with reduced time and space complexity
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Accelerated Profile HMM Searches
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Phenolic fingerprint of the seagrassPosidonia oceanicafrom four locations in the Mediterranean Sea: first evidence for the large predominance of chicoric acid
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Value of Wetlands in Protecting Southeast Louisiana from Hurricane Storm Surges, The
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High Net Primary Production of Mediterranean Seagrass (Posidonia oceanica) Meadows Determined With Aquatic Eddy Covariance
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Meer und Strand
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AN ENLARGED CLARKE–BUMPUS PLANKTON SAMPLER1
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Sulfide production in anaerobic microcosms
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Microbiome succession during ammonification in eelgrass bed sediments

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-031-21622-0_4openalex-snapshot
Meiofauna Meets Microbes—Chemosynthetic Symbioses
inferred← citeshttps://doi.org/10.1007/s00248-021-01867-9openalex-snapshot
Instability and Stasis Among the Microbiome of Seagrass Leaves, Roots and Rhizomes, and Nearby Sediments Within a Natural pH Gradient
inferred← citeshttps://doi.org/10.1021/acs.est.5c15439openalex-snapshot
Fate of Organic Carbon Shaped by Iron Minerals in Coastal Wetlands: Mechanisms and Implications
inferred← citeshttps://doi.org/10.3389/fmars.2021.771382openalex-snapshot
Resolving Chemical Gradients Around Seagrass Roots—A Review of Available Methods
inferred← citeshttps://doi.org/10.3390/life11080852openalex-snapshot
Spatial and Species Variations of Bacterial Community Structure and Putative Function in Seagrass Rhizosphere Sediment
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